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PMC:3218875 / 14006-14222 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T21318 173-184 Protein_catabolism denotes degradation
T21293 201-204 Protein denotes NIK
T21292 188-191 Protein denotes NIK
T21291 102-103 Protein denotes 2
T21290 96-101 Protein denotes cIAP1
T21289 86-91 Protein denotes TRAF3
T21288 79-84 Protein denotes TRAF2
T21287 22-25 Protein denotes NIK
R13908 T21292 T21318 themeOf NIK,degradation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21902 138-156 NN denotes polyubiquitination
T21901 127-137 JJ denotes K48-linked
T21900 123-126 DT denotes the
T21899 111-122 VBZ denotes facilitates
T21898 105-110 WDT denotes which
T21897 103-104 , denotes ,
T21896 96-103 NNP denotes cIAP1/2
T21895 92-95 CC denotes and
T21894 86-91 CD denotes TRAF3
T21893 84-85 , denotes ,
T21892 79-84 CD denotes TRAF2
T21891 71-78 VBZ denotes ligases
T21890 61-70 NN denotes ubiquitin
T21889 57-60 DT denotes the
T21888 52-56 IN denotes with
T21887 44-51 NN denotes complex
T21886 34-43 JJ denotes cytosolic
T21885 32-33 DT denotes a
T21884 26-31 VBZ denotes forms
T21883 22-25 NNP denotes NIK
T21882 16-21 NNS denotes cells
T21881 3-15 JJ denotes unstimulated
T21880 0-2 IN denotes In
T21913 215-216 . denotes .
T21912 212-215 JJ denotes low
T21911 205-211 NNS denotes levels
T21910 201-204 NNP denotes NIK
T21909 193-200 VBG denotes keeping
T21908 191-192 , denotes ,
T21907 188-191 NNP denotes NIK
T21906 185-187 IN denotes of
T21905 173-184 NN denotes degradation
T21904 161-172 JJ denotes proteasomal
T21903 157-160 CC denotes and
R14252 T21880 T21884 prep In,forms
R14253 T21881 T21882 amod unstimulated,cells
R14254 T21882 T21880 pobj cells,In
R14255 T21883 T21884 nsubj NIK,forms
R14256 T21884 T21884 ROOT forms,forms
R14257 T21885 T21887 det a,complex
R14258 T21886 T21887 amod cytosolic,complex
R14259 T21887 T21884 dobj complex,forms
R14260 T21888 T21887 prep with,complex
R14261 T21889 T21890 det the,ubiquitin
R14262 T21890 T21891 nsubj ubiquitin,ligases
R14263 T21891 T21884 conj ligases,forms
R14264 T21892 T21891 dobj TRAF2,ligases
R14265 T21893 T21892 punct ",",TRAF2
R14266 T21894 T21892 conj TRAF3,TRAF2
R14267 T21895 T21894 cc and,TRAF3
R14268 T21896 T21894 conj cIAP1/2,TRAF3
R14269 T21897 T21896 punct ",",cIAP1/2
R14270 T21898 T21899 nsubj which,facilitates
R14271 T21899 T21896 relcl facilitates,cIAP1/2
R14272 T21900 T21902 det the,polyubiquitination
R14273 T21901 T21902 amod K48-linked,polyubiquitination
R14274 T21902 T21899 dobj polyubiquitination,facilitates
R14275 T21903 T21902 cc and,polyubiquitination
R14276 T21904 T21905 amod proteasomal,degradation
R14277 T21905 T21902 conj degradation,polyubiquitination
R14278 T21906 T21905 prep of,degradation
R14279 T21907 T21906 pobj NIK,of
R14280 T21908 T21891 punct ",",ligases
R14281 T21909 T21891 advcl keeping,ligases
R14282 T21910 T21911 compound NIK,levels
R14283 T21911 T21909 dobj levels,keeping
R14284 T21912 T21909 oprd low,keeping
R14285 T21913 T21891 punct .,ligases

