PMC:3218875 / 1654-2184 JSONTXT

Annnotations TAB JSON ListView MergeView

    testone

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    bionlp-st-ge-2016-spacy-parsed

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related and evolutionarily conserved proteins (p100 or NF-κB2, p105 or NF-κB1, p65 or RelA, RelB, c-Rel) that function as homodimers or heterodimers [1], and that regulate the expression of a large number of genes - such as TNF, IL-1, IL-6, cyclo-oxygenase-2, chemokines, inducible nitric oxide synthase, and matrix metalloproteinases - that are involved in RA. In addition, TNF and IL-1 are themselves very potent activators of NF-κB (reviewed in [2,3]).\nNF-κB activation can be detected in cultured synovial fibroblasts an"}

    DLUT931

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    bionlp-st-ge-2016-uniprot

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    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T367","span":{"begin":381,"end":384},"obj":"Protein"},{"id":"T366","span":{"begin":278,"end":309},"obj":"Protein"},{"id":"T365","span":{"begin":247,"end":264},"obj":"Protein"},{"id":"T364","span":{"begin":241,"end":245},"obj":"Protein"},{"id":"T363","span":{"begin":230,"end":233},"obj":"Protein"},{"id":"T362","span":{"begin":104,"end":109},"obj":"Protein"},{"id":"T361","span":{"begin":98,"end":102},"obj":"Protein"},{"id":"T360","span":{"begin":92,"end":96},"obj":"Protein"},{"id":"T359","span":{"begin":85,"end":88},"obj":"Protein"},{"id":"T358","span":{"begin":77,"end":83},"obj":"Protein"},{"id":"T357","span":{"begin":69,"end":73},"obj":"Protein"},{"id":"T356","span":{"begin":61,"end":67},"obj":"Protein"},{"id":"T355","span":{"begin":53,"end":57},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"rally related and evolutionarily conserved proteins (p100 or NF-κB2, p105 or NF-κB1, p65 or RelA, RelB, c-Rel) that function as homodimers or heterodimers [1], and that regulate the expression of a large number of genes - such as TNF, IL-1, IL-6, cyclo-oxygenase-2, chemokines, inducible nitric oxide synthase, and matrix metalloproteinases - that are involved in RA. In addition, TNF and IL-1 are themselves very potent activators of NF-κB (reviewed in [2,3]).\nNF-κB activation can be detected in cultured synovial fibroblasts an"}

    2_test

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    pmc-enju-pas

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related and evolutionarily conserved proteins (p100 or NF-κB2, p105 or NF-κB1, p65 or RelA, RelB, c-Rel) that function as homodimers or heterodimers [1], and that regulate the expression of a large number of genes - such as TNF, IL-1, IL-6, cyclo-oxygenase-2, chemokines, inducible nitric oxide synthase, and matrix metalloproteinases - that are involved in RA. In addition, TNF and IL-1 are themselves very potent activators of NF-κB (reviewed in [2,3]).\nNF-κB activation can be detected in cultured synovial fibroblasts an"}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T794","span":{"begin":288,"end":309},"obj":"http://purl.obolibrary.org/obo/GO_0051001"},{"id":"T793","span":{"begin":288,"end":309},"obj":"http://purl.obolibrary.org/obo/GO_0050999"},{"id":"T792","span":{"begin":288,"end":309},"obj":"http://purl.obolibrary.org/obo/GO_0051000"},{"id":"T791","span":{"begin":288,"end":309},"obj":"http://purl.obolibrary.org/obo/GO_0004517"},{"id":"T790","span":{"begin":253,"end":262},"obj":"http://purl.obolibrary.org/obo/GO_0016701"},{"id":"T783","span":{"begin":462,"end":478},"obj":"http://purl.obolibrary.org/obo/GO_0051092"},{"id":"T782","span":{"begin":421,"end":440},"obj":"http://purl.obolibrary.org/obo/GO_0051092"}],"text":"rally related and evolutionarily conserved proteins (p100 or NF-κB2, p105 or NF-κB1, p65 or RelA, RelB, c-Rel) that function as homodimers or heterodimers [1], and that regulate the expression of a large number of genes - such as TNF, IL-1, IL-6, cyclo-oxygenase-2, chemokines, inducible nitric oxide synthase, and matrix metalloproteinases - that are involved in RA. In addition, TNF and IL-1 are themselves very potent activators of NF-κB (reviewed in [2,3]).\nNF-κB activation can be detected in cultured synovial fibroblasts an"}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T809","span":{"begin":288,"end":309},"obj":"http://purl.obolibrary.org/obo/GO_0050998"},{"id":"T808","span":{"begin":288,"end":309},"obj":"http://purl.obolibrary.org/obo/GO_0004517"},{"id":"T807","span":{"begin":253,"end":262},"obj":"http://purl.obolibrary.org/obo/GO_0016701"},{"id":"T806","span":{"begin":241,"end":245},"obj":"http://purl.obolibrary.org/obo/GO_0005138"},{"id":"T805","span":{"begin":389,"end":393},"obj":"http://purl.obolibrary.org/obo/GO_0005149"},{"id":"T804","span":{"begin":235,"end":239},"obj":"http://purl.obolibrary.org/obo/GO_0005149"}],"text":"rally related and evolutionarily conserved proteins (p100 or NF-κB2, p105 or NF-κB1, p65 or RelA, RelB, c-Rel) that function as homodimers or heterodimers [1], and that regulate the expression of a large number of genes - such as TNF, IL-1, IL-6, cyclo-oxygenase-2, chemokines, inducible nitric oxide synthase, and matrix metalloproteinases - that are involved in RA. In addition, TNF and IL-1 are themselves very potent activators of NF-κB (reviewed in [2,3]).\nNF-κB activation can be detected in cultured synovial fibroblasts an"}

