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PMC:3218875 / 24005-24332 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T12561 203-207 Regulation denotes role
T12560 138-142 Transcription denotes mRNA
T12559 116-120 Positive_regulation denotes high
T12558 75-82 Positive_regulation denotes induced
T12540 234-237 Protein denotes A20
T12539 212-218 Protein denotes ABIN-1
T12538 131-137 Protein denotes ABIN-1
T12537 71-74 Protein denotes TNF
T12536 43-49 Protein denotes ABIN-1
R8312 T12537 T12558 causeOf TNF,induced

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13458 326-327 . denotes .
T13457 325-326 NNP denotes ]
T13456 323-325 CD denotes 59
T13455 322-323 NNP denotes [
T13454 319-321 NNP denotes RA
T13453 316-318 IN denotes of
T13452 303-315 NN denotes pathogenesis
T13451 299-302 DT denotes the
T13450 295-298 CC denotes and
T13449 284-294 NN denotes signalling
T13448 278-283 JJ denotes NF-κB
T13447 275-277 IN denotes of
T13446 264-274 NN denotes regulation
T13445 255-263 NN denotes feedback
T13444 246-254 JJ denotes negative
T13443 242-245 DT denotes the
T13442 239-241 IN denotes in
T13441 237-238 , denotes ,
T13440 234-237 NNP denotes A20
T13439 229-233 IN denotes with
T13438 220-228 RB denotes together
T13437 218-219 , denotes ,
T13436 212-218 NNP denotes ABIN-1
T13435 208-211 IN denotes for
T13434 203-207 NN denotes role
T13433 193-202 JJ denotes potential
T13432 191-192 DT denotes a
T13431 180-190 VBG denotes indicating
T13430 178-179 , denotes ,
T13429 170-178 NNS denotes biopsies
T13428 163-169 NN denotes tissue
T13427 160-162 NNP denotes RA
T13426 157-159 IN denotes in
T13425 148-156 VBN denotes detected
T13424 143-147 VBD denotes were
T13423 138-142 NNP denotes mRNA
T13422 131-137 NNP denotes ABIN-1
T13421 128-130 IN denotes of
T13420 121-127 NNS denotes levels
T13419 116-120 JJ denotes high
T13418 112-115 CC denotes and
T13417 110-111 , denotes ,
T13416 98-110 NNS denotes synoviocytes
T13415 92-97 JJ denotes human
T13414 89-91 IN denotes in
T13413 83-88 NNS denotes genes
T13412 71-82 JJ denotes TNF-induced
T13411 65-70 IN denotes among
T13410 54-64 VBN denotes identified
T13409 50-53 VBD denotes was
T13408 43-49 NN denotes ABIN-1
T13407 41-42 , denotes ,
T13406 33-41 NN denotes analysis
T13405 22-32 NN denotes microarray
T13404 6-21 NN denotes oligonucleotide
T13403 0-5 VBG denotes Using
R8954 T13403 T13410 advcl Using,identified
R8955 T13404 T13406 nmod oligonucleotide,analysis
R8956 T13405 T13406 compound microarray,analysis
R8957 T13406 T13403 dobj analysis,Using
R8958 T13407 T13410 punct ",",identified
R8959 T13408 T13410 nsubjpass ABIN-1,identified
R8960 T13409 T13410 auxpass was,identified
R8961 T13410 T13410 ROOT identified,identified
R8962 T13411 T13410 prep among,identified
R8963 T13412 T13413 amod TNF-induced,genes
R8964 T13413 T13411 pobj genes,among
R8965 T13414 T13410 prep in,identified
R8966 T13415 T13416 amod human,synoviocytes
R8967 T13416 T13414 pobj synoviocytes,in
R8968 T13417 T13410 punct ",",identified
R8969 T13418 T13410 cc and,identified
R8970 T13419 T13420 amod high,levels
R8971 T13420 T13425 nsubjpass levels,detected
R8972 T13421 T13420 prep of,levels
R8973 T13422 T13423 compound ABIN-1,mRNA
R8974 T13423 T13421 pobj mRNA,of
R8975 T13424 T13425 auxpass were,detected
R8976 T13425 T13410 conj detected,identified
R8977 T13426 T13425 prep in,detected
R8978 T13427 T13429 compound RA,biopsies
R8979 T13428 T13429 compound tissue,biopsies
R8980 T13429 T13426 pobj biopsies,in
R8981 T13430 T13425 punct ",",detected
R8982 T13431 T13425 advcl indicating,detected
R8983 T13432 T13434 det a,role
R8984 T13433 T13434 amod potential,role
R8985 T13434 T13431 dobj role,indicating
R8986 T13435 T13434 prep for,role
R8987 T13436 T13435 pobj ABIN-1,for
R8988 T13437 T13431 punct ",",indicating
R8989 T13438 T13439 advmod together,with
R8990 T13439 T13425 prep with,detected
R8991 T13440 T13439 pobj A20,with
R8992 T13441 T13425 punct ",",detected
R8993 T13442 T13425 prep in,detected
R8994 T13443 T13446 det the,regulation
R8995 T13444 T13446 amod negative,regulation
R8996 T13445 T13446 compound feedback,regulation
R8997 T13446 T13442 pobj regulation,in
R8998 T13447 T13446 prep of,regulation
R8999 T13448 T13449 compound NF-κB,signalling
R9000 T13449 T13447 pobj signalling,of
R9001 T13450 T13449 cc and,signalling
R9002 T13451 T13452 det the,pathogenesis
R9003 T13452 T13449 conj pathogenesis,signalling
R9004 T13453 T13452 prep of,pathogenesis
R9005 T13454 T13455 compound RA,[
R9006 T13455 T13453 pobj [,of
R9007 T13456 T13457 nummod 59,]
R9008 T13457 T13452 appos ],pathogenesis
R9009 T13458 T13425 punct .,detected

