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PMC:3218875 / 13488-13690 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T3974 190-201 Protein_catabolism denotes degradation
T3928 184-189 Protein denotes TRAF3
T3927 146-147 Protein denotes 2
T3926 140-145 Protein denotes cIAP1
T3925 130-135 Protein denotes TRAF2
T3924 52-57 Protein denotes TRAF3
R2812 T3928 T3974 themeOf TRAF3,degradation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6707 201-202 . denotes .
T6706 190-201 NN denotes degradation
T6705 184-189 CD denotes TRAF3
T6704 173-183 JJ denotes subsequent
T6703 169-172 IN denotes for
T6702 159-168 JJ denotes essential
T6701 155-158 VBP denotes are
T6700 149-154 WDT denotes which
T6699 147-148 , denotes ,
T6698 140-147 NNP denotes cIAP1/2
T6691 108-109 , denotes ,
T6690 100-108 NN denotes receptor
T6689 96-99 DT denotes the
T6688 93-95 TO denotes to
T6687 90-92 PRP denotes it
T6686 79-89 VBG denotes recruiting
T6685 76-78 IN denotes by
T6684 68-75 JJ denotes complex
T6683 63-67 DT denotes this
T6682 58-62 IN denotes from
T6681 52-57 CD denotes TRAF3
T6680 45-51 VB denotes remove
T6679 42-44 TO denotes to
T6678 37-41 RB denotes only
T6677 33-36 RB denotes not
T6676 27-32 VBN denotes shown
T6675 22-26 VBN denotes been
T6674 18-21 VBZ denotes has
T6673 9-17 NN denotes ligation
T6672 0-8 NN denotes Receptor
T6697 136-139 CC denotes and
T6696 130-135 CD denotes TRAF2
T6695 122-129 VB denotes attract
T6694 119-121 TO denotes to
T6693 114-118 RB denotes also
T6692 110-113 CC denotes but
R4719 T6672 T6673 compound Receptor,ligation
R4720 T6673 T6676 nsubjpass ligation,shown
R4721 T6674 T6676 aux has,shown
R4723 T6675 T6676 auxpass been,shown
R4724 T6676 T6676 ROOT shown,shown
R4725 T6677 T6680 preconj not,remove
R4727 T6678 T6677 advmod only,not
R4728 T6679 T6680 aux to,remove
R4729 T6680 T6676 xcomp remove,shown
R4731 T6681 T6680 dobj TRAF3,remove
R4732 T6682 T6680 prep from,remove
R4733 T6683 T6684 det this,complex
R4735 T6684 T6682 pobj complex,from
R4736 T6685 T6680 prep by,remove
R4737 T6686 T6685 pcomp recruiting,by
R4739 T6687 T6686 dobj it,recruiting
R4740 T6688 T6686 prep to,recruiting
R4742 T6689 T6690 det the,receptor
R4743 T6690 T6688 pobj receptor,to
R4744 T6691 T6680 punct ",",remove
R4746 T6692 T6680 cc but,remove
R4747 T6693 T6692 advmod also,but
R4748 T6694 T6695 aux to,attract
R4749 T6695 T6680 conj attract,remove
R4750 T6696 T6695 dobj TRAF2,attract
R4751 T6697 T6695 cc and,attract
R4753 T6698 T6695 conj cIAP1/2,attract
R4754 T6699 T6698 punct ",",cIAP1/2
R4755 T6700 T6701 nsubj which,are
R4757 T6701 T6698 relcl are,cIAP1/2
R4758 T6702 T6701 acomp essential,are
R4759 T6703 T6702 prep for,essential
R4761 T6704 T6706 amod subsequent,degradation
R4762 T6705 T6706 nummod TRAF3,degradation
R4764 T6706 T6703 pobj degradation,for
R4765 T6707 T6676 punct .,shown

DLUT931

Id Subject Object Predicate Lexical cue
T7222 159-168 Positive_regulation denotes essential
T7221 190-201 Protein_catabolism denotes degradation
T7220 122-129 Binding denotes attract
T7219 45-51 Negative_regulation denotes remove
T7172 184-189 Protein denotes TRAF3
T7171 146-147 Protein denotes 2
T7170 140-145 Protein denotes cIAP1
T7169 130-135 Protein denotes TRAF2
T7168 52-57 Protein denotes TRAF3
R5078 T7168 T7219 themeOf TRAF3,remove
R5079 T7169 T7220 themeOf TRAF2,attract
R5080 T7169 T7222 causeOf TRAF2,essential
R5081 T7169 T7220 themeOf TRAF2,attract
R5082 T7170 T7220 themeOf cIAP1,attract
R5083 T7170 T7220 themeOf cIAP1,attract
R5084 T7170 T7222 causeOf cIAP1,essential
R5085 T7171 T7220 themeOf 2,attract
R5086 T7171 T7220 themeOf 2,attract
R5087 T7171 T7222 causeOf 2,essential
R5089 T7172 T7221 themeOf TRAF3,degradation
R5103 T7221 T7222 themeOf degradation,essential
R5105 T7221 T7222 themeOf degradation,essential
R5106 T7221 T7222 themeOf degradation,essential

