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PMC:3218875 / 14478-14578 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T21320 67-76 Positive_regulation denotes increased
T21304 77-80 Protein denotes NIK
T21303 35-38 Protein denotes NIK
T21302 13-18 Protein denotes TRAF3
R13910 T21304 T21320 themeOf NIK,increased

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21972 99-100 . denotes .
T21971 95-99 NN denotes cell
T21970 91-94 DT denotes the
T21969 88-90 IN denotes in
T21968 81-87 NNS denotes levels
T21967 77-80 NNP denotes NIK
T21966 67-76 VBN denotes increased
T21965 64-66 IN denotes in
T21964 54-63 VBG denotes resulting
T21963 52-53 , denotes ,
T21962 42-52 VBN denotes stabilised
T21961 39-41 VBZ denotes is
T21960 35-38 NNP denotes NIK
T21959 31-34 CC denotes and
T21958 22-30 JJ denotes degraded
T21957 19-21 VBZ denotes is
T21956 13-18 CD denotes TRAF3
T21955 11-12 , denotes ,
T21954 5-11 NN denotes result
T21953 3-4 DT denotes a
T21952 0-2 IN denotes As
R14324 T21952 T21957 prep As,is
R14325 T21953 T21954 det a,result
R14326 T21954 T21952 pobj result,As
R14327 T21955 T21957 punct ",",is
R14328 T21956 T21957 nsubj TRAF3,is
R14329 T21957 T21957 ROOT is,is
R14330 T21958 T21957 acomp degraded,is
R14331 T21959 T21957 cc and,is
R14332 T21960 T21961 nsubj NIK,is
R14333 T21961 T21957 conj is,is
R14334 T21962 T21961 acomp stabilised,is
R14335 T21963 T21961 punct ",",is
R14336 T21964 T21961 advcl resulting,is
R14337 T21965 T21964 prep in,resulting
R14338 T21966 T21968 amod increased,levels
R14339 T21967 T21968 compound NIK,levels
R14340 T21968 T21965 pobj levels,in
R14341 T21969 T21968 prep in,levels
R14342 T21970 T21971 det the,cell
R14343 T21971 T21969 pobj cell,in
R14344 T21972 T21961 punct .,is

DLUT931

Id Subject Object Predicate Lexical cue
T22204 67-76 Positive_regulation denotes increased
T22203 54-63 Positive_regulation denotes resulting
T22202 42-52 Positive_regulation denotes stabilised
T22201 22-30 Protein_catabolism denotes degraded
T22177 77-80 Protein denotes NIK
T22176 35-38 Protein denotes NIK
T22175 13-18 Protein denotes TRAF3
R14486 T22175 T22201 themeOf TRAF3,degraded
R14487 T22176 T22202 themeOf NIK,stabilised
R14488 T22177 T22203 themeOf NIK,resulting
R14489 T22177 T22204 themeOf NIK,increased
R14512 T22204 T22203 themeOf increased,resulting

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22089 13-18 http://www.uniprot.org/uniprot/Q13114 denotes TRAF3
T22081 77-80 http://www.uniprot.org/uniprot/Q99558 denotes NIK
T22080 35-38 http://www.uniprot.org/uniprot/Q99558 denotes NIK

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T21519 77-80 Protein denotes NIK
T21518 35-38 Protein denotes NIK
T21517 13-18 Protein denotes TRAF3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T21644 95-99 NN denotes cell
T21643 91-94 DT denotes the
T21642 88-90 IN denotes in
T21641 81-87 NN denotes levels
T21640 77-80 NN denotes NIK
T21639 67-76 VB denotes increased
T21638 64-66 IN denotes in
T21637 54-63 VB denotes resulting
T21636 52-53 -COMMA- denotes ,
T21635 42-52 VB denotes stabilised
T21634 39-41 VB denotes is
T21633 35-38 NN denotes NIK
T21632 31-34 CC denotes and
T21631 22-30 VB denotes degraded
T21630 19-21 VB denotes is
T21629 13-18 NN denotes TRAF3
T21628 11-12 -COMMA- denotes ,
T21627 5-11 NN denotes result
T21626 3-4 DT denotes a
T21625 0-2 IN denotes As
R14102 T21627 T21625 arg2Of result,As
R14103 T21627 T21626 arg1Of result,a
R14104 T21629 T21630 arg1Of TRAF3,is
R14105 T21629 T21631 arg2Of TRAF3,degraded
R14106 T21631 T21630 arg2Of degraded,is
R14107 T21631 T21632 arg1Of degraded,and
R14108 T21632 T21625 arg1Of and,As
R14109 T21632 T21628 arg1Of and,","
R14110 T21632 T21636 arg1Of and,","
R14111 T21632 T21637 modOf and,resulting
R14112 T21633 T21634 arg1Of NIK,is
R14113 T21633 T21635 arg2Of NIK,stabilised
R14114 T21635 T21632 arg2Of stabilised,and
R14115 T21635 T21634 arg2Of stabilised,is
R14116 T21637 T21638 arg1Of resulting,in
R14117 T21641 T21638 arg2Of levels,in
R14118 T21641 T21639 arg2Of levels,increased
R14119 T21641 T21640 arg1Of levels,NIK
R14120 T21641 T21642 arg1Of levels,in
R14121 T21644 T21642 arg2Of cell,in
R14122 T21644 T21643 arg1Of cell,the