DLUT931

Id Subject Object Predicate Lexical cue
T22195 111-122 Positive_regulation denotes facilitates
T22194 212-215 Positive_regulation denotes low
T22193 173-184 Protein_catabolism denotes degradation
T22192 138-156 Binding denotes polyubiquitination
T22166 102-103 Protein denotes 2
T22165 96-101 Protein denotes cIAP1
T22164 86-91 Protein denotes TRAF3
T22163 79-84 Protein denotes TRAF2
T22162 22-25 Protein denotes NIK
T22161 201-204 Protein denotes NIK
T22160 188-191 Protein denotes NIK
R14472 T22160 T22192 themeOf NIK,polyubiquitination
R14473 T22160 T22193 themeOf NIK,degradation
R14474 T22161 T22194 themeOf NIK,low
R14504 T22192 T22195 themeOf polyubiquitination,facilitates
R14505 T22193 T22195 themeOf degradation,facilitates

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22092 96-101 http://www.uniprot.org/uniprot/Q13490 denotes cIAP1
T22086 86-91 http://www.uniprot.org/uniprot/Q13114 denotes TRAF3
T22083 79-84 http://www.uniprot.org/uniprot/Q12933 denotes TRAF2
T22078 201-204 http://www.uniprot.org/uniprot/Q99558 denotes NIK
T22077 188-191 http://www.uniprot.org/uniprot/Q99558 denotes NIK
T22076 22-25 http://www.uniprot.org/uniprot/Q99558 denotes NIK

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T21508 201-204 Protein denotes NIK
T21507 188-191 Protein denotes NIK
T21506 102-103 Protein denotes 2
T21505 96-101 Protein denotes cIAP1
T21504 86-91 Protein denotes TRAF3
T21503 79-84 Protein denotes TRAF2
T21502 22-25 Protein denotes NIK

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T21490 86-91 Antecedent denotes TRAF3
T21489 79-84 Antecedent denotes TRAF2
T21488 105-110 Anaphor denotes which
R14003 T21488 T21489 boundBy which,TRAF2
R14004 T21488 T21490 boundBy which,TRAF3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T21588 212-215 JJ denotes low
T21587 205-211 NN denotes levels
T21586 201-204 NN denotes NIK
T21585 193-200 VB denotes keeping
T21584 191-192 -COMMA- denotes ,
T21583 188-191 NN denotes NIK
T21582 185-187 IN denotes of
T21581 173-184 NN denotes degradation
T21580 161-172 JJ denotes proteasomal
T21579 157-160 CC denotes and
T21578 138-156 NN denotes polyubiquitination
T21577 127-137 JJ denotes K48-linked
T21576 123-126 DT denotes the
T21575 111-122 VB denotes facilitates
T21574 105-110 WDT denotes which
T21573 103-104 -COMMA- denotes ,
T21572 96-103 NN denotes cIAP1/2
T21571 92-95 CC denotes and
T21570 86-91 NN denotes TRAF3
T21569 84-85 -COMMA- denotes ,
T21568 79-84 NN denotes TRAF2
T21567 71-78 NN denotes ligases
T21566 61-70 NN denotes ubiquitin
T21565 57-60 DT denotes the
T21564 52-56 IN denotes with
T21563 44-51 NN denotes complex
T21562 34-43 JJ denotes cytosolic
T21561 32-33 DT denotes a
T21560 26-31 VB denotes forms
T21559 22-25 NN denotes NIK
T21558 16-21 NN denotes cells
T21557 3-15 JJ denotes unstimulated
T21556 0-2 IN denotes In
R14033 T21558 T21556 arg2Of cells,In
R14034 T21558 T21557 arg1Of cells,unstimulated
R14035 T21559 T21560 arg1Of NIK,forms
R14036 T21560 T21556 arg1Of forms,In
R14037 T21560 T21584 arg1Of forms,","
R14038 T21563 T21560 arg2Of complex,forms
R14039 T21563 T21561 arg1Of complex,a
R14040 T21563 T21562 arg1Of complex,cytosolic
R14041 T21563 T21564 arg1Of complex,with
R14042 T21567 T21565 arg1Of ligases,the
R14043 T21567 T21566 arg1Of ligases,ubiquitin
R14044 T21568 T21569 arg1Of TRAF2,","
R14045 T21569 T21571 arg1Of ",",and
R14046 T21570 T21569 arg2Of TRAF3,","
R14047 T21571 T21564 arg2Of and,with
R14048 T21571 T21567 arg1Of and,ligases
R14049 T21571 T21573 arg1Of and,","
R14050 T21571 T21574 arg1Of and,which
R14051 T21571 T21575 arg1Of and,facilitates
R14052 T21572 T21571 arg2Of cIAP1/2,and
R14053 T21577 T21578 arg1Of K48-linked,polyubiquitination
R14054 T21577 T21579 arg1Of K48-linked,and
R14055 T21580 T21579 arg2Of proteasomal,and
R14056 T21581 T21575 arg2Of degradation,facilitates
R14057 T21581 T21576 arg1Of degradation,the
R14058 T21581 T21577 arg1Of degradation,K48-linked
R14059 T21581 T21580 arg1Of degradation,proteasomal
R14060 T21581 T21582 arg1Of degradation,of
R14061 T21583 T21582 arg2Of NIK,of
R14062 T21585 T21560 arg3Of keeping,forms
R14063 T21587 T21585 arg2Of levels,keeping
R14064 T21587 T21586 arg1Of levels,NIK
R14065 T21587 T21588 arg1Of levels,low
R14066 T21588 T21585 arg3Of low,keeping