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6908 130-135 http://www.uniprot.org/uniprot/Q12933 denotes TRAF2
T6936 184-189 http://www.uniprot.org/uniprot/Q13114 denotes TRAF3
T6935 52-57 http://www.uniprot.org/uniprot/Q13114 denotes TRAF3
T6914 140-145 http://www.uniprot.org/uniprot/Q13490 denotes cIAP1

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4549 184-189 Protein denotes TRAF3
T4548 146-147 Protein denotes 2
T4547 140-145 Protein denotes cIAP1
T4546 130-135 Protein denotes TRAF2
T4545 52-57 Protein denotes TRAF3

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T4458 52-57 Antecedent denotes TRAF3
T4457 90-92 Anaphor denotes it
R3031 T4457 T4458 boundBy it,TRAF3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5336 190-201 NN denotes degradation
T5335 184-189 NN denotes TRAF3
T5334 173-183 JJ denotes subsequent
T5333 169-172 IN denotes for
T5332 159-168 JJ denotes essential
T5331 155-158 VB denotes are
T5330 149-154 WDT denotes which
T5329 147-148 -COMMA- denotes ,
T5328 140-147 NN denotes cIAP1/2
T5327 136-139 CC denotes and
T5326 130-135 NN denotes TRAF2
T5325 122-129 VB denotes attract
T5324 119-121 TO denotes to
T5323 114-118 RB denotes also
T5322 110-113 CC denotes but
T5321 108-109 -COMMA- denotes ,
T5320 100-108 NN denotes receptor
T5319 96-99 DT denotes the
T5318 93-95 TO denotes to
T5317 90-92 PRP denotes it
T5316 79-89 VB denotes recruiting
T5315 76-78 IN denotes by
T5314 68-75 NN denotes complex
T5313 63-67 DT denotes this
T5312 58-62 IN denotes from
T5311 52-57 NN denotes TRAF3
T5310 45-51 VB denotes remove
T5309 42-44 TO denotes to
T5308 37-41 RB denotes only
T5307 33-36 RB denotes not
T5306 27-32 VB denotes shown
T5305 22-26 VB denotes been
T5304 18-21 VB denotes has
T5303 9-17 NN denotes ligation
T5302 0-8 NN denotes Receptor
R3772 T5303 T5302 arg1Of ligation,Receptor
R3773 T5303 T5304 arg1Of ligation,has
R3774 T5303 T5305 arg1Of ligation,been
R3775 T5303 T5306 arg2Of ligation,shown
R3776 T5306 T5304 arg2Of shown,has
R3777 T5306 T5305 arg2Of shown,been
R3778 T5306 T5309 modOf shown,to
R3779 T5306 T5324 modOf shown,to
R3780 T5308 T5307 arg1Of only,not
R3781 T5310 T5309 arg1Of remove,to
R3782 T5310 T5315 arg1Of remove,by
R3783 T5310 T5322 arg1Of remove,but
R3784 T5311 T5310 arg2Of TRAF3,remove
R3785 T5311 T5312 arg1Of TRAF3,from
R3786 T5314 T5312 arg2Of complex,from
R3787 T5314 T5313 arg1Of complex,this
R3788 T5316 T5315 arg2Of recruiting,by
R3789 T5316 T5318 arg1Of recruiting,to
R3790 T5317 T5316 arg2Of it,recruiting
R3791 T5320 T5318 arg2Of receptor,to
R3792 T5320 T5319 arg1Of receptor,the
R3793 T5322 T5308 arg1Of but,only
R3794 T5322 T5321 arg1Of but,","
R3795 T5322 T5323 arg1Of but,also
R3796 T5325 T5322 arg2Of attract,but
R3797 T5325 T5324 arg1Of attract,to
R3798 T5326 T5327 arg1Of TRAF2,and
R3799 T5327 T5325 arg2Of and,attract
R3800 T5327 T5329 arg1Of and,","
R3801 T5327 T5330 arg1Of and,which
R3802 T5327 T5331 arg1Of and,are
R3803 T5327 T5332 arg1Of and,essential
R3804 T5328 T5327 arg2Of cIAP1/2,and
R3805 T5332 T5331 arg2Of essential,are
R3806 T5332 T5333 arg1Of essential,for
R3807 T5336 T5333 arg2Of degradation,for
R3808 T5336 T5334 arg1Of degradation,subsequent
R3809 T5336 T5335 arg1Of degradation,TRAF3

GO-BP

Id Subject Object Predicate Lexical cue
T5523 190-201 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation

sentences

Id Subject Object Predicate Lexical cue
T4260 0-202 Sentence denotes Receptor ligation has been shown not only to remove TRAF3 from this complex by recruiting it to the receptor, but also to attract TRAF2 and cIAP1/2, which are essential for subsequent TRAF3 degradation.
T72 0-202 Sentence denotes Receptor ligation has been shown not only to remove TRAF3 from this complex by recruiting it to the receptor, but also to attract TRAF2 and cIAP1/2, which are essential for subsequent TRAF3 degradation.

