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PMC:3218875 / 18275-18483 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T9478 176-188 Binding denotes interactions
T9477 142-150 Negative_regulation denotes disrupts
T9425 129-134 Protein denotes MALT1
T9424 119-124 Protein denotes TRAF6
T9423 113-117 Protein denotes RIP2
T9422 107-111 Protein denotes RIP1
T9421 0-3 Protein denotes A20
R6327 T9421 T9477 causeOf A20,disrupts
R6328 T9423 T9477 causeOf RIP2,disrupts
R6329 T9424 T9477 causeOf TRAF6,disrupts
R6330 T9425 T9477 causeOf MALT1,disrupts
R6356 T9478 T9477 themeOf interactions,disrupts

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10948 207-208 . denotes .
T10947 206-207 -RRB- denotes )
T10946 205-206 CD denotes 1
T10945 198-204 NNP denotes Figure
T10944 197-198 -LRB- denotes (
T10943 195-196 NNP denotes ]
T10942 190-195 CD denotes 38-41
T10941 189-190 NNP denotes [
T10940 176-188 NNS denotes interactions
T10939 160-175 NN denotes protein-protein
T10938 151-159 JJ denotes specific
T10937 142-150 VBZ denotes disrupts
T10936 136-141 WDT denotes which
T10935 134-135 , denotes ,
T10934 129-134 NNP denotes MALT1
T10933 125-128 CC denotes and
T10932 119-124 NNP denotes TRAF6
T10931 117-118 , denotes ,
T10930 113-117 NNP denotes RIP2
T10929 111-112 , denotes ,
T10928 107-111 NNP denotes RIP1
T10927 104-106 IN denotes as
T10926 99-103 JJ denotes such
T10925 97-98 , denotes ,
T10924 88-97 NNS denotes molecules
T10923 77-87 VBG denotes signalling
T10922 71-76 NN denotes NF-κB
T10921 62-70 JJ denotes specific
T10920 45-61 VBG denotes deubiquitinating
T10919 42-44 IN denotes by
T10918 33-41 NN denotes function
T10917 27-32 JJ denotes NF-κB
T10916 19-26 VB denotes inhibit
T10915 16-18 TO denotes to
T10914 7-15 VBN denotes believed
T10913 4-6 VBZ denotes is
T10912 0-3 CD denotes A20
R7285 T10912 T10914 nsubjpass A20,believed
R7286 T10913 T10914 auxpass is,believed
R7287 T10914 T10914 ROOT believed,believed
R7288 T10915 T10916 aux to,inhibit
R7289 T10916 T10914 xcomp inhibit,believed
R7290 T10917 T10918 amod NF-κB,function
R7291 T10918 T10916 dobj function,inhibit
R7292 T10919 T10916 prep by,inhibit
R7293 T10920 T10919 pcomp deubiquitinating,by
R7294 T10921 T10924 amod specific,molecules
R7295 T10922 T10923 npadvmod NF-κB,signalling
R7296 T10923 T10924 amod signalling,molecules
R7297 T10924 T10920 dobj molecules,deubiquitinating
R7298 T10925 T10924 punct ",",molecules
R7299 T10926 T10927 amod such,as
R7300 T10927 T10924 prep as,molecules
R7301 T10928 T10927 pobj RIP1,as
R7302 T10929 T10928 punct ",",RIP1
R7303 T10930 T10928 conj RIP2,RIP1
R7304 T10931 T10930 punct ",",RIP2
R7305 T10932 T10930 conj TRAF6,RIP2
R7306 T10933 T10932 cc and,TRAF6
R7307 T10934 T10932 conj MALT1,TRAF6
R7308 T10935 T10928 punct ",",RIP1
R7309 T10936 T10937 nsubj which,disrupts
R7310 T10937 T10928 relcl disrupts,RIP1
R7311 T10938 T10940 amod specific,interactions
R7312 T10939 T10940 amod protein-protein,interactions
R7313 T10940 T10937 dobj interactions,disrupts
R7314 T10941 T10943 nmod [,]
R7315 T10942 T10943 nummod 38-41,]
R7316 T10943 T10940 nmod ],interactions
R7317 T10944 T10945 punct (,Figure
R7318 T10945 T10943 appos Figure,]
R7319 T10946 T10945 nummod 1,Figure
R7320 T10947 T10943 punct ),]
R7321 T10948 T10914 punct .,believed

DLUT931

Id Subject Object Predicate Lexical cue
T11844 113-117 Protein denotes RIP2
T11843 107-111 Protein denotes RIP1
T11842 0-3 Protein denotes A20
T11841 129-134 Protein denotes MALT1
T11840 119-124 Protein denotes TRAF6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11731 129-134 http://www.uniprot.org/uniprot/Q9UDY8 denotes MALT1
T11729 119-124 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6
T11728 107-111 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T11689 0-3 http://www.uniprot.org/uniprot/P21580 denotes A20

