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PMC:3218875 / 1420-2115 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T279 416-426 Gene_expression denotes expression
T278 403-411 Regulation denotes regulate
T271 615-618 Protein denotes TNF
T270 512-543 Protein denotes inducible nitric oxide synthase
T269 481-498 Protein denotes cyclo-oxygenase-2
T268 475-479 Protein denotes IL-6
T267 464-467 Protein denotes TNF
T266 338-343 Protein denotes c-Rel
T265 332-336 Protein denotes RelB
T264 326-330 Protein denotes RelA
T263 319-322 Protein denotes p65
T262 311-317 Protein denotes NF-κB1
T261 303-307 Protein denotes p105
T260 295-301 Protein denotes NF-κB2
T259 287-291 Protein denotes p100
R206 T261 T278 causeOf p105,regulate
R207 T264 T278 causeOf RelA,regulate
R208 T265 T278 causeOf RelB,regulate
R209 T266 T278 causeOf c-Rel,regulate
R210 T267 T279 themeOf TNF,expression
R211 T268 T279 themeOf IL-6,expression
R212 T269 T279 themeOf cyclo-oxygenase-2,expression
R213 T270 T279 themeOf inducible nitric oxide synthase,expression
R219 T279 T278 themeOf expression,regulate

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1080 694-695 . denotes .
T1079 693-694 -RRB- denotes )
T1078 692-693 NNP denotes ]
T1077 689-692 CD denotes 2,3
T1076 688-689 NNP denotes [
T1075 685-687 IN denotes in
T1074 676-684 VBN denotes reviewed
T1073 675-676 -LRB- denotes (
T1072 669-674 NNP denotes NF-κB
T1071 666-668 IN denotes of
T1070 655-665 NNS denotes activators
T1069 648-654 JJ denotes potent
T1068 643-647 RB denotes very
T1067 632-642 PRP denotes themselves
T1066 628-631 VBP denotes are
T1065 623-627 NNP denotes IL-1
T1064 619-622 CC denotes and
T1063 615-618 NNP denotes TNF
T1062 613-614 , denotes ,
T1061 605-613 NN denotes addition
T1060 602-604 IN denotes In
T1059 600-601 . denotes .
T1058 598-600 NNP denotes RA
T1057 595-597 IN denotes in
T1056 586-594 VBN denotes involved
T1055 582-585 VBP denotes are
T1054 577-581 WDT denotes that
T1053 575-576 : denotes -
T1052 556-574 NNS denotes metalloproteinases
T1051 549-555 NN denotes matrix
T1050 545-548 CC denotes and
T1049 543-544 , denotes ,
T1048 535-543 NN denotes synthase
T1047 529-534 NN denotes oxide
T1046 522-528 JJ denotes nitric
T1045 512-521 JJ denotes inducible
T1044 510-511 , denotes ,
T1043 500-510 NNS denotes chemokines
T1042 498-499 , denotes ,
T1041 481-498 JJ denotes cyclo-oxygenase-2
T1040 479-480 , denotes ,
T1039 475-479 NNP denotes IL-6
T1038 473-474 , denotes ,
T1037 469-473 NNP denotes IL-1
T1036 467-468 , denotes ,
T1035 464-467 NNP denotes TNF
T1034 461-463 IN denotes as
T1033 456-460 JJ denotes such
T1032 454-455 : denotes -
T1031 448-453 NNS denotes genes
T1030 445-447 IN denotes of
T1029 438-444 NN denotes number
T1028 432-437 JJ denotes large
T1027 430-431 DT denotes a
T1026 427-429 IN denotes of
T1025 416-426 NN denotes expression
T1024 412-415 DT denotes the
T1023 403-411 VB denotes regulate
T1022 398-402 IN denotes that
T1021 394-397 CC denotes and
T1020 392-393 , denotes ,
T1019 391-392 NNP denotes ]
T1018 390-391 CD denotes 1
T1017 389-390 VBP denotes [
T1016 376-388 NNS denotes heterodimers
T1015 373-375 CC denotes or
T1014 362-372 NNS denotes homodimers
T1013 359-361 IN denotes as
T1012 350-358 VBP denotes function
T1011 345-349 WDT denotes that
T1010 343-344 -RRB- denotes )
T1009 338-343 NNP denotes c-Rel
T1008 336-337 , denotes ,
T1007 332-336 NNP denotes RelB
T1006 330-331 , denotes ,
T1005 326-330 NNP denotes RelA
T1004 323-325 CC denotes or
T1003 319-322 CD denotes p65
T1002 317-318 , denotes ,
T1001 311-317 NNP denotes NF-κB1
T1000 308-310 CC denotes or
T999 303-307 CD denotes p105
T998 301-302 , denotes ,
T997 295-301 NNP denotes NF-κB2
T996 292-294 CC denotes or
T995 287-291 CD denotes p100
T994 286-287 -LRB- denotes (
T993 277-285 NNS denotes proteins
T992 267-276 VBD denotes conserved
T991 252-266 RB denotes evolutionarily
T990 248-251 CC denotes and
T989 240-247 VBN denotes related
T988 227-239 RB denotes structurally
T987 224-226 IN denotes of
T986 217-223 NN denotes family
T985 215-216 DT denotes a
T984 204-214 VBZ denotes represents
T983 198-203 NN denotes NF-κB
T982 196-197 . denotes .
T981 188-196 NNS denotes diseases
T980 177-187 JJ denotes autoimmune
T979 171-176 JJ denotes other
T978 166-170 JJ denotes many
T977 162-165 CC denotes and
T976 159-161 NNP denotes RA
T975 156-158 IN denotes of
T974 144-155 NN denotes development
T973 140-143 DT denotes the
T972 137-139 IN denotes in
T971 132-136 NN denotes role
T970 128-131 JJ denotes key
T969 126-127 DT denotes a
T968 120-125 VBZ denotes plays
T967 109-119 NN denotes expression
T966 104-108 NN denotes gene
T965 88-103 JJ denotes NF-κB-dependent
T964 85-87 IN denotes of
T963 74-84 NN denotes activation
T962 69-73 IN denotes that
T961 60-68 VBN denotes accepted
T960 55-59 RB denotes well
T959 52-54 VBZ denotes is
T958 49-51 PRP denotes it
