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PMC:3218875 / 2116-2517 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1132 294-296 TO denotes to
T1131 286-293 VBZ denotes appears
T1130 275-285 NN denotes activation
T1129 269-274 JJ denotes NF-κB
T1128 266-268 IN denotes of
T1127 259-265 NN denotes course
T1126 254-258 NN denotes time
T1125 250-253 DT denotes The
T1124 248-249 . denotes .
T1123 247-248 -RRB- denotes )
T1122 246-247 NNP denotes ]
T1121 245-246 CD denotes 4
T1120 244-245 NNP denotes [
T1119 241-243 IN denotes in
T1118 232-240 VBN denotes reviewed
T1117 231-232 -LRB- denotes (
T1116 228-230 NNP denotes RA
T1115 225-227 IN denotes of
T1114 213-224 NN denotes progression
T1113 209-212 CC denotes and
T1112 197-208 NN denotes development
T1111 193-196 DT denotes the
T1110 190-192 IN denotes in
T1109 184-189 NN denotes NF-κB
T1108 181-183 IN denotes of
T1107 176-180 NN denotes role
T1106 169-175 JJ denotes active
T1105 165-168 DT denotes the
T1104 153-164 VBP denotes demonstrate
T1103 148-152 RB denotes also
T1102 138-147 NNS denotes arthritis
T1101 125-137 JJ denotes inflammatory
T1100 122-124 IN denotes of
T1099 115-121 NNS denotes models
T1098 108-114 NN denotes animal
T1097 104-107 CC denotes and
T1096 102-103 , denotes ,
T1095 94-102 NNS denotes patients
T1094 91-93 NNP denotes RA
T1093 86-90 IN denotes from
T1092 79-85 NN denotes tissue
T1091 70-78 JJ denotes synovial
T1090 66-69 CC denotes and
T1089 54-65 NNS denotes fibroblasts
T1088 45-53 JJ denotes synovial
T1087 36-44 JJ denotes cultured
T1086 33-35 IN denotes in
T1085 24-32 VBN denotes detected
T1084 21-23 VB denotes be
T1083 17-20 MD denotes can
T1082 6-16 NN denotes activation
T1081 0-5 JJ denotes NF-κB
T1152 400-401 . denotes .
T1151 399-400 NNP denotes ]
T1150 396-399 CD denotes 5,6
T1149 395-396 NNP denotes [
T1148 386-394 NN denotes severity
T1147 378-385 NN denotes disease
T1146 368-377 VBZ denotes decreases
T1145 362-367 NNS denotes means
T1144 352-361 JJ denotes different
T1143 349-351 IN denotes by
T1142 343-348 NN denotes NF-κB
T1141 340-342 IN denotes of
T1140 331-339 NN denotes blockade
T1139 327-330 CC denotes and
T1138 325-326 , denotes ,
T1137 318-325 NN denotes disease
T1136 315-317 IN denotes of
T1135 309-314 NN denotes onset
T1134 305-308 DT denotes the
T1133 297-304 VB denotes precede
R891 T1081 T1082 amod NF-κB,activation
R892 T1082 T1085 nsubjpass activation,detected
R893 T1083 T1085 aux can,detected
R894 T1084 T1085 auxpass be,detected
R895 T1085 T1104 ccomp detected,demonstrate
R896 T1086 T1085 prep in,detected
R897 T1087 T1089 amod cultured,fibroblasts
R898 T1088 T1089 amod synovial,fibroblasts
R899 T1089 T1086 pobj fibroblasts,in
R900 T1090 T1089 cc and,fibroblasts
R901 T1091 T1092 amod synovial,tissue
R902 T1092 T1089 conj tissue,fibroblasts
R903 T1093 T1092 prep from,tissue
R904 T1094 T1095 compound RA,patients
R905 T1095 T1093 pobj patients,from
R906 T1096 T1092 punct ",",tissue
R907 T1097 T1092 cc and,tissue
R908 T1098 T1099 compound animal,models
R909 T1099 T1104 nsubj models,demonstrate
R910 T1100 T1099 prep of,models
R911 T1101 T1102 amod inflammatory,arthritis
R912 T1102 T1100 pobj arthritis,of
R913 T1103 T1104 advmod also,demonstrate
R914 T1104 T1104 ROOT demonstrate,demonstrate
R915 T1105 T1107 det the,role
R916 T1106 T1107 amod active,role
R917 T1107 T1104 dobj role,demonstrate
R918 T1108 T1107 prep of,role
R919 T1109 T1108 pobj NF-κB,of
R920 T1110 T1107 prep in,role
R921 T1111 T1112 det the,development
R922 T1112 T1110 pobj development,in
R923 T1113 T1112 cc and,development
R924 T1114 T1112 conj progression,development
R925 T1115 T1112 prep of,development
R926 T1116 T1115 pobj RA,of
R927 T1117 T1107 punct (,role
R928 T1118 T1107 acl reviewed,role
R929 T1119 T1118 prep in,reviewed
R930 T1120 T1119 pobj [,in
R931 T1121 T1122 nummod 4,]
R932 T1122 T1120 appos ],[
R933 T1123 T1120 punct ),[
R934 T1124 T1104 punct .,demonstrate
R935 T1125 T1127 det The,course
R936 T1126 T1127 compound time,course
R937 T1127 T1131 nsubj course,appears
R938 T1128 T1127 prep of,course
R939 T1129 T1130 amod NF-κB,activation
R940 T1130 T1128 pobj activation,of
R941 T1131 T1131 ROOT appears,appears
R942 T1132 T1133 aux to,precede
R943 T1133 T1131 xcomp precede,appears
R944 T1134 T1135 det the,onset
R945 T1135 T1133 dobj onset,precede
R946 T1136 T1135 prep of,onset
R947 T1137 T1136 pobj disease,of
R948 T1138 T1135 punct ",",onset
R949 T1139 T1135 cc and,onset
R950 T1140 T1135 conj blockade,onset
R951 T1141 T1135 prep of,onset
R952 T1142 T1141 pobj NF-κB,of
R953 T1143 T1133 prep by,precede
R954 T1144 T1145 amod different,means
R955 T1145 T1143 pobj means,by
R956 T1146 T1131 conj decreases,appears
R957 T1147 T1148 compound disease,severity
R958 T1148 T1146 dobj severity,decreases
R959 T1149 T1151 compound [,]
R960 T1150 T1151 compound "5,6",]
R961 T1151 T1151 ROOT ],]
R962 T1152 T1131 punct .,appears

