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PMC:3218875 / 19433-19748 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T9485 42-49 Negative_regulation denotes lacking
T9443 244-247 Protein denotes A20
T9442 210-213 Protein denotes TNF
T9441 50-53 Protein denotes A20
R6339 T9441 T9485 themeOf A20,lacking

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11154 314-315 . denotes .
T11153 313-314 NNP denotes ]
T11152 311-313 CD denotes 47
T11151 310-311 NNP denotes [
T11150 299-309 NN denotes epithelium
T11149 288-298 JJ denotes intestinal
T11148 284-287 DT denotes the
T11147 281-283 IN denotes in
T11146 273-280 NN denotes protein
T11145 259-272 JJ denotes antiapoptotic
T11144 253-258 JJ denotes major
T11143 251-252 DT denotes a
T11142 248-250 IN denotes as
T11141 244-247 NNP denotes A20
T11140 233-243 VBG denotes confirming
T11139 231-232 , denotes ,
T11138 222-231 NN denotes apoptosis
T11137 210-221 JJ denotes TNF-induced
T11136 207-209 TO denotes to
T11135 201-206 NNS denotes cells
T11134 190-200 JJ denotes epithelial
T11133 179-189 JJ denotes intestinal
T11132 173-178 PRP$ denotes their
T11131 170-172 IN denotes of
T11130 153-169 NN denotes hypersensitivity
T11129 149-152 DT denotes the
T11128 146-148 TO denotes to
T11127 142-145 JJ denotes due
T11126 134-141 NNS denotes colitis
T11125 121-133 JJ denotes experimental
T11124 118-120 TO denotes to
T11123 103-117 NN denotes susceptibility
T11122 93-102 VBN denotes increased
T11121 85-92 VBP denotes exhibit
T11120 79-84 NNS denotes cells
T11119 68-78 JJ denotes epithelial
T11118 57-67 JJ denotes intestinal
T11117 54-56 IN denotes in
T11116 50-53 NNP denotes A20
T11115 42-49 VBG denotes lacking
T11114 29-41 RB denotes specifically
T11113 24-28 NNS denotes mice
T11112 19-23 IN denotes that
T11111 12-18 VBD denotes showed
T11110 3-11 RB denotes recently
T11109 0-2 PRP denotes We
R7482 T11109 T11111 nsubj We,showed
R7483 T11110 T11111 advmod recently,showed
R7484 T11111 T11111 ROOT showed,showed
R7485 T11112 T11121 mark that,exhibit
R7486 T11113 T11121 nsubj mice,exhibit
R7487 T11114 T11115 advmod specifically,lacking
R7488 T11115 T11113 acl lacking,mice
R7489 T11116 T11115 dobj A20,lacking
R7490 T11117 T11115 prep in,lacking
R7491 T11118 T11120 amod intestinal,cells
R7492 T11119 T11120 amod epithelial,cells
R7493 T11120 T11117 pobj cells,in
R7494 T11121 T11111 ccomp exhibit,showed
R7495 T11122 T11123 amod increased,susceptibility
R7496 T11123 T11121 dobj susceptibility,exhibit
R7497 T11124 T11121 prep to,exhibit
R7498 T11125 T11126 amod experimental,colitis
R7499 T11126 T11124 pobj colitis,to
R7500 T11127 T11126 amod due,colitis
R7501 T11128 T11127 pcomp to,due
R7502 T11129 T11130 det the,hypersensitivity
R7503 T11130 T11128 pobj hypersensitivity,to
R7504 T11131 T11130 prep of,hypersensitivity
R7505 T11132 T11135 poss their,cells
R7506 T11133 T11135 amod intestinal,cells
R7507 T11134 T11135 amod epithelial,cells
R7508 T11135 T11131 pobj cells,of
R7509 T11136 T11127 pcomp to,due
R7510 T11137 T11138 amod TNF-induced,apoptosis
R7511 T11138 T11136 pobj apoptosis,to
R7512 T11139 T11121 punct ",",exhibit
R7513 T11140 T11121 advcl confirming,exhibit
R7514 T11141 T11140 dobj A20,confirming
R7515 T11142 T11140 prep as,confirming
R7516 T11143 T11146 det a,protein
R7517 T11144 T11146 amod major,protein
R7518 T11145 T11146 amod antiapoptotic,protein
R7519 T11146 T11142 pobj protein,as
R7520 T11147 T11146 prep in,protein
R7521 T11148 T11151 det the,[
R7522 T11149 T11150 amod intestinal,epithelium
R7523 T11150 T11151 compound epithelium,[
R7524 T11151 T11147 pobj [,in
R7525 T11152 T11153 nummod 47,]
R7526 T11153 T11151 appos ],[
R7527 T11154 T11111 punct .,showed

