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PMC:3218875 / 1798-1921 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T279 38-48 Gene_expression denotes expression
T278 25-33 Regulation denotes regulate
T269 103-120 Protein denotes cyclo-oxygenase-2
T268 97-101 Protein denotes IL-6
T267 86-89 Protein denotes TNF
R210 T267 T279 themeOf TNF,expression
R211 T268 T279 themeOf IL-6,expression
R212 T269 T279 themeOf cyclo-oxygenase-2,expression
R219 T279 T278 themeOf expression,regulate

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1042 120-121 , denotes ,
T1041 103-120 JJ denotes cyclo-oxygenase-2
T1040 101-102 , denotes ,
T1039 97-101 NNP denotes IL-6
T1038 95-96 , denotes ,
T1037 91-95 NNP denotes IL-1
T1036 89-90 , denotes ,
T1035 86-89 NNP denotes TNF
T1034 83-85 IN denotes as
T1033 78-82 JJ denotes such
T1032 76-77 : denotes -
T1031 70-75 NNS denotes genes
T1030 67-69 IN denotes of
T1029 60-66 NN denotes number
T1028 54-59 JJ denotes large
T1027 52-53 DT denotes a
T1026 49-51 IN denotes of
T1025 38-48 NN denotes expression
T1024 34-37 DT denotes the
T1023 25-33 VB denotes regulate
T1022 20-24 IN denotes that
T1021 16-19 CC denotes and
T1020 14-15 , denotes ,
T1019 13-14 NNP denotes ]
T1018 12-13 CD denotes 1
T1017 11-12 VBP denotes [
R827 T1017 T1019 nmod [,]
R828 T1018 T1019 nummod 1,]
R830 T1020 T1019 punct ",",]
R832 T1022 T1023 mark that,regulate
R834 T1024 T1025 det the,expression
R835 T1025 T1023 dobj expression,regulate
R836 T1026 T1025 prep of,expression
R837 T1027 T1029 det a,number
R838 T1028 T1029 amod large,number
R839 T1029 T1026 pobj number,of
R840 T1030 T1029 prep of,number
R841 T1031 T1030 pobj genes,of
R842 T1032 T1031 punct -,genes
R843 T1033 T1034 amod such,as
R844 T1034 T1031 prep as,genes
R845 T1035 T1034 pobj TNF,as
R846 T1036 T1035 punct ",",TNF
R847 T1037 T1035 conj IL-1,TNF
R848 T1038 T1037 punct ",",IL-1
R849 T1039 T1037 conj IL-6,IL-1
R850 T1040 T1039 punct ",",IL-6
R851 T1041 T1039 conj cyclo-oxygenase-2,IL-6
R852 T1042 T1041 punct ",",cyclo-oxygenase-2

DLUT931

Id Subject Object Predicate Lexical cue
T1402 25-33 Regulation denotes regulate
T1401 38-48 Gene_expression denotes expression
T1393 86-89 Protein denotes TNF
T1384 103-120 Protein denotes cyclo-oxygenase-2
T1383 97-101 Protein denotes IL-6
R1117 T1383 T1401 themeOf IL-6,expression
R1118 T1384 T1401 themeOf cyclo-oxygenase-2,expression
R1120 T1393 T1401 themeOf TNF,expression
R1122 T1401 T1402 themeOf expression,regulate
R1123 T1401 T1402 themeOf expression,regulate
R1124 T1401 T1402 themeOf expression,regulate
R1125 T1401 T1402 themeOf expression,regulate

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1276 97-101 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T1274 86-89 http://www.uniprot.org/uniprot/P01375 denotes TNF

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T365 103-120 Protein denotes cyclo-oxygenase-2
T364 97-101 Protein denotes IL-6
T363 86-89 Protein denotes TNF