T957 45-48 CC denotes but
T956 43-44 , denotes ,
T955 33-43 VBN denotes understood
T954 29-32 RB denotes not
T953 23-28 RB denotes still
T952 20-22 VBZ denotes is
T951 17-19 NNP denotes RA
T950 14-16 IN denotes of
T949 4-13 NN denotes aetiology
T948 0-3 DT denotes The
R758 T948 T949 det The,aetiology
R759 T949 T952 nsubj aetiology,is
R760 T950 T949 prep of,aetiology
R761 T951 T950 pobj RA,of
R762 T952 T955 auxpass is,understood
R763 T953 T955 advmod still,understood
R764 T954 T955 neg not,understood
R765 T955 T955 ROOT understood,understood
R766 T956 T955 punct ",",understood
R767 T957 T955 cc but,understood
R768 T958 T961 nsubjpass it,accepted
R769 T959 T961 auxpass is,accepted
R770 T960 T961 advmod well,accepted
R771 T961 T955 conj accepted,understood
R772 T962 T968 mark that,plays
R773 T963 T968 nsubj activation,plays
R774 T964 T963 prep of,activation
R775 T965 T967 amod NF-κB-dependent,expression
R776 T966 T967 compound gene,expression
R777 T967 T964 pobj expression,of
R778 T968 T961 ccomp plays,accepted
R779 T969 T971 det a,role
R780 T970 T971 amod key,role
R781 T971 T968 dobj role,plays
R782 T972 T971 prep in,role
R783 T973 T974 det the,development
R784 T974 T972 pobj development,in
R785 T975 T974 prep of,development
R786 T976 T975 pobj RA,of
R787 T977 T974 cc and,development
R788 T978 T981 amod many,diseases
R789 T979 T981 amod other,diseases
R790 T980 T981 amod autoimmune,diseases
R791 T981 T974 conj diseases,development
R792 T982 T961 punct .,accepted
R793 T983 T984 nsubj NF-κB,represents
R794 T984 T984 ROOT represents,represents
R795 T985 T986 det a,family
R796 T986 T984 dobj family,represents
R797 T987 T986 prep of,family
R798 T988 T989 advmod structurally,related
R799 T989 T987 pcomp related,of
R800 T990 T984 cc and,represents
R801 T991 T992 advmod evolutionarily,conserved
R802 T992 T993 amod conserved,proteins
R803 T993 T984 conj proteins,represents
R804 T994 T993 punct (,proteins
R805 T995 T1010 nmod p100,)
R806 T996 T995 cc or,p100
R807 T997 T995 conj NF-κB2,p100
R808 T998 T997 punct ",",NF-κB2
R809 T999 T997 conj p105,NF-κB2
R810 T1000 T999 cc or,p105
R811 T1001 T999 conj NF-κB1,p105
R812 T1002 T1001 punct ",",NF-κB1
R813 T1003 T1001 conj p65,NF-κB1
R814 T1004 T1003 cc or,p65
R815 T1005 T1003 conj RelA,p65
R816 T1006 T1005 punct ",",RelA
R817 T1007 T1005 conj RelB,RelA
R818 T1008 T1007 punct ",",RelB
R819 T1009 T1007 conj c-Rel,RelB
R820 T1010 T993 punct ),proteins
R821 T1011 T1012 nsubj that,function
R822 T1012 T993 relcl function,proteins
R823 T1013 T1012 prep as,function
R824 T1014 T1013 pobj homodimers,as
R825 T1015 T1014 cc or,homodimers
R826 T1016 T1014 conj heterodimers,homodimers
R827 T1017 T1019 nmod [,]
R828 T1018 T1019 nummod 1,]
R829 T1019 T993 conj ],proteins
R830 T1020 T1019 punct ",",]
R831 T1021 T984 cc and,represents
R832 T1022 T1023 mark that,regulate
R833 T1023 T984 conj regulate,represents
R834 T1024 T1025 det the,expression
R835 T1025 T1023 dobj expression,regulate
R836 T1026 T1025 prep of,expression
R837 T1027 T1029 det a,number
R838 T1028 T1029 amod large,number
R839 T1029 T1026 pobj number,of
R840 T1030 T1029 prep of,number
R841 T1031 T1030 pobj genes,of
R842 T1032 T1031 punct -,genes
R843 T1033 T1034 amod such,as
R844 T1034 T1031 prep as,genes
R845 T1035 T1034 pobj TNF,as
R846 T1036 T1035 punct ",",TNF
R847 T1037 T1035 conj IL-1,TNF
R848 T1038 T1037 punct ",",IL-1
R849 T1039 T1037 conj IL-6,IL-1
R850 T1040 T1039 punct ",",IL-6
R851 T1041 T1039 conj cyclo-oxygenase-2,IL-6
R852 T1042 T1041 punct ",",cyclo-oxygenase-2
R853 T1043 T1041 conj chemokines,cyclo-oxygenase-2
R854 T1044 T1043 punct ",",chemokines
R855 T1045 T1048 amod inducible,synthase
R856 T1046 T1047 amod nitric,oxide
R857 T1047 T1048 compound oxide,synthase
R858 T1048 T1043 conj synthase,chemokines
R859 T1049 T1048 punct ",",synthase
R860 T1050 T1048 cc and,synthase
R861 T1051 T1052 compound matrix,metalloproteinases
R862 T1052 T1048 conj metalloproteinases,synthase
R863 T1053 T1056 punct -,involved
R864 T1054 T1056 nsubjpass that,involved
R865 T1055 T1056 auxpass are,involved
R866 T1056 T1025 relcl involved,expression
R867 T1057 T1056 prep in,involved
R868 T1058 T1057 pobj RA,in
R869 T1059 T984 punct .,represents
R870 T1060 T1066 prep In,are
R871 T1061 T1060 pobj addition,In
R872 T1062 T1066 punct ",",are
R873 T1063 T1066 nsubj TNF,are
R874 T1064 T1063 cc and,TNF
R875 T1065 T1063 conj IL-1,TNF
R876 T1066 T1066 ROOT are,are
R877 T1067 T1066 nsubj themselves,are
R878 T1068 T1069 advmod very,potent
R879 T1069 T1070 amod potent,activators
R880 T1070 T1066 attr activators,are
R881 T1071 T1070 prep of,activators
R882 T1072 T1071 pobj NF-κB,of
R883 T1073 T1072 punct (,NF-κB
R884 T1074 T1072 acl reviewed,NF-κB
R885 T1075 T1074 prep in,reviewed
R886 T1076 T1075 pobj [,in
R887 T1077 T1078 nummod "2,3",]
R888 T1078 T1076 appos ],[
R889 T1079 T1076 punct ),[
R890 T1080 T1066 punct .,are

