PMC:3218875 / 12686-13838
Annnotations
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3976 | 1117-1132 | Phosphorylation | denotes | phosphorylation |
| T3975 | 1065-1076 | Protein_catabolism | denotes | degradation |
| T3974 | 992-1003 | Protein_catabolism | denotes | degradation |
| T3973 | 771-782 | Protein_catabolism | denotes | degradation |
| T3972 | 541-555 | Protein_modification | denotes | -translational |
| T3971 | 520-529 | Regulation | denotes | regulated |
| T3970 | 451-466 | Phosphorylation | denotes | phosphorylation |
| T3931 | 1112-1116 | Protein | denotes | IKK1 |
| T3930 | 1091-1094 | Protein | denotes | NIK |
| T3929 | 1039-1042 | Protein | denotes | NIK |
| T3928 | 986-991 | Protein | denotes | TRAF3 |
| T3927 | 948-949 | Protein | denotes | 2 |
| T3926 | 942-947 | Protein | denotes | cIAP1 |
| T3925 | 932-937 | Protein | denotes | TRAF2 |
| T3924 | 854-859 | Protein | denotes | TRAF3 |
| T3923 | 740-743 | Protein | denotes | NIK |
| T3922 | 709-710 | Protein | denotes | 2 |
| T3921 | 703-708 | Protein | denotes | cIAP1 |
| T3920 | 692-697 | Protein | denotes | TRAF3 |
| T3919 | 685-690 | Protein | denotes | TRAF2 |
| T3918 | 644-647 | Protein | denotes | NIK |
| T3917 | 499-502 | Protein | denotes | NIK |
| T3916 | 493-496 | Protein | denotes | NIK |
| T3915 | 470-491 | Protein | denotes | NF-κB inducing kinase |
| T3914 | 421-425 | Protein | denotes | IKK1 |
| T3913 | 206-210 | Protein | denotes | RelB |
| T3912 | 177-180 | Protein | denotes | p52 |
| T3911 | 138-142 | Protein | denotes | p100 |
| T3910 | 104-108 | Protein | denotes | RANK |
| T3909 | 94-98 | Protein | denotes | CD40 |
| T3908 | 79-92 | Protein | denotes | BAFF receptor |
| T3907 | 55-77 | Protein | denotes | lymphotoxin β receptor |
| R2803 | T3911 | T3970 | themeOf | p100,phosphorylation |
| R2804 | T3915 | T3970 | causeOf | NF-κB inducing kinase,phosphorylation |
| R2805 | T3916 | T3915 | equivalentTo | NIK,NF-κB inducing kinase |
| R2806 | T3918 | T3973 | themeOf | NIK,degradation |
| R2807 | T3919 | T3973 | themeOf | TRAF2,degradation |
| R2808 | T3920 | T3973 | themeOf | TRAF3,degradation |
| R2809 | T3921 | T3973 | themeOf | cIAP1,degradation |
| R2810 | T3922 | T3973 | themeOf | 2,degradation |
| R2811 | T3923 | T3973 | themeOf | NIK,degradation |
| R2812 | T3928 | T3974 | themeOf | TRAF3,degradation |
| R2813 | T3931 | T3976 | themeOf | IKK1,phosphorylation |
| R2835 | T3972 | T3971 | themeOf | -translational,regulated |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6733 | 1151-1152 | . | denotes | . |
| T6732 | 1150-1151 | -RRB- | denotes | ) |
| T6731 | 1149-1150 | CD | denotes | 2 |
| T6730 | 1142-1148 | NNP | denotes | Figure |
| T6729 | 1141-1142 | -LRB- | denotes | ( |
| T6728 | 1139-1140 | NNP | denotes | ] |
| T6727 | 1134-1139 | CD | denotes | 28,29 |
| T6726 | 1133-1134 | NNP | denotes | [ |
| T6725 | 1117-1132 | NN | denotes | phosphorylation |
| T6724 | 1112-1116 | CD | denotes | IKK1 |
| T6723 | 1108-1111 | CC | denotes | and |
| T6722 | 1095-1107 | NN | denotes | accumulation |
