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PMC:3218875 / 15318-15606 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T3980 151-162 Protein_catabolism denotes proteolysis
T3979 138-143 Positive_regulation denotes leads
T3978 44-52 Binding denotes interact
T3977 5-12 Binding denotes binding
T3943 181-186 Protein denotes TRAF3
T3942 171-176 Protein denotes TRAF2
T3941 122-127 Protein denotes TRAF6
T3940 111-116 Protein denotes TRAF5
T3939 104-109 Protein denotes TRAF3
T3938 97-102 Protein denotes TRAF2
T3937 90-95 Protein denotes TRAF1
T3936 39-43 Protein denotes RANK
T3935 30-34 Protein denotes CD40
R2814 T3935 T3978 themeOf CD40,interact
R2815 T3935 T3977 themeOf CD40,binding
R2816 T3936 T3978 themeOf RANK,interact
R2817 T3937 T3978 themeOf TRAF1,interact
R2818 T3938 T3977 themeOf TRAF2,binding
R2819 T3938 T3978 themeOf TRAF2,interact
R2820 T3939 T3977 themeOf TRAF3,binding
R2821 T3939 T3978 themeOf TRAF3,interact
R2822 T3940 T3978 themeOf TRAF5,interact
R2823 T3940 T3977 themeOf TRAF5,binding
R2824 T3941 T3977 themeOf TRAF6,binding
R2825 T3941 T3978 themeOf TRAF6,interact
R2826 T3942 T3980 themeOf TRAF2,proteolysis
R2827 T3943 T3980 themeOf TRAF3,proteolysis
R2836 T3977 T3979 causeOf binding,leads
R2837 T3978 T3979 causeOf interact,leads
R2838 T3980 T3979 themeOf proteolysis,leads