DLUT931

Id Subject Object Predicate Lexical cue
T1402 403-411 Regulation denotes regulate
T1401 416-426 Gene_expression denotes expression
T1394 615-618 Protein denotes TNF
T1393 464-467 Protein denotes TNF
T1392 338-343 Protein denotes c-Rel
T1391 332-336 Protein denotes RelB
T1390 326-330 Protein denotes RelA
T1389 319-322 Protein denotes p65
T1388 311-317 Protein denotes NF-κB1
T1387 303-307 Protein denotes p105
T1386 295-301 Protein denotes NF-κB2
T1385 512-543 Protein denotes inducible nitric oxide synthase
T1384 481-498 Protein denotes cyclo-oxygenase-2
T1383 475-479 Protein denotes IL-6
T1382 287-291 Protein denotes p100
R1113 T1382 T1402 causeOf p100,regulate
R1114 T1382 T1402 causeOf p100,regulate
R1115 T1382 T1402 causeOf p100,regulate
R1116 T1382 T1402 causeOf p100,regulate
R1117 T1383 T1401 themeOf IL-6,expression
R1118 T1384 T1401 themeOf cyclo-oxygenase-2,expression
R1119 T1385 T1401 themeOf inducible nitric oxide synthase,expression
R1120 T1393 T1401 themeOf TNF,expression
R1122 T1401 T1402 themeOf expression,regulate
R1123 T1401 T1402 themeOf expression,regulate
R1124 T1401 T1402 themeOf expression,regulate
R1125 T1401 T1402 themeOf expression,regulate

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1276 475-479 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T1275 615-618 http://www.uniprot.org/uniprot/P01375 denotes TNF
T1274 464-467 http://www.uniprot.org/uniprot/P01375 denotes TNF
T1272 338-343 http://www.uniprot.org/uniprot/Q04864 denotes c-Rel
T1271 332-336 http://www.uniprot.org/uniprot/Q01201 denotes RelB
T1270 319-322 http://www.uniprot.org/uniprot/P21579 denotes p65
T1269 319-322 http://www.uniprot.org/uniprot/Q04206 denotes p65
T1268 303-307 http://www.uniprot.org/uniprot/P19838 denotes p105
T1267 303-307 http://www.uniprot.org/uniprot/Q14511 denotes p105
T1266 287-291 http://www.uniprot.org/uniprot/Q00653 denotes p100

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T367 615-618 Protein denotes TNF
T366 512-543 Protein denotes inducible nitric oxide synthase
T365 481-498 Protein denotes cyclo-oxygenase-2
T364 475-479 Protein denotes IL-6
T363 464-467 Protein denotes TNF
T362 338-343 Protein denotes c-Rel
T361 332-336 Protein denotes RelB
T360 326-330 Protein denotes RelA
T359 319-322 Protein denotes p65
T358 311-317 Protein denotes NF-κB1
T357 303-307 Protein denotes p105
T356 295-301 Protein denotes NF-κB2
T355 287-291 Protein denotes p100