| T6721 | 1091-1094 | NNP | denotes | NIK |
| T6720 | 1088-1090 | IN | denotes | in |
| T6719 | 1078-1087 | VBG | denotes | resulting |
| T6718 | 1076-1077 | , | denotes | , |
| T6717 | 1065-1076 | NN | denotes | degradation |
| T6716 | 1052-1064 | JJ | denotes | constitutive |
| T6715 | 1048-1051 | PRP$ | denotes | its |
| T6714 | 1043-1047 | IN | denotes | from |
| T6713 | 1039-1042 | NNP | denotes | NIK |
| T6712 | 1029-1038 | VBG | denotes | releasing |
| T6711 | 1026-1028 | TO | denotes | to |
| T6710 | 1014-1025 | VBZ | denotes | contributes |
| T6709 | 1009-1013 | DT | denotes | this |
| T6708 | 1005-1008 | PDT | denotes | All |
| T6707 | 1003-1004 | . | denotes | . |
| T6706 | 992-1003 | NN | denotes | degradation |
| T6705 | 986-991 | CD | denotes | TRAF3 |
| T6704 | 975-985 | JJ | denotes | subsequent |
| T6703 | 971-974 | IN | denotes | for |
| T6702 | 961-970 | JJ | denotes | essential |
| T6701 | 957-960 | VBP | denotes | are |
| T6700 | 951-956 | WDT | denotes | which |
| T6699 | 949-950 | , | denotes | , |
| T6698 | 942-949 | NNP | denotes | cIAP1/2 |
| T6691 | 910-911 | , | denotes | , |
| T6690 | 902-910 | NN | denotes | receptor |
| T6689 | 898-901 | DT | denotes | the |
| T6688 | 895-897 | TO | denotes | to |
| T6687 | 892-894 | PRP | denotes | it |
| T6686 | 881-891 | VBG | denotes | recruiting |
| T6685 | 878-880 | IN | denotes | by |
| T6684 | 870-877 | JJ | denotes | complex |
| T6683 | 865-869 | DT | denotes | this |
| T6682 | 860-864 | IN | denotes | from |
| T6681 | 854-859 | CD | denotes | TRAF3 |
| T6680 | 847-853 | VB | denotes | remove |
| T6679 | 844-846 | TO | denotes | to |
| T6678 | 839-843 | RB | denotes | only |
| T6677 | 835-838 | RB | denotes | not |
| T6676 | 829-834 | VBN | denotes | shown |
| T6675 | 824-828 | VBN | denotes | been |
| T6674 | 820-823 | VBZ | denotes | has |
| T6673 | 811-819 | NN | denotes | ligation |
| T6672 | 802-810 | NN | denotes | Receptor |
| T6671 | 800-801 | . | denotes | . |
| T6670 | 790-800 | JJ | denotes | proteasome |
| T6669 | 786-789 | DT | denotes | the |
| T6668 | 783-785 | IN | denotes | by |
| T6667 | 771-782 | NN | denotes | degradation |
| T6666 | 760-770 | JJ | denotes | continuous |
| T6665 | 756-759 | PRP$ | denotes | its |
| T6664 | 753-755 | TO | denotes | to |
| T6663 | 745-752 | VBG | denotes | leading |
| T6662 | 743-744 | , | denotes | , |
| T6661 | 740-743 | NNP | denotes | NIK |
| T6660 | 718-739 | VBZ | denotes | K48-polyubiquitinates |
| T6659 | 712-717 | WDT | denotes | which |
| T6658 | 710-711 | , | denotes | , |
| T6657 | 703-710 | NNP | denotes | cIAP1/2 |
| T6656 | 699-702 | CC | denotes | and |
| T6655 | 697-698 | , | denotes | , |
| T6654 | 692-697 | CD | denotes | TRAF3 |
| T6653 | 690-691 | , | denotes | , |
| T6652 | 685-690 | CD | denotes | TRAF2 |
| T6651 | 680-684 | IN | denotes | with |
| T6650 | 672-679 | NN | denotes | complex |
| T6649 | 660-671 | JJ | denotes | cytoplasmic |
| T6648 | 658-659 | DT | denotes | a |
| T6647 | 655-657 | IN | denotes | in |
| T6646 | 648-654 | VBZ | denotes | occurs |