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9769 129-134 Protein denotes MALT1
T9768 119-124 Protein denotes TRAF6
T9767 113-117 Protein denotes RIP2
T9766 107-111 Protein denotes RIP1
T9765 0-3 Protein denotes A20

2_test

Id Subject Object Predicate Lexical cue
21639951-15258597-4289467 190-192 15258597 denotes 38
21639951-18342009-4289467 190-192 18342009 denotes 38
21639951-15334086-4289467 190-192 15334086 denotes 38
21639951-19494296-4289467 190-192 19494296 denotes 38

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9908 206-207 -RRB- denotes )
T9907 205-206 CD denotes 1
T9906 198-204 NN denotes Figure
T9905 197-198 -LRB- denotes (
T9904 195-196 -RRB- denotes ]
T9903 190-195 CD denotes 38-41
T9902 189-190 -LRB- denotes [
T9901 176-188 NN denotes interactions
T9900 160-175 JJ denotes protein-protein
T9899 151-159 JJ denotes specific
T9898 142-150 VB denotes disrupts
T9897 136-141 WDT denotes which
T9896 134-135 -COMMA- denotes ,
T9895 129-134 NN denotes MALT1
T9894 125-128 CC denotes and
T9893 119-124 NN denotes TRAF6
T9892 117-118 -COMMA- denotes ,
T9891 113-117 NN denotes RIP2
T9890 111-112 -COMMA- denotes ,
T9889 107-111 NN denotes RIP1
T9888 104-106 IN denotes as
T9887 99-103 JJ denotes such
T9886 97-98 -COMMA- denotes ,
T9885 88-97 NN denotes molecules
T9884 77-87 NN denotes signalling
T9883 71-76 NN denotes NF-κB
T9882 62-70 JJ denotes specific
T9881 45-61 VB denotes deubiquitinating
T9880 42-44 IN denotes by
T9879 33-41 NN denotes function
T9878 27-32 NN denotes NF-κB
T9877 19-26 VB denotes inhibit
T9876 16-18 TO denotes to
T9875 7-15 VB denotes believed
T9874 4-6 VB denotes is
T9873 0-3 NN denotes A20
R6464 T9873 T9874 arg1Of A20,is
R6465 T9873 T9875 arg2Of A20,believed
R6466 T9873 T9877 arg1Of A20,inhibit
R6467 T9873 T9881 arg1Of A20,deubiquitinating
R6468 T9875 T9874 arg2Of believed,is
R6469 T9877 T9875 arg3Of inhibit,believed
R6470 T9877 T9876 arg1Of inhibit,to
R6471 T9877 T9880 arg1Of inhibit,by
R6472 T9879 T9877 arg2Of function,inhibit
R6473 T9879 T9878 arg1Of function,NF-κB
R6474 T9881 T9880 arg2Of deubiquitinating,by
R6475 T9885 T9881 arg2Of molecules,deubiquitinating
R6476 T9885 T9882 arg1Of molecules,specific
R6477 T9885 T9883 arg1Of molecules,NF-κB
R6478 T9885 T9884 arg1Of molecules,signalling
R6479 T9885 T9886 arg1Of molecules,","
R6480 T9885 T9888 arg1Of molecules,as
R6481 T9888 T9887 arg1Of as,such
R6482 T9889 T9890 arg1Of RIP1,","
R6483 T9890 T9892 arg1Of ",",","
R6484 T9891 T9890 arg2Of RIP2,","
R6485 T9892 T9894 arg1Of ",",and
R6486 T9893 T9892 arg2Of TRAF6,","
R6487 T9894 T9888 arg2Of and,as
R6488 T9894 T9896 arg1Of and,","
R6489 T9894 T9897 arg1Of and,which
R6490 T9894 T9898 arg1Of and,disrupts
R6491 T9895 T9894 arg2Of MALT1,and
R6492 T9898 T9902 arg1Of disrupts,[
R6493 T9898 T9905 arg1Of disrupts,(
R6494 T9901 T9898 arg2Of interactions,disrupts
R6495 T9901 T9899 arg1Of interactions,specific
R6496 T9901 T9900 arg1Of interactions,protein-protein
R6497 T9903 T9902 arg2Of 38-41,[
R6498 T9904 T9902 arg3Of ],[
R6499 T9906 T9905 arg2Of Figure,(
R6500 T9906 T9907 arg1Of Figure,1
R6501 T9908 T9905 arg3Of ),(