2_test

Id Subject Object Predicate Lexical cue
21639951-18267068-4289426 390-391 18267068 denotes 1
21639951-18982160-4289427 691-692 18982160 denotes 3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T615 693-694 -RRB- denotes )
T614 692-693 -RRB- denotes ]
T613 689-692 CD denotes 2,3
T612 688-689 -LRB- denotes [
T611 685-687 IN denotes in
T610 676-684 VB denotes reviewed
T609 675-676 -LRB- denotes (
T608 669-674 NN denotes NF-κB
T607 666-668 IN denotes of
T606 655-665 NN denotes activators
T605 648-654 JJ denotes potent
T604 643-647 RB denotes very
T603 632-642 PRP denotes themselves
T602 628-631 VB denotes are
T601 623-627 NN denotes IL-1
T600 619-622 CC denotes and
T599 615-618 NN denotes TNF
T598 613-614 -COMMA- denotes ,
T597 605-613 NN denotes addition
T596 602-604 IN denotes In
T595 598-600 NN denotes RA
T594 595-597 IN denotes in
T593 586-594 VB denotes involved
T592 582-585 VB denotes are
T591 577-581 WDT denotes that
T590 575-576 -COLON- denotes -
T589 556-574 NN denotes metalloproteinases
T588 549-555 NN denotes matrix
T587 545-548 CC denotes and
T586 543-544 -COMMA- denotes ,
T585 535-543 NN denotes synthase
T584 529-534 NN denotes oxide
T583 522-528 JJ denotes nitric
T582 512-521 JJ denotes inducible
T581 510-511 -COMMA- denotes ,
T580 500-510 NN denotes chemokines
T579 498-499 -COMMA- denotes ,
T578 481-498 NN denotes cyclo-oxygenase-2
T577 479-480 -COMMA- denotes ,
T576 475-479 NN denotes IL-6
T575 473-474 -COMMA- denotes ,
T574 469-473 NN denotes IL-1
T573 467-468 -COMMA- denotes ,
T572 464-467 NN denotes TNF
T571 461-463 IN denotes as
T570 456-460 JJ denotes such
T569 454-455 -COLON- denotes -
T568 448-453 NN denotes genes
T567 445-447 IN denotes of
T566 438-444 NN denotes number
T565 432-437 JJ denotes large
T564 430-431 DT denotes a
T563 427-429 IN denotes of
T562 416-426 NN denotes expression
T561 412-415 DT denotes the
T560 403-411 VB denotes regulate
T559 398-402 WDT denotes that
T558 394-397 CC denotes and
T557 392-393 -COMMA- denotes ,
T556 391-392 -RRB- denotes ]
T555 390-391 CD denotes 1
T554 389-390 -LRB- denotes [
T553 376-388 NN denotes heterodimers
T552 373-375 CC denotes or
T551 362-372 NN denotes homodimers
T550 359-361 IN denotes as
T549 350-358 VB denotes function
T548 345-349 WDT denotes that
T547 343-344 -RRB- denotes )
T546 338-343 NN denotes c-Rel
T545 336-337 -COMMA- denotes ,
T544 332-336 NN denotes RelB
T543 330-331 -COMMA- denotes ,
T542 326-330 NN denotes RelA
T541 323-325 CC denotes or
T540 319-322 NN denotes p65
T539 317-318 -COMMA- denotes ,
T538 311-317 NN denotes NF-κB1
T537 308-310 CC denotes or
T536 303-307 NN denotes p105
T535 301-302 -COMMA- denotes ,
T534 295-301 NN denotes NF-κB2
T533 292-294 CC denotes or
T532 287-291 NN denotes p100
T531 286-287 -LRB- denotes (
T530 277-285 NN denotes proteins
T529 267-276 VB denotes conserved
T528 252-266 RB denotes evolutionarily
T527 248-251 CC denotes and
T526 240-247 VB denotes related
T525 227-239 RB denotes structurally
T524 224-226 IN denotes of
T523 217-223 NN denotes family
T522 215-216 DT denotes a
T521 204-214 VB denotes represents
T520 198-203 NN denotes NF-κB
T519 188-196 NN denotes diseases
T518 177-187 JJ denotes autoimmune
T517 171-176 JJ denotes other
T516 166-170 JJ denotes many
T515 162-165 CC denotes and
T514 159-161 NN denotes RA
T513 156-158 IN denotes of
T512 144-155 NN denotes development
T511 140-143 DT denotes the
T510 137-139 IN denotes in
T509 132-136 NN denotes role
T508 128-131 JJ denotes key
T507 126-127 DT denotes a
T506 120-125 VB denotes plays
T505 109-119 NN denotes expression
T504 104-108 NN denotes gene
T503 88-103 JJ denotes NF-κB-dependent
T502 85-87 IN denotes of
T501 74-84 NN denotes activation
T500 69-73 IN denotes that
T499 60-68 VB denotes accepted
T498 55-59 RB denotes well
T497 52-54 VB denotes is
T496 49-51 PRP denotes it
T495 45-48 CC denotes but
T494 43-44 -COMMA- denotes ,
T493 33-43 VB denotes understood
T492 29-32 RB denotes not
T491 23-28 RB denotes still
T490 20-22 VB denotes is
T489 17-19 NN denotes RA
T488 14-16 IN denotes of
T487 4-13 NN denotes aetiology
T486 0-3 DT denotes The
R349 T487 T486 arg1Of aetiology,The
R350 T487 T488 arg1Of aetiology,of
R351 T487 T490 arg1Of aetiology,is
R352 T487 T493 arg2Of aetiology,understood
R353 T489 T488 arg2Of RA,of
R354 T493 T490 arg2Of understood,is