| T6645 | 644-647 | NNP | denotes | NIK |
| T6644 | 642-643 | , | denotes | , |
| T6643 | 637-642 | NNS | denotes | cells |
| T6642 | 624-636 | JJ | denotes | unstimulated |
| T6641 | 621-623 | IN | denotes | In |
| T6640 | 619-620 | . | denotes | . |
| T6639 | 614-619 | NNS | denotes | types |
| T6638 | 609-613 | NN | denotes | cell |
| T6637 | 604-608 | JJS | denotes | most |
| T6636 | 601-603 | IN | denotes | in |
| T6635 | 594-600 | NNS | denotes | levels |
| T6634 | 590-593 | JJ | denotes | low |
| T6633 | 580-589 | RB | denotes | extremely |
| T6632 | 577-579 | IN | denotes | at |
| T6631 | 569-576 | JJ | denotes | present |
| T6630 | 566-568 | VBZ | denotes | is |
| T6629 | 562-565 | CC | denotes | and |
| T6628 | 556-561 | NN | denotes | level |
| T6627 | 537-555 | JJ | denotes | post-translational |
| T6626 | 533-536 | DT | denotes | the |
| T6625 | 530-532 | IN | denotes | at |
| T6624 | 520-529 | VBN | denotes | regulated |
| T6623 | 506-519 | RB | denotes | predominantly |
| T6622 | 503-505 | VBZ | denotes | is |
| T6621 | 499-502 | NNP | denotes | NIK |
| T6620 | 497-498 | . | denotes | . |
| T6619 | 496-497 | -RRB- | denotes | ) |
| T6618 | 493-496 | NNP | denotes | NIK |
| T6617 | 492-493 | -LRB- | denotes | ( |
| T6616 | 485-491 | NN | denotes | kinase |
| T6615 | 476-484 | VBG | denotes | inducing |
| T6614 | 470-475 | JJ | denotes | NF-κB |
| T6613 | 467-469 | IN | denotes | by |
| T6612 | 451-466 | NN | denotes | phosphorylation |
| T6611 | 446-450 | IN | denotes | upon |
| T6610 | 436-445 | VBN | denotes | activated |
| T6609 | 433-435 | VBZ | denotes | is |
| T6608 | 427-432 | WDT | denotes | which |
| T6607 | 425-426 | , | denotes | , |
| T6606 | 421-425 | NNP | denotes | IKK1 |
| T6605 | 418-420 | IN | denotes | on |
| T6604 | 408-417 | JJ | denotes | dependent |
| T6603 | 399-407 | RB | denotes | strictly |
| T6602 | 396-398 | VBZ | denotes | is |
| T6601 | 388-395 | NN | denotes | pathway |
| T6600 | 382-387 | NN | denotes | NF-κB |
| T6599 | 369-381 | JJ | denotes | noncanonical |
| T6598 | 365-368 | DT | denotes | The |
| T6597 | 363-364 | NNP | denotes | ] |
| T6596 | 361-363 | CD | denotes | 27 |
| T6595 | 360-361 | NNP | denotes | [ |
| T6594 | 341-359 | NN | denotes | osteoclastogenesis |
| T6593 | 337-340 | CC | denotes | and |
| T6592 | 335-336 | , | denotes | , |
| T6591 | 324-335 | NN | denotes | development |
| T6590 | 318-323 | NN | denotes | organ |
| T6589 | 309-317 | JJ | denotes | lymphoid |
| T6588 | 299-308 | JJ | denotes | secondary |
| T6587 | 297-298 | , | denotes | , |
| T6586 | 286-297 | NN | denotes | development |
| T6585 | 279-285 | JJ | denotes | B-cell |
| T6584 | 271-278 | VBP | denotes | control |
| T6583 | 266-270 | WDT | denotes | that |
| T6582 | 260-265 | NNS | denotes | genes |
| T6581 | 253-259 | NN | denotes | target |
| T6580 | 250-252 | IN | denotes | of |
| T6579 | 246-249 | NN | denotes | set |
| T6578 | 237-245 | JJ | denotes | distinct |
| T6577 | 235-236 | DT | denotes | a |
| T6576 | 225-234 | VBZ | denotes | regulates |