2_test

Id Subject Object Predicate Lexical cue
21639951-18267068-4289426 12-13 18267068 denotes 1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T579 120-121 -COMMA- denotes ,
T578 103-120 NN denotes cyclo-oxygenase-2
T577 101-102 -COMMA- denotes ,
T576 97-101 NN denotes IL-6
T575 95-96 -COMMA- denotes ,
T574 91-95 NN denotes IL-1
T573 89-90 -COMMA- denotes ,
T572 86-89 NN denotes TNF
T571 83-85 IN denotes as
T570 78-82 JJ denotes such
T569 76-77 -COLON- denotes -
T568 70-75 NN denotes genes
T567 67-69 IN denotes of
T566 60-66 NN denotes number
T565 54-59 JJ denotes large
T564 52-53 DT denotes a
T563 49-51 IN denotes of
T562 38-48 NN denotes expression
T561 34-37 DT denotes the
T560 25-33 VB denotes regulate
T559 20-24 WDT denotes that
T558 16-19 CC denotes and
T557 14-15 -COMMA- denotes ,
T556 13-14 -RRB- denotes ]
T555 12-13 CD denotes 1
T554 11-12 -LRB- denotes [
R424 T555 T554 arg2Of 1,[
R425 T556 T554 arg3Of ],[
R426 T558 T557 arg1Of and,","
R427 T560 T558 arg2Of regulate,and
R428 T562 T560 arg2Of expression,regulate
R429 T562 T561 arg1Of expression,the
R430 T562 T563 arg1Of expression,of
R431 T566 T563 arg2Of number,of
R432 T566 T564 arg1Of number,a
R433 T566 T565 arg1Of number,large
R434 T566 T567 arg1Of number,of
R435 T568 T567 arg2Of genes,of
R436 T571 T570 arg1Of as,such
R437 T572 T573 arg1Of TNF,","
R438 T573 T575 arg1Of ",",","
R439 T574 T573 arg2Of IL-1,","
R440 T575 T577 arg1Of ",",","
R441 T576 T575 arg2Of IL-6,","
R442 T577 T579 arg1Of ",",","
R443 T578 T577 arg2Of cyclo-oxygenase-2,","

GO-BP

Id Subject Object Predicate Lexical cue
T790 109-118 http://purl.obolibrary.org/obo/GO_0016701 denotes oxygenase

GO-MF

Id Subject Object Predicate Lexical cue
T807 109-118 http://purl.obolibrary.org/obo/GO_0016701 denotes oxygenase
T806 97-101 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T804 91-95 http://purl.obolibrary.org/obo/GO_0005149 denotes IL-1

simple1

Id Subject Object Predicate Lexical cue
T823 103-120 Protein denotes cyclo-oxygenase-2
T822 97-101 Protein denotes IL-6
T821 86-89 Protein denotes TNF

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1526 38-48 Gene_expression denotes expression
T1525 25-33 Regulation denotes regulate
T1517 86-89 Protein denotes TNF
T1508 103-120 Protein denotes cyclo-oxygenase-2
T1507 97-101 Protein denotes IL-6
R1206 T1507 T1526 themeOf IL-6,expression
R1254 T1508 T1526 themeOf cyclo-oxygenase-2,expression
R1256 T1517 T1526 themeOf TNF,expression
R1259 T1526 T1525 themeOf expression,regulate
R1260 T1526 T1525 themeOf expression,regulate
R1261 T1526 T1525 themeOf expression,regulate
R1262 T1526 T1525 themeOf expression,regulate

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1299 25-33 Regulation denotes regulate
T1298 38-48 Gene_expression denotes expression
T1290 86-89 Protein denotes TNF
T1281 103-120 Protein denotes cyclo-oxygenase-2
T1280 97-101 Protein denotes IL-6
R1058 T1281 T1298 themeOf cyclo-oxygenase-2,expression
R1064 T1298 T1299 themeOf expression,regulate

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1571 70-85 Protein denotes genes - such as
T1569 91-95 Protein denotes IL-1
T1553 86-96 Protein denotes TNF, IL-1,
T1542 103-120 Protein denotes cyclo-oxygenase-2
T1529 97-121 Protein denotes IL-6, cyclo-oxygenase-2,