DLUT931

Id Subject Object Predicate Lexical cue
T13702 234-237 Protein denotes A20
T13701 212-218 Protein denotes ABIN-1
T13700 131-137 Protein denotes ABIN-1
T13699 71-74 Protein denotes TNF
T13698 43-49 Protein denotes ABIN-1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13627 71-74 http://www.uniprot.org/uniprot/P01375 denotes TNF
T13620 212-218 http://www.uniprot.org/uniprot/Q15025 denotes ABIN-1
T13619 131-137 http://www.uniprot.org/uniprot/Q15025 denotes ABIN-1
T13618 43-49 http://www.uniprot.org/uniprot/Q15025 denotes ABIN-1
T13611 234-237 http://www.uniprot.org/uniprot/P21580 denotes A20

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T12733 234-237 Protein denotes A20
T12732 212-218 Protein denotes ABIN-1
T12731 131-137 Protein denotes ABIN-1
T12730 71-74 Protein denotes TNF
T12729 43-49 Protein denotes ABIN-1

2_test

Id Subject Object Predicate Lexical cue
21639951-12965196-4289487 323-325 12965196 denotes 59

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12974 325-326 -RRB- denotes ]
T12973 323-325 CD denotes 59
T12972 322-323 -LRB- denotes [
T12971 319-321 NN denotes RA
T12970 316-318 IN denotes of
T12969 303-315 NN denotes pathogenesis
T12968 299-302 DT denotes the
T12967 295-298 CC denotes and
T12966 284-294 NN denotes signalling
T12965 278-283 NN denotes NF-κB
T12964 275-277 IN denotes of
T12963 264-274 NN denotes regulation
T12962 255-263 NN denotes feedback
T12961 246-254 JJ denotes negative
T12960 242-245 DT denotes the
T12959 239-241 IN denotes in
T12958 237-238 -COMMA- denotes ,
T12957 234-237 NN denotes A20
T12956 229-233 IN denotes with
T12955 220-228 RB denotes together
T12954 218-219 -COMMA- denotes ,
T12953 212-218 NN denotes ABIN-1
T12952 208-211 IN denotes for
T12951 203-207 NN denotes role
T12950 193-202 JJ denotes potential
T12949 191-192 DT denotes a
T12948 180-190 VB denotes indicating
T12947 178-179 -COMMA- denotes ,
T12946 170-178 NN denotes biopsies
T12945 163-169 NN denotes tissue
T12944 160-162 NN denotes RA
T12943 157-159 IN denotes in
T12942 148-156 VB denotes detected
T12941 143-147 VB denotes were
T12940 138-142 NN denotes mRNA
T12939 131-137 NN denotes ABIN-1
T12938 128-130 IN denotes of
T12937 121-127 NN denotes levels
T12936 116-120 JJ denotes high
T12935 112-115 CC denotes and
T12934 110-111 -COMMA- denotes ,
T12933 98-110 NN denotes synoviocytes
T12932 92-97 JJ denotes human
T12931 89-91 IN denotes in
T12930 83-88 NN denotes genes
T12929 71-82 JJ denotes TNF-induced
T12928 65-70 IN denotes among
T12927 54-64 VB denotes identified
T12926 50-53 VB denotes was
T12925 43-49 NN denotes ABIN-1