R355 T493 T491 arg1Of understood,still
R356 T493 T492 arg1Of understood,not
R357 T493 T495 arg1Of understood,but
R358 T495 T494 arg1Of but,","
R359 T496 T497 arg1Of it,is
R360 T496 T499 arg2Of it,accepted
R361 T499 T495 arg2Of accepted,but
R362 T499 T497 arg2Of accepted,is
R363 T499 T498 arg1Of accepted,well
R364 T501 T502 arg1Of activation,of
R365 T501 T506 arg1Of activation,plays
R366 T505 T502 arg2Of expression,of
R367 T505 T503 arg1Of expression,NF-κB-dependent
R368 T505 T504 arg1Of expression,gene
R369 T506 T499 arg3Of plays,accepted
R370 T506 T500 arg1Of plays,that
R371 T506 T510 arg1Of plays,in
R372 T509 T506 arg2Of role,plays
R373 T509 T507 arg1Of role,a
R374 T509 T508 arg1Of role,key
R375 T512 T510 arg2Of development,in
R376 T512 T511 arg1Of development,the
R377 T512 T513 arg1Of development,of
R378 T514 T515 arg1Of RA,and
R379 T515 T513 arg2Of and,of
R380 T519 T515 arg2Of diseases,and
R381 T519 T516 arg1Of diseases,many
R382 T519 T517 arg1Of diseases,other
R383 T519 T518 arg1Of diseases,autoimmune
R384 T520 T521 arg1Of NF-κB,represents
R385 T523 T521 arg2Of family,represents
R386 T523 T522 arg1Of family,a
R387 T523 T524 arg1Of family,of
R388 T523 T569 arg1Of family,-
R389 T523 T571 arg1Of family,as
R390 T526 T525 arg1Of related,structurally
R391 T526 T527 arg1Of related,and
R392 T529 T527 arg2Of conserved,and
R393 T529 T528 arg1Of conserved,evolutionarily
R394 T530 T524 arg2Of proteins,of
R395 T530 T526 arg1Of proteins,related
R396 T530 T529 arg1Of proteins,conserved
R397 T530 T531 arg1Of proteins,(
R398 T530 T548 arg1Of proteins,that
R399 T530 T549 arg1Of proteins,function
R400 T530 T559 arg1Of proteins,that
R401 T530 T560 arg1Of proteins,regulate
R402 T532 T533 arg1Of p100,or
R403 T533 T535 arg1Of or,","
R404 T534 T533 arg2Of NF-κB2,or
R405 T535 T539 arg1Of ",",","
R406 T536 T537 arg1Of p105,or
R407 T537 T535 arg2Of or,","
R408 T538 T537 arg2Of NF-κB1,or
R409 T539 T541 arg1Of ",",or
R410 T540 T539 arg2Of p65,","
R411 T541 T531 arg2Of or,(
R412 T542 T541 arg2Of RelA,or
R413 T542 T543 arg1Of RelA,","
R414 T542 T545 arg1Of RelA,","
R415 T544 T543 arg2Of RelB,","
R416 T546 T545 arg2Of c-Rel,","
R417 T547 T531 arg3Of ),(
R418 T549 T550 arg1Of function,as
R419 T549 T558 arg1Of function,and
R420 T551 T552 arg1Of homodimers,or
R421 T552 T550 arg2Of or,as
R422 T552 T554 arg1Of or,[
R423 T553 T552 arg2Of heterodimers,or
R424 T555 T554 arg2Of 1,[
R425 T556 T554 arg3Of ],[
R426 T558 T557 arg1Of and,","
R427 T560 T558 arg2Of regulate,and
R428 T562 T560 arg2Of expression,regulate
R429 T562 T561 arg1Of expression,the
R430 T562 T563 arg1Of expression,of
R431 T566 T563 arg2Of number,of
R432 T566 T564 arg1Of number,a
R433 T566 T565 arg1Of number,large
R434 T566 T567 arg1Of number,of
R435 T568 T567 arg2Of genes,of
R436 T571 T570 arg1Of as,such
R437 T572 T573 arg1Of TNF,","
R438 T573 T575 arg1Of ",",","
R439 T574 T573 arg2Of IL-1,","
R440 T575 T577 arg1Of ",",","
R441 T576 T575 arg2Of IL-6,","
R442 T577 T579 arg1Of ",",","
R443 T578 T577 arg2Of cyclo-oxygenase-2,","
R444 T579 T581 arg1Of ",",","
R445 T580 T579 arg2Of chemokines,","
R446 T581 T587 arg1Of ",",and
R447 T585 T581 arg2Of synthase,","
R448 T585 T582 arg1Of synthase,inducible
R449 T585 T583 arg1Of synthase,nitric
R450 T585 T584 arg1Of synthase,oxide
R451 T587 T571 arg2Of and,as
R452 T587 T586 arg1Of and,","
R453 T589 T587 arg2Of metalloproteinases,and
R454 T589 T588 arg1Of metalloproteinases,matrix
R455 T589 T590 arg1Of metalloproteinases,-
R456 T589 T591 arg1Of metalloproteinases,that
R457 T589 T592 arg1Of metalloproteinases,are
R458 T589 T593 arg2Of metalloproteinases,involved
R459 T593 T592 arg2Of involved,are
R460 T593 T594 arg1Of involved,in
R461 T595 T594 arg2Of RA,in
R462 T597 T596 arg2Of addition,In
R463 T599 T600 arg1Of TNF,and
R464 T600 T602 arg1Of and,are
R465 T601 T600 arg2Of IL-1,and
R466 T602 T596 arg1Of are,In
R467 T602 T598 arg1Of are,","
R468 T603 T602 arg2Of themselves,are
R469 T603 T606 arg1Of themselves,activators
R470 T605 T604 arg1Of potent,very
R471 T606 T605 arg1Of activators,potent
R472 T606 T607 arg1Of activators,of
R473 T606 T609 arg1Of activators,(
R474 T608 T607 arg2Of NF-κB,of
R475 T610 T609 arg2Of reviewed,(
R476 T610 T611 arg1Of reviewed,in
R477 T610 T612 arg1Of reviewed,[
R478 T613 T612 arg2Of "2,3",[
R479 T614 T612 arg3Of ],[
R480 T615 T609 arg3Of ),(