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6812 287-288 . denotes .
T6811 282-287 IN denotes above
T6810 272-281 VBN denotes described
T6809 269-271 IN denotes as
T6808 261-268 NN denotes pathway
T6807 248-260 JJ denotes noncanonical
T6806 244-247 DT denotes the
T6805 241-243 IN denotes of
T6804 230-240 NN denotes activation
T6803 226-229 DT denotes the
T6802 223-225 IN denotes in
T6801 218-222 NN denotes step
T6800 208-217 JJ denotes important
T6799 205-207 DT denotes an
T6798 194-204 VBZ denotes represents
T6797 188-193 WDT denotes which
T6796 186-187 , denotes ,
T6795 181-186 CD denotes TRAF3
T6794 177-180 CC denotes and
T6793 171-176 CD denotes TRAF2
T6792 166-170 DT denotes both
T6791 163-165 IN denotes of
T6790 151-162 NN denotes proteolysis
T6789 147-150 DT denotes the
T6788 144-146 TO denotes to
T6787 138-143 VBZ denotes leads
T6786 133-137 DT denotes this
T6785 129-132 CC denotes and
T6784 127-128 , denotes ,
T6783 122-127 NNP denotes TRAF6
T6782 118-121 CC denotes and
T6781 116-117 , denotes ,
T6780 111-116 CD denotes TRAF5
T6779 109-110 , denotes ,
T6778 104-109 CD denotes TRAF3
T6777 102-103 , denotes ,
T6776 97-102 CD denotes TRAF2
T6775 95-96 , denotes ,
T6774 90-95 CD denotes TRAF1
T6773 80-89 VBG denotes including
T6772 78-79 , denotes ,
T6771 71-78 NNS denotes members
T6770 66-70 NNP denotes TRAF
T6769 58-65 JJ denotes several
T6768 53-57 IN denotes with
T6767 44-52 NN denotes interact
T6766 39-43 NNP denotes RANK
T6765 35-38 CC denotes and
T6764 30-34 NNP denotes CD40
T6763 28-29 , denotes ,
T6762 22-28 NN denotes ligand
T6761 16-21 PRP$ denotes their
T6760 13-15 IN denotes of
T6759 5-12 JJ denotes binding
T6758 0-4 IN denotes Upon
R4855 T6758 T6787 prep Upon,leads
R4856 T6759 T6758 pobj binding,Upon
R4857 T6760 T6759 prep of,binding
R4858 T6761 T6762 poss their,ligand
R4859 T6762 T6760 pobj ligand,of
R4860 T6763 T6762 punct ",",ligand
R4861 T6764 T6762 appos CD40,ligand
R4862 T6765 T6764 cc and,CD40
R4863 T6766 T6767 compound RANK,interact
R4864 T6767 T6787 nsubj interact,leads
R4865 T6768 T6767 prep with,interact
R4866 T6769 T6771 amod several,members
R4867 T6770 T6771 compound TRAF,members
R4868 T6771 T6768 pobj members,with
R4869 T6772 T6771 punct ",",members
R4870 T6773 T6771 prep including,members
R4871 T6774 T6773 pobj TRAF1,including
R4872 T6775 T6774 punct ",",TRAF1
R4873 T6776 T6774 conj TRAF2,TRAF1
R4874 T6777 T6771 punct ",",members
R4875 T6778 T6771 appos TRAF3,members
R4876 T6779 T6778 punct ",",TRAF3
R4877 T6780 T6778 conj TRAF5,TRAF3
R4878 T6781 T6767 punct ",",interact
R4879 T6782 T6767 cc and,interact
R4880 T6783 T6767 conj TRAF6,interact
R4881 T6784 T6783 punct ",",TRAF6
R4882 T6785 T6783 cc and,TRAF6
R4883 T6786 T6787 nsubj this,leads
R4884 T6787 T6787 ROOT leads,leads
R4885 T6788 T6787 prep to,leads
R4886 T6789 T6790 det the,proteolysis
R4887 T6790 T6788 pobj proteolysis,to
R4888 T6791 T6790 prep of,proteolysis
R4889 T6792 T6793 det both,TRAF2
R4890 T6793 T6791 pobj TRAF2,of
R4891 T6794 T6793 cc and,TRAF2
R4892 T6795 T6793 conj TRAF3,TRAF2
R4893 T6796 T6790 punct ",",proteolysis
R4894 T6797 T6798 nsubj which,represents
R4895 T6798 T6790 relcl represents,proteolysis
R4896 T6799 T6801 det an,step
R4897 T6800 T6801 amod important,step
R4898 T6801 T6798 dobj step,represents
R4899 T6802 T6801 prep in,step
R4900 T6803 T6804 det the,activation
R4901 T6804 T6802 pobj activation,in
R4902 T6805 T6804 prep of,activation
R4904 T6806 T6808 det the,pathway
R4908 T6807 T6808 amod noncanonical,pathway
R4912 T6808 T6805 pobj pathway,of
R4914 T6809 T6810 mark as,described
R4917 T6810 T6798 advcl described,represents
R4918 T6811 T6810 advmod above,described
R4920 T6812 T6787 punct .,leads

DLUT931

Id Subject Object Predicate Lexical cue
T7187 181-186 Protein denotes TRAF3
T7186 171-176 Protein denotes TRAF2
T7185 122-127 Protein denotes TRAF6
T7184 111-116 Protein denotes TRAF5
T7183 104-109 Protein denotes TRAF3
T7182 97-102 Protein denotes TRAF2
T7181 90-95 Protein denotes TRAF1
T7180 39-43 Protein denotes RANK
T7179 30-34 Protein denotes CD40
T7229 5-12 Binding denotes binding
R5095 T7179 T7229 themeOf CD40,binding
R5096 T7182 T7229 themeOf TRAF2,binding