| T6575 | 217-224 | NN | denotes | subunit |
| T6574 | 211-216 | NNP | denotes | NF-κB |
| T6573 | 206-210 | NNP | denotes | RelB |
| T6572 | 202-205 | DT | denotes | the |
| T6571 | 197-201 | IN | denotes | with |
| T6570 | 188-196 | RB | denotes | together |
| T6569 | 182-187 | WDT | denotes | which |
| T6568 | 180-181 | , | denotes | , |
| T6567 | 177-180 | VB | denotes | p52 |
| T6566 | 174-176 | TO | denotes | to |
| T6565 | 163-173 | JJ | denotes | proteasome |
| T6564 | 159-162 | DT | denotes | the |
| T6563 | 156-158 | IN | denotes | by |
| T6562 | 146-155 | VBN | denotes | processed |
| T6561 | 143-145 | VBZ | denotes | is |
| T6560 | 138-142 | NN | denotes | p100 |
| T6559 | 136-137 | , | denotes | , |
| T6558 | 129-136 | NN | denotes | pathway |
| T6557 | 124-128 | DT | denotes | this |
| T6556 | 121-123 | IN | denotes | In |
| T6555 | 119-120 | . | denotes | . |
| T6554 | 118-119 | -RRB- | denotes | ) |
| T6553 | 117-118 | CD | denotes | 2 |
| T6552 | 110-116 | NNP | denotes | Figure |
| T6551 | 109-110 | -LRB- | denotes | ( |
| T6550 | 104-108 | NNP | denotes | RANK |
| T6549 | 100-103 | CC | denotes | and |
| T6548 | 98-99 | , | denotes | , |
| T6547 | 94-98 | NNP | denotes | CD40 |
| T6546 | 92-93 | , | denotes | , |
| T6545 | 84-92 | NN | denotes | receptor |
| T6544 | 79-83 | NN | denotes | BAFF |
| T6543 | 77-78 | , | denotes | , |
| T6542 | 69-77 | NN | denotes | receptor |
| T6541 | 67-68 | NN | denotes | β |
| T6540 | 55-66 | NN | denotes | lymphotoxin |
| T6539 | 51-54 | DT | denotes | the |
| T6538 | 48-50 | IN | denotes | by |
| T6537 | 38-47 | VBN | denotes | activated |
| T6536 | 35-37 | VB | denotes | be |
| T6535 | 31-34 | MD | denotes | can |
| T6534 | 23-30 | NN | denotes | pathway |
| T6533 | 17-22 | NN | denotes | NF-κB |
| T6532 | 4-16 | JJ | denotes | noncanonical |
| T6531 | 0-3 | DT | denotes | The |
| T6697 | 938-941 | CC | denotes | and |
| T6696 | 932-937 | CD | denotes | TRAF2 |
| T6695 | 924-931 | VB | denotes | attract |
| T6694 | 921-923 | TO | denotes | to |
| T6693 | 916-920 | RB | denotes | also |
| T6692 | 912-915 | CC | denotes | but |
| R4536 | T6539 | T6542 | det | the,receptor |
| R4537 | T6540 | T6542 | nmod | lymphotoxin,receptor |
| R4539 | T6541 | T6542 | compound | β,receptor |
| R4540 | T6542 | T6538 | pobj | receptor,by |
| R4542 | T6543 | T6542 | punct | ",",receptor |
| R4543 | T6544 | T6545 | compound | BAFF,receptor |
| R4544 | T6545 | T6542 | conj | receptor,receptor |
| R4546 | T6546 | T6545 | punct | ",",receptor |
| R4547 | T6547 | T6545 | conj | CD40,receptor |
| R4548 | T6548 | T6547 | punct | ",",CD40 |
| R4549 | T6549 | T6547 | cc | and,CD40 |
| R4550 | T6550 | T6547 | conj | RANK,CD40 |
| R4551 | T6551 | T6552 | punct | (,Figure |
| R4552 | T6552 | T6550 | appos | Figure,RANK |
| R4555 | T6553 | T6552 | nummod | 2,Figure |
| R4557 | T6554 | T6550 | punct | ),RANK |
| R4558 | T6555 | T6537 | punct | .,activated |
| R4560 | T6556 | T6562 | prep | In,processed |
| R4561 | T6557 | T6558 | det | this,pathway |
| R4563 | T6558 | T6556 | pobj | pathway,In |