GO-BP

Id Subject Object Predicate Lexical cue
T21751 173-184 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T21746 201-204 http://purl.obolibrary.org/obo/GO_0004704 denotes NIK
T21745 188-191 http://purl.obolibrary.org/obo/GO_0004704 denotes NIK
T21744 22-25 http://purl.obolibrary.org/obo/GO_0004704 denotes NIK

GO-MF

Id Subject Object Predicate Lexical cue
T21772 61-70 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin
T21767 201-204 http://purl.obolibrary.org/obo/GO_0004704 denotes NIK
T21766 188-191 http://purl.obolibrary.org/obo/GO_0004704 denotes NIK
T21765 22-25 http://purl.obolibrary.org/obo/GO_0004704 denotes NIK

GO-CC

Id Subject Object Predicate Lexical cue
T21779 44-78 http://purl.obolibrary.org/obo/GO_0000153 denotes complex with the ubiquitin ligases
T21778 44-78 http://purl.obolibrary.org/obo/GO_0000151 denotes complex with the ubiquitin ligases
T21776 16-21 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T21785 44-78 http://purl.obolibrary.org/obo/GO_0000836 denotes complex with the ubiquitin ligases
T21784 44-78 http://purl.obolibrary.org/obo/GO_0043494 denotes complex with the ubiquitin ligases
T21783 44-78 http://purl.obolibrary.org/obo/GO_0019005 denotes complex with the ubiquitin ligases
T21782 44-78 http://purl.obolibrary.org/obo/GO_0000152 denotes complex with the ubiquitin ligases
T21781 44-78 http://purl.obolibrary.org/obo/GO_0000837 denotes complex with the ubiquitin ligases
T21780 44-78 http://purl.obolibrary.org/obo/GO_0000835 denotes complex with the ubiquitin ligases

sentences

Id Subject Object Predicate Lexical cue
T21403 0-216 Sentence denotes In unstimulated cells NIK forms a cytosolic complex with the ubiquitin ligases TRAF2, TRAF3 and cIAP1/2, which facilitates the K48-linked polyubiquitination and proteasomal degradation of NIK, keeping NIK levels low.
T76 0-216 Sentence denotes In unstimulated cells NIK forms a cytosolic complex with the ubiquitin ligases TRAF2, TRAF3 and cIAP1/2, which facilitates the K48-linked polyubiquitination and proteasomal degradation of NIK, keeping NIK levels low.