    sentences

    {"project":"sentences","denotations":[{"id":"T330","span":{"begin":368,"end":461},"obj":"Sentence"},{"id":"T13","span":{"begin":368,"end":461},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"rally related and evolutionarily conserved proteins (p100 or NF-κB2, p105 or NF-κB1, p65 or RelA, RelB, c-Rel) that function as homodimers or heterodimers [1], and that regulate the expression of a large number of genes - such as TNF, IL-1, IL-6, cyclo-oxygenase-2, chemokines, inducible nitric oxide synthase, and matrix metalloproteinases - that are involved in RA. In addition, TNF and IL-1 are themselves very potent activators of NF-κB (reviewed in [2,3]).\nNF-κB activation can be detected in cultured synovial fibroblasts an"}

    simple1

    {"project":"simple1","denotations":[{"id":"T825","span":{"begin":381,"end":384},"obj":"Protein"},{"id":"T824","span":{"begin":278,"end":309},"obj":"Protein"},{"id":"T823","span":{"begin":247,"end":264},"obj":"Protein"},{"id":"T822","span":{"begin":241,"end":245},"obj":"Protein"},{"id":"T821","span":{"begin":230,"end":233},"obj":"Protein"},{"id":"T820","span":{"begin":104,"end":109},"obj":"Protein"},{"id":"T819","span":{"begin":98,"end":102},"obj":"Protein"},{"id":"T818","span":{"begin":92,"end":96},"obj":"Protein"},{"id":"T817","span":{"begin":85,"end":88},"obj":"Protein"},{"id":"T816","span":{"begin":77,"end":83},"obj":"Protein"},{"id":"T815","span":{"begin":69,"end":73},"obj":"Protein"},{"id":"T814","span":{"begin":61,"end":67},"obj":"Protein"},{"id":"T813","span":{"begin":53,"end":57},"obj":"Protein"}],"text":"rally related and evolutionarily conserved proteins (p100 or NF-κB2, p105 or NF-κB1, p65 or RelA, RelB, c-Rel) that function as homodimers or heterodimers [1], and that regulate the expression of a large number of genes - such as TNF, IL-1, IL-6, cyclo-oxygenase-2, chemokines, inducible nitric oxide synthase, and matrix metalloproteinases - that are involved in RA. In addition, TNF and IL-1 are themselves very potent activators of NF-κB (reviewed in [2,3]).\nNF-κB activation can be detected in cultured synovial fibroblasts an"}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T1526","span":{"begin":182,"end":192},"obj":"Gene_expression"},{"id":"T1525","span":{"begin":169,"end":177},"obj":"Regulation"},{"id":"T1518","span":{"begin":381,"end":384},"obj":"Protein"},{"id":"T1517","span":{"begin":230,"end":233},"obj":"Protein"},{"id":"T1516","span":{"begin":104,"end":109},"obj":"Protein"},{"id":"T1515","span":{"begin":98,"end":102},"obj":"Protein"},{"id":"T1514","span":{"begin":92,"end":96},"obj":"Protein"},{"id":"T1513","span":{"begin":85,"end":88},"obj":"Protein"},{"id":"T1512","span":{"begin":77,"end":83},"obj":"Protein"},{"id":"T1511","span":{"begin":69,"end":73},"obj":"Protein"},{"id":"T1510","span":{"begin":61,"end":67},"obj":"Protein"},{"id":"T1509","span":{"begin":278,"end":309},"obj":"Protein"},{"id":"T1508","span":{"begin":247,"end":264},"obj":"Protein"},{"id":"T1507","span":{"begin":241,"end":245},"obj":"Protein"},{"id":"T1506","span":{"begin":53,"end":57},"obj":"Protein"}],"relations":[{"id":"R1206","pred":"themeOf","subj":"T1507","obj":"T1526"},{"id":"R1254","pred":"themeOf","subj":"T1508","obj":"T1526"},{"id":"R1255","pred":"themeOf","subj":"T1509","obj":"T1526"},{"id":"R1256","pred":"themeOf","subj":"T1517","obj":"T1526"},{"id":"R1259","pred":"themeOf","subj":"T1526","obj":"T1525"},{"id":"R1260","pred":"themeOf","subj":"T1526","obj":"T1525"},{"id":"R1261","pred":"themeOf","subj":"T1526","obj":"T1525"},{"id":"R1262","pred":"themeOf","subj":"T1526","obj":"T1525"}],"text":"rally related and evolutionarily conserved proteins (p100 or NF-κB2, p105 or NF-κB1, p65 or RelA, RelB, c-Rel) that function as homodimers or heterodimers [1], and that regulate the expression of a large number of genes - such as TNF, IL-1, IL-6, cyclo-oxygenase-2, chemokines, inducible nitric oxide synthase, and matrix metalloproteinases - that are involved in RA. In addition, TNF and IL-1 are themselves very potent activators of NF-κB (reviewed in [2,3]).\nNF-κB activation can be detected in cultured synovial fibroblasts an"}

    BioNLP16_Messiy

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    bionlp-st-ge-2016-test-ihmc

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