GO-BP

Id Subject Object Predicate Lexical cue
T10630 77-87 http://purl.obolibrary.org/obo/GO_0023052 denotes signalling
T10627 71-87 http://purl.obolibrary.org/obo/GO_0038061 denotes NF-κB signalling
T10625 19-32 http://purl.obolibrary.org/obo/GO_0007252 denotes inhibit NF-κB
T10623 19-32 http://purl.obolibrary.org/obo/GO_0032088 denotes inhibit NF-κB

sentences

Id Subject Object Predicate Lexical cue
T9644 0-208 Sentence denotes A20 is believed to inhibit NF-κB function by deubiquitinating specific NF-κB signalling molecules, such as RIP1, RIP2, TRAF6 and MALT1, which disrupts specific protein-protein interactions [38-41] (Figure 1).
T101 0-208 Sentence denotes A20 is believed to inhibit NF-κB function by deubiquitinating specific NF-κB signalling molecules, such as RIP1, RIP2, TRAF6 and MALT1, which disrupts specific protein-protein interactions [38-41] (Figure 1).

simple1

Id Subject Object Predicate Lexical cue
T10745 129-134 Protein denotes MALT1
T10744 119-124 Protein denotes TRAF6
T10743 113-117 Protein denotes RIP2
T10742 107-111 Protein denotes RIP1
T10741 0-3 Protein denotes A20

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T12244 176-188 Binding denotes interactions
T12191 113-117 Protein denotes RIP2
T12190 107-111 Protein denotes RIP1
T12189 0-3 Protein denotes A20
T12188 129-134 Protein denotes MALT1
T12187 119-124 Protein denotes TRAF6
R8226 T12191 T12244 themeOf RIP2,interactions

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T11754 113-117 Protein denotes RIP2
T11753 107-111 Protein denotes RIP1
T11752 0-3 Protein denotes A20
T11751 129-134 Protein denotes MALT1
T11750 119-124 Protein denotes TRAF6

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12395 62-98 Protein denotes specific NF-κB signalling molecules,
T12386 27-32 Protein denotes NF-κB
T12384 113-117 Protein denotes RIP2
T12381 107-111 Protein denotes RIP1
T12318 62-98 Entity denotes specific NF-κB signalling molecules,
T12297 119-124 Protein denotes TRAF6
T12296 0-3 Protein denotes A20
T12280 129-135 Protein denotes MALT1,

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11941 176-188 Binding denotes interactions
T11940 45-61 Positive_regulation denotes deubiquitinating
T11939 45-61 Positive_regulation denotes deubiquitinating
T11938 45-61 Positive_regulation denotes deubiquitinating
T11937 45-61 Positive_regulation denotes deubiquitinating
T11936 45-61 Positive_regulation denotes deubiquitinating
T11935 19-26 Negative_regulation denotes inhibit
T11934 129-134 Protein denotes MALT1
T11933 119-124 Protein denotes TRAF6
T11932 113-117 Protein denotes RIP2
T11931 107-111 Protein denotes RIP1
T11930 71-76 Protein denotes NF-κB
T11929 27-32 Protein denotes NF-κB
T11928 0-3 Protein denotes A20
R8131 T11929 T11935 themeOf NF-κB,inhibit
R8133 T11930 T11936 themeOf NF-κB,deubiquitinating
R8134 T11931 T11937 themeOf RIP1,deubiquitinating
R8135 T11931 T11941 themeOf RIP1,interactions
R8136 T11932 T11938 themeOf RIP2,deubiquitinating
R8138 T11933 T11939 themeOf TRAF6,deubiquitinating
R8139 T11934 T11940 themeOf MALT1,deubiquitinating
R8140 T11935 T11928 Cause inhibit,A20

test3

Id Subject Object Predicate Lexical cue
T9571 176-188 Binding denotes interactions
T9507 129-134 Protein denotes MALT1
T9506 119-124 Protein denotes TRAF6
T9505 113-117 Protein denotes RIP2
T9504 107-111 Protein denotes RIP1
T9503 0-3 Protein denotes A20
T9570 142-150 Negative_regulation denotes disrupts
T9569 129-134 Protein denotes MALT1
T9568 119-124 Protein denotes TRAF6
T9567 113-117 Protein denotes RIP2
T9566 107-111 Protein denotes RIP1
T9565 0-3 Protein denotes A20
R6359 T9566 T9571 themeOf RIP1,interactions
R6360 T9567 T9571 themeOf RIP2,interactions
R6361 T9568 T9571 themeOf TRAF6,interactions
R6362 T9569 T9571 themeOf MALT1,interactions
R6363 T9571 T9570 themeOf interactions,disrupts