| R4564 | T6559 | T6562 | punct | ",",processed |
| R4565 | T6560 | T6562 | nsubjpass | p100,processed |
| R4566 | T6561 | T6562 | auxpass | is,processed |
| R4568 | T6562 | T6562 | ROOT | processed,processed |
| R4569 | T6563 | T6562 | agent | by,processed |
| R4571 | T6564 | T6565 | det | the,proteasome |
| R4572 | T6565 | T6563 | pobj | proteasome,by |
| R4573 | T6566 | T6565 | prep | to,proteasome |
| R4575 | T6567 | T6566 | pobj | p52,to |
| R4576 | T6568 | T6567 | punct | ",",p52 |
| R4578 | T6569 | T6576 | nsubj | which,regulates |
| R4580 | T6570 | T6571 | advmod | together,with |
| R4582 | T6571 | T6576 | prep | with,regulates |
| R4583 | T6572 | T6575 | det | the,subunit |
| R4585 | T6573 | T6575 | compound | RelB,subunit |
| R4586 | T6574 | T6575 | compound | NF-κB,subunit |
| R4587 | T6575 | T6571 | pobj | subunit,with |
| R4588 | T6576 | T6565 | relcl | regulates,proteasome |
| R4590 | T6577 | T6579 | det | a,set |
| R4591 | T6578 | T6579 | amod | distinct,set |
| R4593 | T6579 | T6576 | dobj | set,regulates |
| R4594 | T6580 | T6579 | prep | of,set |
| R4595 | T6581 | T6582 | compound | target,genes |
| R4597 | T6582 | T6580 | pobj | genes,of |
| R4598 | T6583 | T6584 | nsubj | that,control |
| R4599 | T6584 | T6582 | relcl | control,genes |
| R4600 | T6585 | T6586 | amod | B-cell,development |
| R4601 | T6586 | T6584 | dobj | development,control |
| R4602 | T6587 | T6586 | punct | ",",development |
| R4603 | T6588 | T6591 | amod | secondary,development |
| R4604 | T6589 | T6591 | amod | lymphoid,development |
| R4606 | T6590 | T6591 | compound | organ,development |
| R4607 | T6591 | T6586 | conj | development,development |
| R4608 | T6592 | T6591 | punct | ",",development |
| R4609 | T6593 | T6591 | cc | and,development |
| R4611 | T6594 | T6595 | compound | osteoclastogenesis,[ |
| R4612 | T6595 | T6579 | appos | [,set |
| R4613 | T6596 | T6597 | nummod | 27,] |
| R4615 | T6597 | T6597 | ROOT | ],] |
| R4616 | T6598 | T6601 | det | The,pathway |
| R4617 | T6599 | T6601 | amod | noncanonical,pathway |
| R4619 | T6600 | T6601 | compound | NF-κB,pathway |
| R4620 | T6601 | T6602 | nsubj | pathway,is |
| R4622 | T6602 | T6602 | ROOT | is,is |
| R4623 | T6603 | T6604 | advmod | strictly,dependent |
| R4624 | T6604 | T6602 | acomp | dependent,is |
| R4625 | T6605 | T6604 | prep | on,dependent |
| R4627 | T6606 | T6605 | pobj | IKK1,on |
| R4629 | T6607 | T6606 | punct | ",",IKK1 |
| R4630 | T6608 | T6610 | nsubjpass | which,activated |
| R4631 | T6609 | T6610 | auxpass | is,activated |
| R4633 | T6610 | T6606 | relcl | activated,IKK1 |
| R4634 | T6611 | T6610 | prep | upon,activated |
| R4635 | T6612 | T6611 | pobj | phosphorylation,upon |
| R4636 | T6613 | T6610 | agent | by,activated |
| R4638 | T6614 | T6615 | advmod | NF-κB,inducing |
| R4639 | T6615 | T6613 | pcomp | inducing,by |
| R4640 | T6616 | T6615 | dobj | kinase,inducing |
| R4642 | T6617 | T6618 | punct | (,NIK |
| R4643 | T6618 | T6616 | parataxis | NIK,kinase |
| R4644 | T6619 | T6618 | punct | ),NIK |