2_test

Id Subject Object Predicate Lexical cue
21639951-18853343-4289428 245-246 18853343 denotes 4
21639951-9892501-4289429 396-397 9892501 denotes 5
21639951-15899029-4289430 398-399 15899029 denotes 6

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T668 305-308 DT denotes the
T667 297-304 VB denotes precede
T666 294-296 TO denotes to
T665 286-293 VB denotes appears
T664 275-285 NN denotes activation
T663 269-274 NN denotes NF-κB
T662 266-268 IN denotes of
T661 259-265 NN denotes course
T660 254-258 NN denotes time
T659 250-253 DT denotes The
T658 247-248 -RRB- denotes )
T657 246-247 -RRB- denotes ]
T656 245-246 CD denotes 4
T655 244-245 -LRB- denotes [
T654 241-243 IN denotes in
T653 232-240 VB denotes reviewed
T652 231-232 -LRB- denotes (
T651 228-230 NN denotes RA
T650 225-227 IN denotes of
T649 213-224 NN denotes progression
T648 209-212 CC denotes and
T647 197-208 NN denotes development
T646 193-196 DT denotes the
T645 190-192 IN denotes in
T644 184-189 NN denotes NF-κB
T643 181-183 IN denotes of
T642 176-180 NN denotes role
T641 169-175 JJ denotes active
T640 165-168 DT denotes the
T639 153-164 VB denotes demonstrate
T638 148-152 RB denotes also
T637 138-147 NN denotes arthritis
T636 125-137 JJ denotes inflammatory
T635 122-124 IN denotes of
T634 115-121 NN denotes models
T633 108-114 NN denotes animal
T632 104-107 CC denotes and
T631 102-103 -COMMA- denotes ,
T630 94-102 NN denotes patients
T629 91-93 NN denotes RA
T628 86-90 IN denotes from
T627 79-85 NN denotes tissue
T626 70-78 JJ denotes synovial
T625 66-69 CC denotes and
T624 54-65 NN denotes fibroblasts
T623 45-53 JJ denotes synovial
T622 36-44 VB denotes cultured
T621 33-35 IN denotes in
T620 24-32 VB denotes detected
T619 21-23 VB denotes be
T618 17-20 MD denotes can
T617 6-16 NN denotes activation
T616 0-5 NN denotes NF-κB
T685 399-400 -RRB- denotes ]
T684 396-399 CD denotes 5,6
T683 395-396 -LRB- denotes [
T682 386-394 NN denotes severity
T681 378-385 NN denotes disease
T680 368-377 VB denotes decreases
T679 362-367 NN denotes means
T678 352-361 JJ denotes different
T677 349-351 IN denotes by
T676 343-348 NN denotes NF-κB
T675 340-342 IN denotes of
T674 331-339 NN denotes blockade
T673 327-330 CC denotes and
T672 325-326 -COMMA- denotes ,
T671 318-325 NN denotes disease
T670 315-317 IN denotes of
T669 309-314 NN denotes onset
R481 T617 T616 arg1Of activation,NF-κB
R482 T617 T618 arg1Of activation,can
R483 T617 T619 arg1Of activation,be
R484 T617 T620 arg2Of activation,detected
R485 T620 T618 arg2Of detected,can
R486 T620 T619 arg2Of detected,be
R487 T620 T621 arg1Of detected,in
R488 T620 T632 arg1Of detected,and
R489 T624 T622 arg2Of fibroblasts,cultured
R490 T624 T623 arg1Of fibroblasts,synovial
R491 T624 T625 arg1Of fibroblasts,and
R492 T625 T621 arg2Of and,in
R493 T627 T625 arg2Of tissue,and
R494 T627 T626 arg1Of tissue,synovial
R495 T627 T628 arg1Of tissue,from
R496 T630 T628 arg2Of patients,from
R497 T630 T629 arg1Of patients,RA
R498 T632 T631 arg1Of and,","
R499 T634 T633 arg1Of models,animal
R500 T634 T635 arg1Of models,of
R501 T634 T639 arg1Of models,demonstrate
R502 T637 T635 arg2Of arthritis,of
R503 T637 T636 arg1Of arthritis,inflammatory
R504 T639 T632 arg2Of demonstrate,and
R505 T639 T638 arg1Of demonstrate,also
R506 T642 T639 arg2Of role,demonstrate
R507 T642 T640 arg1Of role,the
R508 T642 T641 arg1Of role,active
R509 T642 T643 arg1Of role,of
R510 T642 T645 arg1Of role,in
R511 T642 T652 arg1Of role,(
R512 T644 T643 arg2Of NF-κB,of
R513 T647 T648 arg1Of development,and
R514 T648 T645 arg2Of and,in
R515 T648 T646 arg1Of and,the
R516 T648 T650 arg1Of and,of
R517 T649 T648 arg2Of progression,and
R518 T651 T650 arg2Of RA,of
R519 T653 T652 arg2Of reviewed,(
R520 T653 T654 arg1Of reviewed,in
R521 T653 T655 arg1Of reviewed,[
R522 T656 T655 arg2Of 4,[
R523 T657 T655 arg3Of ],[
R524 T658 T652 arg3Of ),(
R525 T661 T659 arg1Of course,The
R526 T661 T660 arg1Of course,time
R527 T661 T662 arg1Of course,of
R528 T661 T665 arg1Of course,appears
R529 T661 T667 arg1Of course,precede
R530 T664 T662 arg2Of activation,of
R531 T664 T663 arg1Of activation,NF-κB
R532 T665 T673 arg1Of appears,and
R533 T667 T665 arg2Of precede,appears
R534 T667 T666 arg1Of precede,to
R535 T669 T667 arg2Of onset,precede
R536 T669 T668 arg1Of onset,the
R537 T669 T670 arg1Of onset,of
R538 T671 T670 arg2Of disease,of
R539 T673 T672 arg1Of and,","
R540 T674 T675 arg1Of blockade,of
R541 T674 T677 arg1Of blockade,by
R542 T674 T680 arg1Of blockade,decreases
R543 T676 T675 arg2Of NF-κB,of
R544 T679 T677 arg2Of means,by
R545 T679 T678 arg1Of means,different
R546 T680 T673 arg2Of decreases,and
R547 T680 T683 arg1Of decreases,[
R548 T682 T680 arg2Of severity,decreases
R549 T682 T681 arg1Of severity,disease
R550 T684 T683 arg2Of "5,6",[
R551 T685 T683 arg3Of ],[