GO-BP

Id Subject Object Predicate Lexical cue
T794 522-543 http://purl.obolibrary.org/obo/GO_0051001 denotes nitric oxide synthase
T793 522-543 http://purl.obolibrary.org/obo/GO_0050999 denotes nitric oxide synthase
T792 522-543 http://purl.obolibrary.org/obo/GO_0051000 denotes nitric oxide synthase
T791 522-543 http://purl.obolibrary.org/obo/GO_0004517 denotes nitric oxide synthase
T790 487-496 http://purl.obolibrary.org/obo/GO_0016701 denotes oxygenase
T788 144-155 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T786 104-119 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T782 655-674 http://purl.obolibrary.org/obo/GO_0051092 denotes activators of NF-κB
T781 74-93 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB

GO-MF

Id Subject Object Predicate Lexical cue
T809 522-543 http://purl.obolibrary.org/obo/GO_0050998 denotes nitric oxide synthase
T808 522-543 http://purl.obolibrary.org/obo/GO_0004517 denotes nitric oxide synthase
T807 487-496 http://purl.obolibrary.org/obo/GO_0016701 denotes oxygenase
T806 475-479 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T805 623-627 http://purl.obolibrary.org/obo/GO_0005149 denotes IL-1
T804 469-473 http://purl.obolibrary.org/obo/GO_0005149 denotes IL-1

sentences

Id Subject Object Predicate Lexical cue
T330 602-695 Sentence denotes In addition, TNF and IL-1 are themselves very potent activators of NF-κB (reviewed in [2,3]).
T329 198-601 Sentence denotes NF-κB represents a family of structurally related and evolutionarily conserved proteins (p100 or NF-κB2, p105 or NF-κB1, p65 or RelA, RelB, c-Rel) that function as homodimers or heterodimers [1], and that regulate the expression of a large number of genes - such as TNF, IL-1, IL-6, cyclo-oxygenase-2, chemokines, inducible nitric oxide synthase, and matrix metalloproteinases - that are involved in RA.
T328 0-197 Sentence denotes The aetiology of RA is still not understood, but it is well accepted that activation of NF-κB-dependent gene expression plays a key role in the development of RA and many other autoimmune diseases.
T11 0-197 Sentence denotes The aetiology of RA is still not understood, but it is well accepted that activation of NF-κB-dependent gene expression plays a key role in the development of RA and many other autoimmune diseases.
T12 198-601 Sentence denotes NF-κB represents a family of structurally related and evolutionarily conserved proteins (p100 or NF-κB2, p105 or NF-κB1, p65 or RelA, RelB, c-Rel) that function as homodimers or heterodimers [1], and that regulate the expression of a large number of genes - such as TNF, IL-1, IL-6, cyclo-oxygenase-2, chemokines, inducible nitric oxide synthase, and matrix metalloproteinases - that are involved in RA.
T13 602-695 Sentence denotes In addition, TNF and IL-1 are themselves very potent activators of NF-κB (reviewed in [2,3]).

simple1

Id Subject Object Predicate Lexical cue
T825 615-618 Protein denotes TNF
T824 512-543 Protein denotes inducible nitric oxide synthase
T823 481-498 Protein denotes cyclo-oxygenase-2
T822 475-479 Protein denotes IL-6
T821 464-467 Protein denotes TNF
T820 338-343 Protein denotes c-Rel
T819 332-336 Protein denotes RelB
T818 326-330 Protein denotes RelA
T817 319-322 Protein denotes p65
T816 311-317 Protein denotes NF-κB1
T815 303-307 Protein denotes p105
T814 295-301 Protein denotes NF-κB2
T813 287-291 Protein denotes p100

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1526 416-426 Gene_expression denotes expression
T1525 403-411 Regulation denotes regulate
T1518 615-618 Protein denotes TNF
T1517 464-467 Protein denotes TNF
T1516 338-343 Protein denotes c-Rel
T1515 332-336 Protein denotes RelB
T1514 326-330 Protein denotes RelA
T1513 319-322 Protein denotes p65
T1512 311-317 Protein denotes NF-κB1
T1511 303-307 Protein denotes p105
T1510 295-301 Protein denotes NF-κB2
T1509 512-543 Protein denotes inducible nitric oxide synthase
T1508 481-498 Protein denotes cyclo-oxygenase-2
T1507 475-479 Protein denotes IL-6
T1506 287-291 Protein denotes p100
R1206 T1507 T1526 themeOf IL-6,expression
R1254 T1508 T1526 themeOf cyclo-oxygenase-2,expression
R1255 T1509 T1526 themeOf inducible nitric oxide synthase,expression
R1256 T1517 T1526 themeOf TNF,expression
R1259 T1526 T1525 themeOf expression,regulate
R1260 T1526 T1525 themeOf expression,regulate
R1261 T1526 T1525 themeOf expression,regulate
R1262 T1526 T1525 themeOf expression,regulate

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1299 403-411 Regulation denotes regulate
T1298 416-426 Gene_expression denotes expression
T1291 615-618 Protein denotes TNF
T1290 464-467 Protein denotes TNF
T1289 338-343 Protein denotes c-Rel
T1288 332-336 Protein denotes RelB
T1287 326-330 Protein denotes RelA
T1286 319-322 Protein denotes p65
T1285 311-317 Protein denotes NF-κB1
T1284 303-307 Protein denotes p105
T1283 295-301 Protein denotes NF-κB2
T1282 512-543 Protein denotes inducible nitric oxide synthase
T1281 481-498 Protein denotes cyclo-oxygenase-2
T1280 475-479 Protein denotes IL-6
T1279 287-291 Protein denotes p100
R1058 T1281 T1298 themeOf cyclo-oxygenase-2,expression
R1059 T1283 T1299 causeOf NF-κB2,regulate
R1064 T1298 T1299 themeOf expression,regulate