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6910 171-176 http://www.uniprot.org/uniprot/Q12933 denotes TRAF2
T6909 97-102 http://www.uniprot.org/uniprot/Q12933 denotes TRAF2
T6940 22-34 http://www.uniprot.org/uniprot/P29965 denotes ligand, CD40
T6938 181-186 http://www.uniprot.org/uniprot/Q13114 denotes TRAF3
T6937 104-109 http://www.uniprot.org/uniprot/Q13114 denotes TRAF3
T6923 30-34 http://www.uniprot.org/uniprot/P25942 denotes CD40
T6919 122-127 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4563 171-176 Protein denotes TRAF2
T4562 122-127 Protein denotes TRAF6
T4561 111-116 Protein denotes TRAF5
T4560 104-109 Protein denotes TRAF3
T4559 97-102 Protein denotes TRAF2
T4558 90-95 Protein denotes TRAF1
T4557 39-43 Protein denotes RANK
T4556 30-34 Protein denotes CD40
T4564 181-186 Protein denotes TRAF3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5414 138-143 VB denotes leads
T5413 133-137 DT denotes this
T5412 129-132 CC denotes and
T5411 127-128 -COMMA- denotes ,
T5410 122-127 NN denotes TRAF6
T5409 118-121 CC denotes and
T5408 116-117 -COMMA- denotes ,
T5407 111-116 NN denotes TRAF5
T5406 109-110 -COMMA- denotes ,
T5405 104-109 NN denotes TRAF3
T5404 102-103 -COMMA- denotes ,
T5403 97-102 NN denotes TRAF2
T5402 95-96 -COMMA- denotes ,
T5401 90-95 NN denotes TRAF1
T5400 80-89 VB denotes including
T5399 78-79 -COMMA- denotes ,
T5398 71-78 NN denotes members
T5397 66-70 NN denotes TRAF
T5396 58-65 JJ denotes several
T5395 53-57 IN denotes with
T5394 44-52 VB denotes interact
T5393 39-43 NN denotes RANK
T5392 35-38 CC denotes and
T5391 30-34 NN denotes CD40
T5390 28-29 -COMMA- denotes ,
T5389 22-28 NN denotes ligand
T5388 16-21 PRP-DOLLAR- denotes their
T5387 13-15 IN denotes of
T5386 5-12 NN denotes binding
T5385 0-4 IN denotes Upon
T5438 282-287 RB denotes above
T5437 272-281 VB denotes described
T5436 269-271 IN denotes as
T5435 261-268 NN denotes pathway
T5434 248-260 JJ denotes noncanonical
T5433 244-247 DT denotes the
T5432 241-243 IN denotes of
T5431 230-240 NN denotes activation
T5430 226-229 DT denotes the
T5429 223-225 IN denotes in
T5428 218-222 NN denotes step
T5427 208-217 JJ denotes important
T5426 205-207 DT denotes an
T5425 194-204 VB denotes represents
T5424 188-193 WDT denotes which
T5423 186-187 -COMMA- denotes ,
T5422 181-186 NN denotes TRAF3
T5421 177-180 CC denotes and
T5420 171-176 NN denotes TRAF2
T5419 166-170 CC denotes both
T5418 163-165 IN denotes of
T5417 151-162 NN denotes proteolysis
T5416 147-150 DT denotes the
T5415 144-146 TO denotes to
R3887 T5431 T5429 arg2Of activation,in
R3888 T5431 T5430 arg1Of activation,the
R3889 T5431 T5432 arg1Of activation,of
R3890 T5435 T5432 arg2Of pathway,of
R3827 T5389 T5387 arg2Of ligand,of
R3828 T5389 T5388 arg1Of ligand,their
R3830 T5391 T5392 arg1Of CD40,and
R3832 T5392 T5394 arg1Of and,interact
R3833 T5393 T5392 arg2Of RANK,and
R3835 T5394 T5395 arg1Of interact,with
R3837 T5394 T5412 arg1Of interact,and
R3839 T5398 T5395 arg2Of members,with
R3840 T5398 T5396 arg1Of members,several
R3841 T5398 T5397 arg1Of members,TRAF
R3842 T5398 T5399 arg1Of members,","
R3843 T5398 T5400 arg1Of members,including
R3844 T5401 T5402 arg1Of TRAF1,","
R3845 T5402 T5404 arg1Of ",",","
R3846 T5403 T5402 arg2Of TRAF2,","
R3848 T5404 T5406 arg1Of ",",","
R3850 T5405 T5404 arg2Of TRAF3,","
R3851 T5406 T5409 arg1Of ",",and
R3852 T5407 T5406 arg2Of TRAF5,","
R3854 T5409 T5400 arg2Of and,including
R3855 T5409 T5408 arg1Of and,","
R3856 T5410 T5409 arg2Of TRAF6,and
R3858 T5412 T5385 arg1Of and,Upon
R3859 T5412 T5390 arg1Of and,","
R3860 T5412 T5411 arg1Of and,","
R3862 T5413 T5414 arg1Of this,leads
R3863 T5414 T5412 arg2Of leads,and
R3864 T5414 T5415 arg1Of leads,to
R3866 T5417 T5415 arg2Of proteolysis,to
R3867 T5417 T5416 arg1Of proteolysis,the
R3868 T5417 T5418 arg1Of proteolysis,of
R3869 T5417 T5423 arg1Of proteolysis,","
R3870 T5417 T5424 arg1Of proteolysis,which
R3871 T5417 T5425 arg1Of proteolysis,represents
R3872 T5420 T5421 arg1Of TRAF2,and
R3873 T5421 T5418 arg2Of and,of
R3874 T5421 T5419 arg1Of and,both
R3875 T5422 T5421 arg2Of TRAF3,and
R3877 T5425 T5436 arg1Of represents,as
R3880 T5428 T5425 arg2Of step,represents
R3881 T5428 T5426 arg1Of step,an
R3882 T5428 T5427 arg1Of step,important
R3883 T5428 T5429 arg1Of step,in
R3891 T5435 T5433 arg1Of pathway,the
R3892 T5435 T5434 arg1Of pathway,noncanonical
R3894 T5437 T5436 arg2Of described,as
R3895 T5437 T5438 arg1Of described,above
R3951 T5386 T5385 arg2Of binding,Upon
R3953 T5386 T5387 arg1Of binding,of