UBERON-AE

Id Subject Object Predicate Lexical cue
T323 79-85 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue

GO-BP

Id Subject Object Predicate Lexical cue
T789 197-208 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T784 269-285 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation
T783 0-16 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation

sentences

Id Subject Object Predicate Lexical cue
T332 250-401 Sentence denotes The time course of NF-κB activation appears to precede the onset of disease, and blockade of NF-κB by different means decreases disease severity [5,6].
T331 0-249 Sentence denotes NF-κB activation can be detected in cultured synovial fibroblasts and synovial tissue from RA patients, and animal models of inflammatory arthritis also demonstrate the active role of NF-κB in the development and progression of RA (reviewed in [4]).
T14 0-249 Sentence denotes NF-κB activation can be detected in cultured synovial fibroblasts and synovial tissue from RA patients, and animal models of inflammatory arthritis also demonstrate the active role of NF-κB in the development and progression of RA (reviewed in [4]).
T15 250-401 Sentence denotes The time course of NF-κB activation appears to precede the onset of disease, and blockade of NF-κB by different means decreases disease severity [5,6].

ICD10

Id Subject Object Predicate Lexical cue
T802 138-147 http://purl.bioontology.org/ontology/ICD10/M13.9 denotes arthritis

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1589 0-102 Positive_regulation denotes NF-κB activation can be detected in cultured synovial fibroblasts and synovial tissue from RA patients
T1582 91-93 Protein denotes RA
T1572 225-230 Protein denotes of RA
T1557 0-5 Protein denotes NF-κB
T1552 181-189 Protein denotes of NF-κB
T1550 340-348 Protein denotes of NF-κB
T1535 36-65 Entity denotes cultured synovial fibroblasts
R1263 T1557 T1589 themeOf NF-κB,NF-κB activation can be detected in cultured synovial fibroblasts and synovial tissue from RA patients

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1365 184-189 Protein denotes NF-κB
T1364 0-5 Protein denotes NF-κB
T1367 269-274 Protein denotes NF-κB
T1366 6-16 Positive_regulation denotes activation
T1370 331-339 Negative_regulation denotes blockade
T1369 275-285 Positive_regulation denotes activation
T1368 343-348 Protein denotes NF-κB
R1096 T1364 T1366 themeOf NF-κB,activation
R1097 T1367 T1369 themeOf NF-κB,activation
R1099 T1368 T1370 themeOf NF-κB,blockade