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1587 85-119 Regulation denotes of NF-κB-dependent gene expression
T1585 198-203 Protein denotes NF-κB
T1584 326-337 Protein denotes RelA, RelB,
T1583 326-343 Protein denotes RelA, RelB, c-Rel
T1579 88-103 Protein denotes NF-κB-dependent
T1576 512-544 Protein denotes inducible nitric oxide synthase,
T1571 448-463 Protein denotes genes - such as
T1569 469-473 Protein denotes IL-1
T1568 295-301 Protein denotes NF-κB2
T1567 615-618 Protein denotes TNF
T1564 643-674 Entity denotes very potent activators of NF-κB
T1563 287-291 Protein denotes p100
T1562 332-336 Protein denotes RelB
T1561 595-600 Protein denotes in RA
T1559 311-317 Protein denotes NF-κB1
T1558 623-627 Protein denotes IL-1
T1555 362-372 Entity denotes homodimers
T1553 464-474 Protein denotes TNF, IL-1,
T1548 445-555 Protein denotes of genes - such as TNF, IL-1, IL-6, cyclo-oxygenase-2, chemokines, inducible nitric oxide synthase, and matrix
T1546 159-161 Protein denotes RA
T1542 481-498 Protein denotes cyclo-oxygenase-2
T1541 303-307 Protein denotes p105
T1539 277-344 Protein denotes proteins (p100 or NF-κB2, p105 or NF-κB1, p65 or RelA, RelB, c-Rel)
T1532 14-19 Protein denotes of RA
T1531 376-388 Entity denotes heterodimers
T1530 669-674 Protein denotes NF-κB
T1529 475-499 Protein denotes IL-6, cyclo-oxygenase-2,
T1528 287-322 Protein denotes p100 or NF-κB2, p105 or NF-κB1, p65
R1265 T1579 T1587 causeOf NF-κB-dependent,of NF-κB-dependent gene expression

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1341 403-411 Regulation denotes regulate
T1340 403-411 Regulation denotes regulate
T1313 481-498 Protein denotes cyclo-oxygenase-2
T1312 475-479 Protein denotes IL-6
T1311 469-473 Protein denotes IL-1
T1310 464-467 Protein denotes TNF
T1309 338-343 Protein denotes c-Rel
T1308 332-336 Protein denotes RelB
T1307 326-330 Protein denotes RelA
T1306 319-322 Protein denotes p65
T1305 311-317 Protein denotes NF-κB1
T1304 303-307 Protein denotes p105
T1303 295-301 Protein denotes NF-κB2
T1302 287-291 Protein denotes p100
T1301 198-203 Protein denotes NF-κB
T1300 88-93 Protein denotes NF-κB
T1339 403-411 Regulation denotes regulate
T1338 403-411 Regulation denotes regulate
T1337 403-411 Regulation denotes regulate
T1336 403-411 Regulation denotes regulate
T1335 403-411 Regulation denotes regulate
T1334 403-411 Regulation denotes regulate
T1333 403-411 Regulation denotes regulate
T1332 403-411 Regulation denotes regulate
T1331 403-411 Regulation denotes regulate
T1330 403-411 Regulation denotes regulate
T1329 403-411 Regulation denotes regulate
T1328 403-411 Regulation denotes regulate
T1327 403-411 Regulation denotes regulate
T1326 403-411 Regulation denotes regulate
T1325 403-411 Regulation denotes regulate
T1324 403-411 Regulation denotes regulate
T1323 403-411 Regulation denotes regulate
T1322 512-521 Positive_regulation denotes inducible
T1321 416-426 Gene_expression denotes expression
T1320 416-426 Gene_expression denotes expression
T1319 416-426 Gene_expression denotes expression
T1318 416-426 Gene_expression denotes expression
T1317 416-426 Gene_expression denotes expression
T1316 416-426 Gene_expression denotes expression
T1315 556-574 Protein denotes metalloproteinases
T1314 522-543 Protein denotes nitric oxide synthase
T1349 403-411 Regulation denotes regulate
T1348 403-411 Regulation denotes regulate
T1347 403-411 Regulation denotes regulate
T1346 403-411 Regulation denotes regulate
T1345 403-411 Regulation denotes regulate
T1344 403-411 Regulation denotes regulate
T1343 403-411 Regulation denotes regulate
T1342 403-411 Regulation denotes regulate
T1363 655-665 Positive_regulation denotes activators
T1362 655-665 Positive_regulation denotes activators
T1361 669-674 Protein denotes NF-κB
T1360 623-627 Protein denotes IL-1
T1359 615-618 Protein denotes TNF
T1358 403-411 Regulation denotes regulate
T1357 403-411 Regulation denotes regulate
T1356 403-411 Regulation denotes regulate
T1355 403-411 Regulation denotes regulate
T1354 403-411 Regulation denotes regulate
T1353 403-411 Regulation denotes regulate
T1352 403-411 Regulation denotes regulate
T1351 403-411 Regulation denotes regulate
T1350 403-411 Regulation denotes regulate
R1057 T1310 T1316 themeOf TNF,expression
R1060 T1311 T1317 themeOf IL-1,expression
R1061 T1312 T1318 themeOf IL-6,expression
R1062 T1313 T1319 themeOf cyclo-oxygenase-2,expression
R1063 T1314 T1320 themeOf nitric oxide synthase,expression
R1065 T1314 T1322 themeOf nitric oxide synthase,inducible
R1066 T1315 T1321 themeOf metalloproteinases,expression
R1067 T1316 T1323 themeOf expression,regulate
R1068 T1316 T1329 themeOf expression,regulate
R1069 T1316 T1335 themeOf expression,regulate
R1070 T1316 T1341 themeOf expression,regulate
R1071 T1316 T1347 themeOf expression,regulate
R1072 T1342 T1304 Cause regulate,p105
R1073 T1316 T1353 themeOf expression,regulate
R1074 T1317 T1324 themeOf expression,regulate
R1075 T1343 T1304 Cause regulate,p105
R1076 T1344 T1304 Cause regulate,p105
R1077 T1345 T1304 Cause regulate,p105
R1078 T1346 T1304 Cause regulate,p105
R1079 T1347 T1305 Cause regulate,NF-κB1
R1080 T1348 T1305 Cause regulate,NF-κB1
R1081 T1349 T1305 Cause regulate,NF-κB1
R1082 T1317 T1330 themeOf expression,regulate
R1083 T1350 T1305 Cause regulate,NF-κB1
R1084 T1351 T1305 Cause regulate,NF-κB1
R1085 T1352 T1305 Cause regulate,NF-κB1
R1086 T1353 T1307 Cause regulate,RelA
R1087 T1354 T1307 Cause regulate,RelA
R1088 T1355 T1307 Cause regulate,RelA
R1089 T1356 T1307 Cause regulate,RelA
R1090 T1357 T1307 Cause regulate,RelA
R1091 T1358 T1307 Cause regulate,RelA
R1092 T1361 T1362 themeOf NF-κB,activators
R1093 T1361 T1363 themeOf NF-κB,activators
R1094 T1362 T1359 Cause activators,TNF
R1095 T1363 T1360 Cause activators,IL-1
R1098 T1317 T1336 themeOf expression,regulate
R1100 T1317 T1342 themeOf expression,regulate
R1101 T1317 T1348 themeOf expression,regulate
R1102 T1317 T1354 themeOf expression,regulate
R1103 T1318 T1325 themeOf expression,regulate
R1107 T1318 T1331 themeOf expression,regulate
R1108 T1318 T1337 themeOf expression,regulate
R1109 T1318 T1343 themeOf expression,regulate
R1110 T1318 T1349 themeOf expression,regulate
R1111 T1318 T1355 themeOf expression,regulate
R1112 T1319 T1326 themeOf expression,regulate
R1127 T1319 T1332 themeOf expression,regulate
R1128 T1319 T1338 themeOf expression,regulate
R1129 T1319 T1344 themeOf expression,regulate
R1130 T1319 T1350 themeOf expression,regulate
R1131 T1319 T1356 themeOf expression,regulate
R1132 T1320 T1327 themeOf expression,regulate
R1133 T1320 T1333 themeOf expression,regulate
R1134 T1320 T1339 themeOf expression,regulate
R1135 T1320 T1345 themeOf expression,regulate
R1136 T1320 T1351 themeOf expression,regulate
R1137 T1320 T1357 themeOf expression,regulate
R1138 T1321 T1328 themeOf expression,regulate
R1139 T1321 T1334 themeOf expression,regulate
R1140 T1321 T1340 themeOf expression,regulate
R1141 T1321 T1346 themeOf expression,regulate
R1142 T1321 T1352 themeOf expression,regulate
R1143 T1321 T1358 themeOf expression,regulate
R1144 T1323 T1301 Cause regulate,NF-κB
R1145 T1324 T1301 Cause regulate,NF-κB
R1146 T1325 T1301 Cause regulate,NF-κB
R1147 T1326 T1301 Cause regulate,NF-κB
R1149 T1327 T1301 Cause regulate,NF-κB
R1150 T1328 T1301 Cause regulate,NF-κB
R1151 T1329 T1302 Cause regulate,p100
R1152 T1330 T1302 Cause regulate,p100
R1153 T1331 T1302 Cause regulate,p100
R1154 T1332 T1302 Cause regulate,p100
R1155 T1333 T1302 Cause regulate,p100
R1156 T1334 T1302 Cause regulate,p100
R1157 T1335 T1303 Cause regulate,NF-κB2
R1158 T1336 T1303 Cause regulate,NF-κB2
R1159 T1337 T1303 Cause regulate,NF-κB2
R1160 T1338 T1303 Cause regulate,NF-κB2
R1162 T1339 T1303 Cause regulate,NF-κB2
R1166 T1340 T1303 Cause regulate,NF-κB2
R1171 T1341 T1304 Cause regulate,p105