GO-BP

Id Subject Object Predicate Lexical cue
T21749 77-80 http://purl.obolibrary.org/obo/GO_0004704 denotes NIK
T21748 35-38 http://purl.obolibrary.org/obo/GO_0004704 denotes NIK

GO-MF

Id Subject Object Predicate Lexical cue
T21770 77-80 http://purl.obolibrary.org/obo/GO_0004704 denotes NIK
T21769 35-38 http://purl.obolibrary.org/obo/GO_0004704 denotes NIK

GO-CC

Id Subject Object Predicate Lexical cue
T21777 95-99 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T21406 0-100 Sentence denotes As a result, TRAF3 is degraded and NIK is stabilised, resulting in increased NIK levels in the cell.
T79 0-100 Sentence denotes As a result, TRAF3 is degraded and NIK is stabilised, resulting in increased NIK levels in the cell.

simple1

Id Subject Object Predicate Lexical cue
T21841 77-80 Protein denotes NIK
T21840 35-38 Protein denotes NIK
T21839 13-18 Protein denotes TRAF3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22413 54-63 Positive_regulation denotes resulting
T22412 5-11 Positive_regulation denotes result
T22411 22-30 Protein_catabolism denotes degraded
T22410 67-76 Positive_regulation denotes increased
T22409 42-52 Positive_regulation denotes stabilised
T22388 77-80 Protein denotes NIK
T22387 35-38 Protein denotes NIK
T22386 13-18 Protein denotes TRAF3
R14580 T22386 T22411 themeOf TRAF3,degraded
R14581 T22387 T22409 themeOf NIK,stabilised
R14582 T22388 T22413 themeOf NIK,resulting
R14583 T22388 T22410 themeOf NIK,increased
R14593 T22411 T22412 themeOf degraded,result

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T22150 67-76 Positive_regulation denotes increased
T22149 22-30 Protein_catabolism denotes degraded
T22128 77-80 Protein denotes NIK
T22127 35-38 Protein denotes NIK
T22126 13-18 Protein denotes TRAF3
R14457 T22126 T22149 themeOf TRAF3,degraded
R14458 T22128 T22150 themeOf NIK,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T22486 13-30 Protein_catabolism denotes TRAF3 is degraded
T22475 35-52 Regulation denotes NIK is stabilised
T22466 13-18 Protein denotes TRAF3
T22450 91-99 Entity denotes the cell
T22437 77-80 Protein denotes NIK
T22429 35-38 Protein denotes NIK
R14597 T22429 T22475 themeOf NIK,NIK is stabilised
R14606 T22466 T22486 themeOf TRAF3,TRAF3 is degraded

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T22277 77-80 Protein denotes NIK
T22276 35-38 Protein denotes NIK
T22275 13-18 Protein denotes TRAF3
T22279 67-76 Positive_regulation denotes increased
T22278 22-30 Protein_catabolism denotes degraded
R14530 T22275 T22278 themeOf TRAF3,degraded
R14531 T22277 T22279 themeOf NIK,increased

test3

Id Subject Object Predicate Lexical cue
T21384 77-80 Protein denotes NIK
T21383 35-38 Protein denotes NIK
T21382 22-30 Protein_catabolism denotes degraded
T21381 13-18 Protein denotes TRAF3
T21346 77-80 Protein denotes NIK
T21345 35-38 Protein denotes NIK
T21344 13-18 Protein denotes TRAF3
R13922 T21381 T21382 themeOf TRAF3,degraded