GO-BP

Id Subject Object Predicate Lexical cue
T5603 151-162 http://purl.obolibrary.org/obo/GO_0006508 denotes proteolysis

GO-MF

Id Subject Object Predicate Lexical cue
T5611 22-28 http://purl.obolibrary.org/obo/GO_0005488 denotes ligand

sentences

Id Subject Object Predicate Lexical cue
T4263 0-288 Sentence denotes Upon binding of their ligand, CD40 and RANK interact with several TRAF members, including TRAF1, TRAF2, TRAF3, TRAF5, and TRAF6, and this leads to the proteolysis of both TRAF2 and TRAF3, which represents an important step in the activation of the noncanonical pathway as described above.
T84 0-288 Sentence denotes Upon binding of their ligand, CD40 and RANK interact with several TRAF members, including TRAF1, TRAF2, TRAF3, TRAF5, and TRAF6, and this leads to the proteolysis of both TRAF2 and TRAF3, which represents an important step in the activation of the noncanonical pathway as described above.

simple1

Id Subject Object Predicate Lexical cue
T5893 181-186 Protein denotes TRAF3
T5892 171-176 Protein denotes TRAF2
T5891 122-127 Protein denotes TRAF6
T5890 111-116 Protein denotes TRAF5
T5889 104-109 Protein denotes TRAF3
T5888 97-102 Protein denotes TRAF2
T5887 90-95 Protein denotes TRAF1
T5886 39-43 Protein denotes RANK
T5885 30-34 Protein denotes CD40