simple1

Id Subject Object Predicate Lexical cue
T21825 79-84 Protein denotes TRAF2
T21824 22-25 Protein denotes NIK
T21830 201-204 Protein denotes NIK
T21829 188-191 Protein denotes NIK
T21828 102-103 Protein denotes 2
T21827 96-101 Protein denotes cIAP1
T21826 86-91 Protein denotes TRAF3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22376 96-101 Protein denotes cIAP1
T22375 86-91 Protein denotes TRAF3
T22374 79-84 Protein denotes TRAF2
T22373 22-25 Protein denotes NIK
T22372 201-204 Protein denotes NIK
T22371 188-191 Protein denotes NIK
T22405 138-156 Binding denotes polyubiquitination
T22404 173-184 Protein_catabolism denotes degradation
T22403 111-122 Positive_regulation denotes facilitates
T22377 102-103 Protein denotes 2
R14572 T22371 T22405 themeOf NIK,polyubiquitination
R14573 T22371 T22404 themeOf NIK,degradation
R14591 T22404 T22403 themeOf degradation,facilitates
R14592 T22405 T22403 themeOf polyubiquitination,facilitates

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T22144 173-184 Protein_catabolism denotes degradation
T22143 138-156 Binding denotes polyubiquitination
T22117 102-103 Protein denotes 2
T22116 96-101 Protein denotes cIAP1
T22115 86-91 Protein denotes TRAF3
T22114 79-84 Protein denotes TRAF2
T22113 22-25 Protein denotes NIK
T22112 201-204 Protein denotes NIK
T22111 188-191 Protein denotes NIK
R14449 T22111 T22143 themeOf NIK,polyubiquitination
R14450 T22111 T22144 themeOf NIK,degradation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T22483 161-215 Protein_catabolism denotes proteasomal degradation of NIK, keeping NIK levels low
T22464 127-137 Entity denotes K48-linked
T22459 3-21 Entity denotes unstimulated cells
T22453 86-91 Protein denotes TRAF3
T22443 57-84 Protein denotes the ubiquitin ligases TRAF2
T22442 96-104 Protein denotes cIAP1/2,
T22440 32-104 Entity denotes a cytosolic complex with the ubiquitin ligases TRAF2, TRAF3 and cIAP1/2,
T22436 201-204 Protein denotes NIK
T22427 22-25 Protein denotes NIK
T22426 185-215 Protein denotes of NIK, keeping NIK levels low
T22425 57-84 Protein denotes the ubiquitin ligases TRAF2
T22421 61-70 Protein denotes ubiquitin
R14596 T22426 T22483 themeOf "of NIK, keeping NIK levels low","proteasomal degradation of NIK, keeping NIK levels low"

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T22267 173-184 Protein_catabolism denotes degradation
T22266 201-204 Protein denotes NIK
T22265 188-191 Protein denotes NIK
T22264 96-103 Protein denotes cIAP1/2
T22263 86-91 Protein denotes TRAF3
T22262 79-84 Protein denotes TRAF2
T22261 61-70 Protein denotes ubiquitin
R14527 T22265 T22267 themeOf NIK,degradation

test3

Id Subject Object Predicate Lexical cue
T21370 201-204 Protein denotes NIK
T21369 188-191 Protein denotes NIK
T21368 173-184 Protein_catabolism denotes degradation
T21367 102-103 Protein denotes 2
T21366 96-101 Protein denotes cIAP1
T21365 86-91 Protein denotes TRAF3
T21364 79-84 Protein denotes TRAF2
T21363 22-25 Protein denotes NIK
T21335 201-204 Protein denotes NIK
T21334 188-191 Protein denotes NIK
T21333 102-103 Protein denotes 2
T21332 96-101 Protein denotes cIAP1
T21331 86-91 Protein denotes TRAF3
T21330 79-84 Protein denotes TRAF2
T21329 22-25 Protein denotes NIK
R13919 T21369 T21368 themeOf NIK,degradation