test3

Id Subject Object Predicate Lexical cue
T314 615-618 Protein denotes TNF
T313 512-543 Protein denotes inducible nitric oxide synthase
T312 481-498 Protein denotes cyclo-oxygenase-2
T311 475-479 Protein denotes IL-6
T310 464-467 Protein denotes TNF
T309 416-426 Gene_expression denotes expression
T308 403-411 Regulation denotes regulate
T307 338-343 Protein denotes c-Rel
T306 332-336 Protein denotes RelB
T305 326-330 Protein denotes RelA
T304 319-322 Protein denotes p65
T303 311-317 Protein denotes NF-κB1
T302 303-307 Protein denotes p105
T301 295-301 Protein denotes NF-κB2
T300 287-291 Protein denotes p100
T293 615-618 Protein denotes TNF
T292 512-543 Protein denotes inducible nitric oxide synthase
T291 481-498 Protein denotes cyclo-oxygenase-2
T290 475-479 Protein denotes IL-6
T289 464-467 Protein denotes TNF
T288 338-343 Protein denotes c-Rel
T287 332-336 Protein denotes RelB
T286 326-330 Protein denotes RelA
T285 319-322 Protein denotes p65
T284 311-317 Protein denotes NF-κB1
T283 303-307 Protein denotes p105
T282 295-301 Protein denotes NF-κB2
T281 287-291 Protein denotes p100
R220 T302 T308 causeOf p105,regulate
R221 T304 T308 causeOf p65,regulate
R222 T307 T308 causeOf c-Rel,regulate
R223 T309 T308 themeOf expression,regulate
R224 T310 T309 themeOf TNF,expression
R225 T311 T309 themeOf IL-6,expression
R226 T312 T309 themeOf cyclo-oxygenase-2,expression
R227 T313 T309 themeOf inducible nitric oxide synthase,expression