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7964 44-52 Binding denotes interact
T7963 151-162 Protein_catabolism denotes proteolysis
T7922 181-186 Protein denotes TRAF3
T7921 171-176 Protein denotes TRAF2
T7920 122-127 Protein denotes TRAF6
T7919 111-116 Protein denotes TRAF5
T7918 104-109 Protein denotes TRAF3
T7917 97-102 Protein denotes TRAF2
T7916 90-95 Protein denotes TRAF1
T7915 39-43 Protein denotes RANK
T7914 30-34 Protein denotes CD40
R5504 T7914 T7964 themeOf CD40,interact
R5507 T7914 T7964 themeOf CD40,interact
R5509 T7914 T7964 themeOf CD40,interact
R5510 T7914 T7964 themeOf CD40,interact
R5512 T7914 T7964 themeOf CD40,interact
R5513 T7915 T7964 themeOf RANK,interact
R5515 T7915 T7964 themeOf RANK,interact
R5516 T7915 T7964 themeOf RANK,interact
R5517 T7915 T7964 themeOf RANK,interact
R5518 T7915 T7964 themeOf RANK,interact
R5519 T7916 T7964 themeOf TRAF1,interact
R5520 T7916 T7964 themeOf TRAF1,interact
R5521 T7917 T7964 themeOf TRAF2,interact
R5523 T7917 T7964 themeOf TRAF2,interact
R5524 T7918 T7964 themeOf TRAF3,interact
R5525 T7918 T7964 themeOf TRAF3,interact
R5526 T7919 T7964 themeOf TRAF5,interact
R5528 T7919 T7964 themeOf TRAF5,interact
R5529 T7920 T7964 themeOf TRAF6,interact
R5531 T7920 T7964 themeOf TRAF6,interact
R5533 T7921 T7963 themeOf TRAF2,proteolysis
R5534 T7922 T7963 themeOf TRAF3,proteolysis

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7080 44-52 Binding denotes interact
T7045 181-186 Protein denotes TRAF3
T7044 171-176 Protein denotes TRAF2
T7043 122-127 Protein denotes TRAF6
T7042 111-116 Protein denotes TRAF5
T7041 104-109 Protein denotes TRAF3
T7040 97-102 Protein denotes TRAF2
T7039 90-95 Protein denotes TRAF1
T7038 39-43 Protein denotes RANK
T7037 30-34 Protein denotes CD40
R4970 T7037 T7080 themeOf CD40,interact
R4971 T7038 T7080 themeOf RANK,interact

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8205 5-28 Binding denotes binding of their ligand
T8144 66-70 Protein denotes TRAF
T8138 122-127 Protein denotes TRAF6
T8104 171-176 Protein denotes TRAF2
T8100 104-109 Protein denotes TRAF3
T8086 13-28 Entity denotes of their ligand
T8077 30-34 Protein denotes CD40
T8054 39-43 Protein denotes RANK
T8048 97-102 Protein denotes TRAF2
T8021 181-186 Protein denotes TRAF3
T7995 111-116 Protein denotes TRAF5
T7975 90-95 Protein denotes TRAF1