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1341 25-33 Regulation denotes regulate
T1340 25-33 Regulation denotes regulate
T1313 103-120 Protein denotes cyclo-oxygenase-2
T1312 97-101 Protein denotes IL-6
T1311 91-95 Protein denotes IL-1
T1310 86-89 Protein denotes TNF
T1339 25-33 Regulation denotes regulate
T1338 25-33 Regulation denotes regulate
T1337 25-33 Regulation denotes regulate
T1336 25-33 Regulation denotes regulate
T1335 25-33 Regulation denotes regulate
T1334 25-33 Regulation denotes regulate
T1333 25-33 Regulation denotes regulate
T1332 25-33 Regulation denotes regulate
T1331 25-33 Regulation denotes regulate
T1330 25-33 Regulation denotes regulate
T1329 25-33 Regulation denotes regulate
T1328 25-33 Regulation denotes regulate
T1327 25-33 Regulation denotes regulate
T1326 25-33 Regulation denotes regulate
T1325 25-33 Regulation denotes regulate
T1324 25-33 Regulation denotes regulate
T1323 25-33 Regulation denotes regulate
T1321 38-48 Gene_expression denotes expression
T1320 38-48 Gene_expression denotes expression
T1319 38-48 Gene_expression denotes expression
T1318 38-48 Gene_expression denotes expression
T1317 38-48 Gene_expression denotes expression
T1316 38-48 Gene_expression denotes expression
T1349 25-33 Regulation denotes regulate
T1348 25-33 Regulation denotes regulate
T1347 25-33 Regulation denotes regulate
T1346 25-33 Regulation denotes regulate
T1345 25-33 Regulation denotes regulate
T1344 25-33 Regulation denotes regulate
T1343 25-33 Regulation denotes regulate
T1342 25-33 Regulation denotes regulate
T1358 25-33 Regulation denotes regulate
T1357 25-33 Regulation denotes regulate
T1356 25-33 Regulation denotes regulate
T1355 25-33 Regulation denotes regulate
T1354 25-33 Regulation denotes regulate
T1353 25-33 Regulation denotes regulate
T1352 25-33 Regulation denotes regulate
T1351 25-33 Regulation denotes regulate
T1350 25-33 Regulation denotes regulate
R1057 T1310 T1316 themeOf TNF,expression
R1060 T1311 T1317 themeOf IL-1,expression
R1061 T1312 T1318 themeOf IL-6,expression
R1062 T1313 T1319 themeOf cyclo-oxygenase-2,expression
R1067 T1316 T1323 themeOf expression,regulate
R1068 T1316 T1329 themeOf expression,regulate
R1069 T1316 T1335 themeOf expression,regulate
R1070 T1316 T1341 themeOf expression,regulate
R1071 T1316 T1347 themeOf expression,regulate
R1073 T1316 T1353 themeOf expression,regulate
R1074 T1317 T1324 themeOf expression,regulate
R1082 T1317 T1330 themeOf expression,regulate
R1098 T1317 T1336 themeOf expression,regulate
R1100 T1317 T1342 themeOf expression,regulate
R1101 T1317 T1348 themeOf expression,regulate
R1102 T1317 T1354 themeOf expression,regulate
R1103 T1318 T1325 themeOf expression,regulate
R1107 T1318 T1331 themeOf expression,regulate
R1108 T1318 T1337 themeOf expression,regulate
R1109 T1318 T1343 themeOf expression,regulate
R1110 T1318 T1349 themeOf expression,regulate
R1111 T1318 T1355 themeOf expression,regulate
R1112 T1319 T1326 themeOf expression,regulate
R1127 T1319 T1332 themeOf expression,regulate
R1128 T1319 T1338 themeOf expression,regulate
R1129 T1319 T1344 themeOf expression,regulate
R1130 T1319 T1350 themeOf expression,regulate
R1131 T1319 T1356 themeOf expression,regulate
R1132 T1320 T1327 themeOf expression,regulate
R1133 T1320 T1333 themeOf expression,regulate
R1134 T1320 T1339 themeOf expression,regulate
R1135 T1320 T1345 themeOf expression,regulate
R1136 T1320 T1351 themeOf expression,regulate
R1137 T1320 T1357 themeOf expression,regulate
R1138 T1321 T1328 themeOf expression,regulate
R1139 T1321 T1334 themeOf expression,regulate
R1140 T1321 T1340 themeOf expression,regulate
R1141 T1321 T1346 themeOf expression,regulate
R1142 T1321 T1352 themeOf expression,regulate
R1143 T1321 T1358 themeOf expression,regulate

test3

Id Subject Object Predicate Lexical cue
T312 103-120 Protein denotes cyclo-oxygenase-2
T311 97-101 Protein denotes IL-6
T310 86-89 Protein denotes TNF
T309 38-48 Gene_expression denotes expression
T308 25-33 Regulation denotes regulate
T291 103-120 Protein denotes cyclo-oxygenase-2
T290 97-101 Protein denotes IL-6
T289 86-89 Protein denotes TNF
R223 T309 T308 themeOf expression,regulate
R224 T310 T309 themeOf TNF,expression
R225 T311 T309 themeOf IL-6,expression
R226 T312 T309 themeOf cyclo-oxygenase-2,expression