DLUT931

Id Subject Object Predicate Lexical cue
T11903 42-49 Negative_regulation denotes lacking
T11862 244-247 Protein denotes A20
T11861 210-213 Protein denotes TNF
T11860 50-53 Protein denotes A20
R8114 T11860 T11903 themeOf A20,lacking

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11722 210-213 http://www.uniprot.org/uniprot/P01375 denotes TNF
T11698 244-247 http://www.uniprot.org/uniprot/P21580 denotes A20
T11697 50-53 http://www.uniprot.org/uniprot/P21580 denotes A20

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9786 210-213 Protein denotes TNF
T9785 50-53 Protein denotes A20
T9787 244-247 Protein denotes A20

2_test

Id Subject Object Predicate Lexical cue
21639951-20530205-4289471 311-313 20530205 denotes 47

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10107 313-314 -RRB- denotes ]
T10106 311-313 CD denotes 47
T10105 310-311 -LRB- denotes [
T10104 299-309 NN denotes epithelium
T10103 288-298 JJ denotes intestinal
T10102 284-287 DT denotes the
T10101 281-283 IN denotes in
T10100 273-280 NN denotes protein
T10099 259-272 JJ denotes antiapoptotic
T10098 253-258 JJ denotes major
T10097 251-252 DT denotes a
T10096 248-250 IN denotes as
T10095 244-247 NN denotes A20
T10094 233-243 VB denotes confirming
T10093 231-232 -COMMA- denotes ,
T10092 222-231 NN denotes apoptosis
T10091 210-221 JJ denotes TNF-induced
T10090 207-209 TO denotes to
T10089 201-206 NN denotes cells
T10088 190-200 JJ denotes epithelial
T10087 179-189 JJ denotes intestinal
T10086 173-178 PRP-DOLLAR- denotes their
T10085 170-172 IN denotes of
T10084 153-169 NN denotes hypersensitivity
T10083 149-152 DT denotes the
T10082 146-148 TO denotes to
T10081 142-145 JJ denotes due
T10080 134-141 NN denotes colitis
T10079 121-133 JJ denotes experimental
T10078 118-120 TO denotes to
T10077 103-117 NN denotes susceptibility
T10076 93-102 VB denotes increased
T10075 85-92 VB denotes exhibit
T10074 79-84 NN denotes cells
T10073 68-78 JJ denotes epithelial
T10072 57-67 JJ denotes intestinal
T10071 54-56 IN denotes in
T10070 50-53 NN denotes A20
T10069 42-49 VB denotes lacking
T10068 29-41 RB denotes specifically
T10067 24-28 NN denotes mice
T10066 19-23 IN denotes that
T10065 12-18 VB denotes showed
T10064 3-11 RB denotes recently
T10063 0-2 PRP denotes We
R6655 T10063 T10065 arg1Of We,showed
R6656 T10065 T10064 arg1Of showed,recently
R6657 T10067 T10069 arg1Of mice,lacking
R6658 T10067 T10075 arg1Of mice,exhibit
R6659 T10069 T10068 arg1Of lacking,specifically
R6660 T10069 T10071 arg1Of lacking,in
R6661 T10070 T10069 arg2Of A20,lacking
R6662 T10074 T10071 arg2Of cells,in
R6663 T10074 T10072 arg1Of cells,intestinal
R6664 T10074 T10073 arg1Of cells,epithelial
R6665 T10075 T10065 arg2Of exhibit,showed
R6666 T10075 T10066 arg1Of exhibit,that
R6667 T10075 T10093 arg1Of exhibit,","
R6668 T10075 T10094 modOf exhibit,confirming
R6669 T10077 T10075 arg2Of susceptibility,exhibit
R6670 T10077 T10076 arg2Of susceptibility,increased
R6671 T10077 T10078 arg1Of susceptibility,to
R6672 T10077 T10082 arg1Of susceptibility,to
R6673 T10080 T10078 arg2Of colitis,to
R6674 T10080 T10079 arg1Of colitis,experimental
R6675 T10082 T10081 arg1Of to,due
R6676 T10084 T10082 arg2Of hypersensitivity,to
R6677 T10084 T10083 arg1Of hypersensitivity,the
R6678 T10084 T10085 arg1Of hypersensitivity,of
R6679 T10084 T10090 arg1Of hypersensitivity,to
R6680 T10089 T10085 arg2Of cells,of
R6681 T10089 T10086 arg1Of cells,their
R6682 T10089 T10087 arg1Of cells,intestinal
R6683 T10089 T10088 arg1Of cells,epithelial
R6684 T10092 T10090 arg2Of apoptosis,to
R6685 T10092 T10091 arg1Of apoptosis,TNF-induced
R6686 T10094 T10096 arg1Of confirming,as
R6687 T10094 T10105 arg1Of confirming,[
R6688 T10095 T10094 arg2Of A20,confirming
R6689 T10100 T10096 arg2Of protein,as
R6690 T10100 T10097 arg1Of protein,a
R6691 T10100 T10098 arg1Of protein,major
R6692 T10100 T10099 arg1Of protein,antiapoptotic
R6693 T10100 T10101 arg1Of protein,in
R6694 T10104 T10101 arg2Of epithelium,in
R6695 T10104 T10102 arg1Of epithelium,the
R6696 T10104 T10103 arg1Of epithelium,intestinal
R6697 T10106 T10105 arg2Of 47,[
R6698 T10107 T10105 arg3Of ],[