T12924 41-42 -COMMA- denotes ,
T12923 33-41 NN denotes analysis
T12922 22-32 NN denotes microarray
T12921 6-21 NN denotes oligonucleotide
T12920 0-5 VB denotes Using
R8555 T12923 T12920 arg2Of analysis,Using
R8556 T12923 T12921 arg1Of analysis,oligonucleotide
R8557 T12923 T12922 arg1Of analysis,microarray
R8558 T12925 T12920 arg1Of ABIN-1,Using
R8559 T12925 T12926 arg1Of ABIN-1,was
R8560 T12925 T12927 arg2Of ABIN-1,identified
R8561 T12927 T12926 arg2Of identified,was
R8562 T12927 T12928 arg1Of identified,among
R8563 T12927 T12931 arg1Of identified,in
R8564 T12927 T12935 arg1Of identified,and
R8565 T12930 T12928 arg2Of genes,among
R8566 T12930 T12929 arg1Of genes,TNF-induced
R8567 T12933 T12931 arg2Of synoviocytes,in
R8568 T12933 T12932 arg1Of synoviocytes,human
R8569 T12935 T12920 modOf and,Using
R8570 T12935 T12924 arg1Of and,","
R8571 T12935 T12934 arg1Of and,","
R8572 T12937 T12936 arg1Of levels,high
R8573 T12937 T12938 arg1Of levels,of
R8574 T12937 T12941 arg1Of levels,were
R8575 T12937 T12942 arg2Of levels,detected
R8576 T12940 T12938 arg2Of mRNA,of
R8577 T12940 T12939 arg1Of mRNA,ABIN-1
R8578 T12942 T12935 arg2Of detected,and
R8579 T12942 T12941 arg2Of detected,were
R8580 T12942 T12943 arg1Of detected,in
R8581 T12942 T12947 arg1Of detected,","
R8582 T12942 T12948 modOf detected,indicating
R8583 T12946 T12943 arg2Of biopsies,in
R8584 T12946 T12944 arg1Of biopsies,RA
R8585 T12946 T12945 arg1Of biopsies,tissue
R8586 T12951 T12948 arg2Of role,indicating
R8587 T12951 T12949 arg1Of role,a
R8588 T12951 T12950 arg1Of role,potential
R8589 T12951 T12952 arg1Of role,for
R8590 T12951 T12956 arg1Of role,with
R8591 T12951 T12958 arg1Of role,","
R8592 T12951 T12959 arg1Of role,in
R8593 T12952 T12954 arg1Of for,","
R8594 T12953 T12952 arg2Of ABIN-1,for
R8595 T12956 T12954 arg2Of with,","
R8596 T12956 T12955 arg1Of with,together
R8597 T12957 T12956 arg2Of A20,with
R8598 T12963 T12960 arg1Of regulation,the
R8599 T12963 T12961 arg1Of regulation,negative
R8600 T12963 T12962 arg1Of regulation,feedback
R8601 T12963 T12964 arg1Of regulation,of
R8602 T12963 T12967 arg1Of regulation,and
R8603 T12966 T12964 arg2Of signalling,of
R8604 T12966 T12965 arg1Of signalling,NF-κB
R8605 T12967 T12959 arg2Of and,in
R8606 T12969 T12967 arg2Of pathogenesis,and
R8607 T12969 T12968 arg1Of pathogenesis,the
R8608 T12969 T12970 arg1Of pathogenesis,of
R8609 T12971 T12970 arg2Of RA,of
R8610 T12971 T12972 arg1Of RA,[
R8611 T12973 T12972 arg2Of 59,[
R8612 T12974 T12972 arg3Of ],[

UBERON-AE

Id Subject Object Predicate Lexical cue
T12641 163-169 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue

GO-BP

Id Subject Object Predicate Lexical cue
T13131 303-315 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T13130 284-294 http://purl.obolibrary.org/obo/GO_0023052 denotes signalling
T13129 278-294 http://purl.obolibrary.org/obo/GO_0038061 denotes NF-κB signalling
T13128 264-294 http://purl.obolibrary.org/obo/GO_1901222 denotes regulation of NF-κB signalling
T13123 264-274 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation

sentences

Id Subject Object Predicate Lexical cue
T12649 0-327 Sentence denotes Using oligonucleotide microarray analysis, ABIN-1 was identified among TNF-induced genes in human synoviocytes, and high levels of ABIN-1 mRNA were detected in RA tissue biopsies, indicating a potential role for ABIN-1, together with A20, in the negative feedback regulation of NF-κB signalling and the pathogenesis of RA [59].
T133 0-327 Sentence denotes Using oligonucleotide microarray analysis, ABIN-1 was identified among TNF-induced genes in human synoviocytes, and high levels of ABIN-1 mRNA were detected in RA tissue biopsies, indicating a potential role for ABIN-1, together with A20, in the negative feedback regulation of NF-κB signalling and the pathogenesis of RA [59].

simple1

Id Subject Object Predicate Lexical cue
T13197 234-237 Protein denotes A20
T13196 212-218 Protein denotes ABIN-1
T13195 131-137 Protein denotes ABIN-1
T13194 71-74 Protein denotes TNF
T13193 43-49 Protein denotes ABIN-1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T13886 75-82 Positive_regulation denotes induced
T13885 121-127 Transcription denotes levels
T13870 234-237 Protein denotes A20
T13869 212-218 Protein denotes ABIN-1
T13868 131-137 Protein denotes ABIN-1
T13867 71-74 Protein denotes TNF
T13866 43-49 Protein denotes ABIN-1
R9277 T13867 T13886 themeOf TNF,induced
R9278 T13868 T13885 themeOf ABIN-1,levels

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13672 75-82 Positive_regulation denotes induced
T13655 234-237 Protein denotes A20
T13654 212-218 Protein denotes ABIN-1
T13653 131-137 Protein denotes ABIN-1
T13652 71-74 Protein denotes TNF
T13651 43-49 Protein denotes ABIN-1
R9172 T13652 T13672 themeOf TNF,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T13954 71-111 Localization denotes TNF-induced genes in human synoviocytes,
T13953 71-111 Gene_expression denotes TNF-induced genes in human synoviocytes,
T13952 71-111 Positive_regulation denotes TNF-induced genes in human synoviocytes,
T13943 43-49 Protein denotes ABIN-1
T13941 212-219 Protein denotes ABIN-1,
T13937 275-294 Protein denotes of NF-κB signalling
T13932 71-111 Protein denotes TNF-induced genes in human synoviocytes,
T13931 160-162 Protein denotes RA
T13926 234-326 Protein denotes A20, in the negative feedback regulation of NF-κB signalling and the pathogenesis of RA [59]
T13911 92-111 Entity denotes human synoviocytes,
T13910 131-142 Protein denotes ABIN-1 mRNA
T13901 131-137 Protein denotes ABIN-1
T13898 71-82 Protein denotes TNF-induced
T13897 319-321 Protein denotes RA
T13890 0-41 Entity denotes Using oligonucleotide microarray analysis
R9283 T13898 T13952 causeOf TNF-induced,"TNF-induced genes in human synoviocytes,"
R9286 T13911 T13954 locationOf "human synoviocytes,","TNF-induced genes in human synoviocytes,"
R9289 T13932 T13952 themeOf "TNF-induced genes in human synoviocytes,","TNF-induced genes in human synoviocytes,"
R9290 T13932 T13953 themeOf "TNF-induced genes in human synoviocytes,","TNF-induced genes in human synoviocytes,"
R9291 T13932 T13954 themeOf "TNF-induced genes in human synoviocytes,","TNF-induced genes in human synoviocytes,"

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13789 121-127 Positive_regulation denotes levels
T13788 278-283 Protein denotes NF-κB
T13787 131-142 Protein denotes ABIN-1 mRNA
T13786 71-74 Protein denotes TNF
R9229 T13787 T13789 themeOf ABIN-1 mRNA,levels

test3

Id Subject Object Predicate Lexical cue
T12635 234-237 Protein denotes A20
T12634 212-218 Protein denotes ABIN-1
T12633 203-207 Regulation denotes role
T12632 131-137 Protein denotes ABIN-1
T12631 116-120 Positive_regulation denotes high
T12630 75-82 Positive_regulation denotes induced
T12629 71-74 Protein denotes TNF
T12628 43-49 Protein denotes ABIN-1
T12591 234-237 Protein denotes A20
T12590 212-218 Protein denotes ABIN-1
T12589 131-137 Protein denotes ABIN-1
T12588 71-74 Protein denotes TNF
T12587 43-49 Protein denotes ABIN-1
R8334 T12630 T12633 themeOf induced,role
R8335 T12634 T12633 causeOf ABIN-1,role