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7567 138-143 Positive_regulation denotes leads
T7566 138-143 Positive_regulation denotes leads
T7565 151-162 Protein_catabolism denotes proteolysis
T7564 151-162 Protein_catabolism denotes proteolysis
T7563 44-52 Binding denotes interact
T7562 44-52 Binding denotes interact
T7561 5-12 Binding denotes binding
T7560 5-12 Binding denotes binding
T7559 5-12 Binding denotes binding
T7558 5-12 Binding denotes binding
T7557 5-12 Binding denotes binding
T7556 5-12 Binding denotes binding
T7555 5-12 Binding denotes binding
T7554 5-12 Binding denotes binding
T7553 5-12 Binding denotes binding
T7552 5-12 Binding denotes binding
T7551 5-12 Binding denotes binding
T7550 181-186 Protein denotes TRAF3
T7549 171-176 Protein denotes TRAF2
T7548 122-127 Protein denotes TRAF6
T7547 111-116 Protein denotes TRAF5
T7546 104-109 Protein denotes TRAF3
T7545 97-102 Protein denotes TRAF2
T7544 90-95 Protein denotes TRAF1
T7543 39-43 Protein denotes RANK
T7542 30-34 Protein denotes CD40
R5231 T7542 T7554 themeOf CD40,binding
R5232 T7542 T7555 themeOf CD40,binding
R5233 T7542 T7556 themeOf CD40,binding
R5234 T7542 T7562 themeOf CD40,interact
R5235 T7542 T7563 themeOf CD40,interact
R5236 T7543 T7557 themeOf RANK,binding
R5237 T7543 T7558 themeOf RANK,binding
R5238 T7543 T7559 themeOf RANK,binding
R5240 T7546 T7551 themeOf TRAF3,binding
R5241 T7546 T7554 themeOf TRAF3,binding
R5242 T7546 T7557 themeOf TRAF3,binding
R5243 T7546 T7560 themeOf TRAF3,binding
R5244 T7547 T7552 themeOf TRAF5,binding
R5245 T7547 T7555 themeOf TRAF5,binding
R5246 T7547 T7558 themeOf TRAF5,binding
R5247 T7547 T7561 themeOf TRAF5,binding
R5248 T7547 T7562 themeOf TRAF5,interact
R5249 T7548 T7553 themeOf TRAF6,binding
R5250 T7548 T7556 themeOf TRAF6,binding
R5251 T7548 T7559 themeOf TRAF6,binding
R5252 T7548 T7560 themeOf TRAF6,binding
R5253 T7548 T7561 themeOf TRAF6,binding
R5254 T7548 T7563 themeOf TRAF6,interact
R5255 T7549 T7564 themeOf TRAF2,proteolysis
R5256 T7550 T7565 themeOf TRAF3,proteolysis
R5257 T7564 T7566 themeOf proteolysis,leads
R5258 T7565 T7567 themeOf proteolysis,leads

test3

Id Subject Object Predicate Lexical cue
T4224 181-186 Protein denotes TRAF3
T4223 171-176 Protein denotes TRAF2
T4222 122-127 Protein denotes TRAF6
T4221 111-116 Protein denotes TRAF5
T4220 104-109 Protein denotes TRAF3
T4219 97-102 Protein denotes TRAF2
T4218 90-95 Protein denotes TRAF1
T4217 44-52 Binding denotes interact
T4216 39-43 Protein denotes RANK
T4215 30-34 Protein denotes CD40
T4214 5-12 Binding denotes binding
T4087 181-186 Protein denotes TRAF3
T4086 171-176 Protein denotes TRAF2
T4085 122-127 Protein denotes TRAF6
T4084 111-116 Protein denotes TRAF5
T4083 104-109 Protein denotes TRAF3
T4082 97-102 Protein denotes TRAF2
T4081 90-95 Protein denotes TRAF1
T4080 39-43 Protein denotes RANK
T4079 30-34 Protein denotes CD40
R2899 T4215 T4214 themeOf CD40,binding
R2900 T4215 T4217 themeOf CD40,interact
R2901 T4218 T4214 themeOf TRAF1,binding
R2902 T4218 T4217 themeOf TRAF1,interact
R2903 T4219 T4217 themeOf TRAF2,interact
R2904 T4219 T4214 themeOf TRAF2,binding
R2905 T4220 T4217 themeOf TRAF3,interact
R2906 T4220 T4214 themeOf TRAF3,binding
R2907 T4221 T4214 themeOf TRAF5,binding
R2908 T4221 T4217 themeOf TRAF5,interact
R2909 T4222 T4214 themeOf TRAF6,binding
R2910 T4222 T4217 themeOf TRAF6,interact