UBERON-AE

Id Subject Object Predicate Lexical cue
T9638 299-309 http://purl.obolibrary.org/obo/UBERON_0000483 denotes epithelium
T9637 288-309 http://purl.obolibrary.org/obo/UBERON_0001277 denotes intestinal epithelium
T9636 179-200 http://purl.obolibrary.org/obo/UBERON_0001277 denotes intestinal epithelial
T9635 57-78 http://purl.obolibrary.org/obo/UBERON_0001277 denotes intestinal epithelial
T9634 288-298 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal
T9633 179-189 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal
T9632 57-67 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal

GO-BP

Id Subject Object Predicate Lexical cue
T10677 153-169 http://purl.obolibrary.org/obo/GO_0002524 denotes hypersensitivity
T10676 179-206 http://purl.obolibrary.org/obo/GO_0060576 denotes intestinal epithelial cells
T10675 57-84 http://purl.obolibrary.org/obo/GO_0060576 denotes intestinal epithelial cells
T10674 179-206 http://purl.obolibrary.org/obo/GO_0060575 denotes intestinal epithelial cells
T10673 57-84 http://purl.obolibrary.org/obo/GO_0060575 denotes intestinal epithelial cells
T10672 179-206 http://purl.obolibrary.org/obo/GO_0060574 denotes intestinal epithelial cells
T10671 57-84 http://purl.obolibrary.org/obo/GO_0060574 denotes intestinal epithelial cells
T10670 179-206 http://purl.obolibrary.org/obo/GO_0061582 denotes intestinal epithelial cells
T10669 57-84 http://purl.obolibrary.org/obo/GO_0061582 denotes intestinal epithelial cells
T10666 222-231 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T10663 222-231 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis

sentences

Id Subject Object Predicate Lexical cue
T9651 0-315 Sentence denotes We recently showed that mice specifically lacking A20 in intestinal epithelial cells exhibit increased susceptibility to experimental colitis due to the hypersensitivity of their intestinal epithelial cells to TNF-induced apoptosis, confirming A20 as a major antiapoptotic protein in the intestinal epithelium [47].
T108 0-315 Sentence denotes We recently showed that mice specifically lacking A20 in intestinal epithelial cells exhibit increased susceptibility to experimental colitis due to the hypersensitivity of their intestinal epithelial cells to TNF-induced apoptosis, confirming A20 as a major antiapoptotic protein in the intestinal epithelium [47].

simple1

Id Subject Object Predicate Lexical cue
T10763 244-247 Protein denotes A20
T10762 210-213 Protein denotes TNF
T10761 50-53 Protein denotes A20

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T12254 42-49 Negative_regulation denotes lacking
T12209 244-247 Protein denotes A20
T12208 210-213 Protein denotes TNF
T12207 50-53 Protein denotes A20
R8241 T12207 T12254 themeOf A20,lacking

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T11772 244-247 Protein denotes A20
T11771 210-213 Protein denotes TNF
T11770 50-53 Protein denotes A20
T11814 42-49 Negative_regulation denotes lacking
T11813 214-221 Positive_regulation denotes induced
R8045 T11770 T11814 themeOf A20,lacking
R8047 T11771 T11813 themeOf TNF,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12418 251-314 Localization denotes a major antiapoptotic protein in the intestinal epithelium [47]
T12380 173-206 Entity denotes their intestinal epithelial cells
T12366 251-314 Protein denotes a major antiapoptotic protein in the intestinal epithelium [47]
T12313 19-28 Protein denotes that mice
T12311 244-247 Protein denotes A20
T12307 210-221 Protein denotes TNF-induced
T12304 50-53 Protein denotes A20
T12303 57-84 Entity denotes intestinal epithelial cells
R8283 T12366 T12418 themeOf a major antiapoptotic protein in the intestinal epithelium [47],a major antiapoptotic protein in the intestinal epithelium [47]

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11962 210-213 Protein denotes TNF

test3

Id Subject Object Predicate Lexical cue
T9593 244-247 Protein denotes A20
T9592 210-213 Protein denotes TNF
T9591 50-53 Protein denotes A20
T9590 42-49 Negative_regulation denotes lacking
T9525 244-247 Protein denotes A20
T9524 210-213 Protein denotes TNF
T9523 50-53 Protein denotes A20
R6366 T9591 T9590 themeOf A20,lacking