simple1

Id Subject Object Predicate Lexical cue
T5878 184-189 Protein denotes TRAF3
T5877 146-147 Protein denotes 2
T5876 140-145 Protein denotes cIAP1
T5875 130-135 Protein denotes TRAF2
T5874 52-57 Protein denotes TRAF3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7957 159-168 Positive_regulation denotes essential
T7956 45-51 Negative_regulation denotes remove
T7955 190-201 Protein_catabolism denotes degradation
T7954 122-129 Binding denotes attract
T7907 184-189 Protein denotes TRAF3
T7906 146-147 Protein denotes 2
T7905 140-145 Protein denotes cIAP1
T7904 130-135 Protein denotes TRAF2
T7903 52-57 Protein denotes TRAF3
R5492 T7906 T7954 themeOf 2,attract
R5494 T7907 T7955 themeOf TRAF3,degradation
R5450 T7955 T7957 themeOf degradation,essential
R5485 T7903 T7956 themeOf TRAF3,remove
R5486 T7904 T7954 themeOf TRAF2,attract
R5488 T7905 T7954 themeOf cIAP1,attract
R5490 T7905 T7957 themeOf cIAP1,essential

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7074 45-51 Negative_regulation denotes remove
T7073 79-89 Binding denotes recruiting
T7072 122-129 Binding denotes attract
T7071 159-168 Positive_regulation denotes essential
T7070 190-201 Protein_catabolism denotes degradation
T7030 184-189 Protein denotes TRAF3
T7029 146-147 Protein denotes 2
T7028 140-145 Protein denotes cIAP1
T7027 130-135 Protein denotes TRAF2
T7026 52-57 Protein denotes TRAF3
R4960 T7026 T7074 themeOf TRAF3,remove
R4961 T7026 T7073 themeOf TRAF3,recruiting
R4962 T7027 T7072 themeOf TRAF2,attract
R4963 T7028 T7072 themeOf cIAP1,attract
R4964 T7029 T7072 themeOf 2,attract
R4965 T7030 T7070 themeOf TRAF3,degradation
R5052 T7070 T7071 themeOf degradation,essential

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8203 169-201 Protein_catabolism denotes for subsequent TRAF3 degradation
T8190 79-92 Binding denotes recruiting it
T8188 149-201 Regulation denotes which are essential for subsequent TRAF3 degradation
T8184 119-148 Binding denotes to attract TRAF2 and cIAP1/2,
T8173 42-109 Negative_regulation denotes to remove TRAF3 from this complex by recruiting it to the receptor,
T8112 0-8 Protein denotes Receptor
T8096 58-75 Entity denotes from this complex
T8091 96-109 Protein denotes the receptor,
T8069 184-189 Protein denotes TRAF3
T8028 140-148 Protein denotes cIAP1/2,
T8027 52-57 Protein denotes TRAF3
T8023 130-135 Protein denotes TRAF2
R5497 T8023 T8184 themeOf TRAF2,"to attract TRAF2 and cIAP1/2,"
R5500 T8027 T8173 themeOf TRAF3,"to remove TRAF3 from this complex by recruiting it to the receptor,"
R5501 T8028 T8184 themeOf "cIAP1/2,","to attract TRAF2 and cIAP1/2,"
R5532 T8069 T8203 themeOf TRAF3,for subsequent TRAF3 degradation
R5551 T8203 T8188 themeOf for subsequent TRAF3 degradation,which are essential for subsequent TRAF3 degradation

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7530 190-201 Protein_catabolism denotes degradation
T7529 190-201 Protein_catabolism denotes degradation
T7528 45-51 Negative_regulation denotes remove
T7527 140-147 Protein denotes cIAP1/2
T7526 130-135 Protein denotes TRAF2
T7525 52-57 Protein denotes TRAF3
R5220 T7525 T7528 themeOf TRAF3,remove
R5222 T7526 T7529 themeOf TRAF2,degradation
R5224 T7527 T7530 themeOf cIAP1/2,degradation

test3

Id Subject Object Predicate Lexical cue
T4205 190-201 Protein_catabolism denotes degradation
T4204 184-189 Protein denotes TRAF3
T4203 159-168 Positive_regulation denotes essential
T4202 146-147 Protein denotes 2
T4201 140-145 Protein denotes cIAP1
T4200 130-135 Protein denotes TRAF2
T4199 52-57 Protein denotes TRAF3
T4072 184-189 Protein denotes TRAF3
T4071 146-147 Protein denotes 2
T4070 140-145 Protein denotes cIAP1
T4069 130-135 Protein denotes TRAF2
T4068 52-57 Protein denotes TRAF3
R2894 T4204 T4205 themeOf TRAF3,degradation
R2895 T4205 T4203 themeOf degradation,essential