| R4646 | T6620 | T6602 | punct | .,is |
| R4647 | T6621 | T6624 | nsubjpass | NIK,regulated |
| R4648 | T6622 | T6624 | auxpass | is,regulated |
| R4649 | T6623 | T6624 | advmod | predominantly,regulated |
| R4650 | T6624 | T6624 | ROOT | regulated,regulated |
| R4651 | T6625 | T6624 | prep | at,regulated |
| R4653 | T6626 | T6628 | det | the,level |
| R4654 | T6627 | T6628 | amod | post-translational,level |
| R4655 | T6628 | T6625 | pobj | level,at |
| R4656 | T6629 | T6624 | cc | and,regulated |
| R4658 | T6630 | T6624 | conj | is,regulated |
| R4659 | T6631 | T6630 | acomp | present,is |
| R4660 | T6632 | T6631 | prep | at,present |
| R4662 | T6633 | T6634 | advmod | extremely,low |
| R4663 | T6634 | T6635 | amod | low,levels |
| R4665 | T6635 | T6632 | pobj | levels,at |
| R4668 | T6636 | T6635 | prep | in,levels |
| R4670 | T6637 | T6639 | amod | most,types |
| R4671 | T6638 | T6639 | compound | cell,types |
| R4672 | T6639 | T6636 | pobj | types,in |
| R4674 | T6640 | T6630 | punct | .,is |
| R4675 | T6641 | T6646 | prep | In,occurs |
| R4677 | T6642 | T6643 | amod | unstimulated,cells |
| R4678 | T6643 | T6641 | pobj | cells,In |
| R4679 | T6644 | T6646 | punct | ",",occurs |
| R4681 | T6645 | T6646 | nsubj | NIK,occurs |
| R4682 | T6646 | T6646 | ROOT | occurs,occurs |
| R4684 | T6647 | T6646 | prep | in,occurs |
| R4687 | T6648 | T6650 | det | a,complex |
| R4688 | T6649 | T6650 | compound | cytoplasmic,complex |
| R4690 | T6650 | T6647 | pobj | complex,in |
| R4691 | T6651 | T6650 | prep | with,complex |
| R4693 | T6652 | T6651 | pobj | TRAF2,with |
| R4694 | T6653 | T6652 | punct | ",",TRAF2 |
| R4695 | T6654 | T6652 | conj | TRAF3,TRAF2 |
| R4697 | T6655 | T6646 | punct | ",",occurs |
| R4698 | T6656 | T6646 | cc | and,occurs |
| R4699 | T6657 | T6663 | nsubj | cIAP1/2,leading |
| R4700 | T6658 | T6657 | punct | ",",cIAP1/2 |
| R4701 | T6659 | T6660 | nsubj | which,K48-polyubiquitinates |
| R4703 | T6660 | T6657 | relcl | K48-polyubiquitinates,cIAP1/2 |
| R4704 | T6661 | T6660 | dobj | NIK,K48-polyubiquitinates |
| R4705 | T6662 | T6657 | punct | ",",cIAP1/2 |
| R4707 | T6663 | T6646 | conj | leading,occurs |
| R4708 | T6664 | T6663 | prep | to,leading |
| R4709 | T6665 | T6667 | poss | its,degradation |
| R4711 | T6666 | T6667 | amod | continuous,degradation |
| R4712 | T6667 | T6664 | pobj | degradation,to |
| R4713 | T6668 | T6667 | prep | by,degradation |
| R4715 | T6669 | T6670 | det | the,proteasome |
| R4716 | T6670 | T6668 | pobj | proteasome,by |
| R4717 | T6671 | T6663 | punct | .,leading |
| R4719 | T6672 | T6673 | compound | Receptor,ligation |
| R4720 | T6673 | T6676 | nsubjpass | ligation,shown |
| R4721 | T6674 | T6676 | aux | has,shown |
| R4723 | T6675 | T6676 | auxpass | been,shown |
| R4724 | T6676 | T6676 | ROOT | shown,shown |
| R4725 | T6677 | T6680 | preconj | not,remove |
| R4727 | T6678 | T6677 | advmod | only,not |
| R4728 | T6679 | T6680 | aux | to,remove |
| R4729 | T6680 | T6676 | xcomp | remove,shown |
| R4731 | T6681 | T6680 | dobj | TRAF3,remove |
| R4732 | T6682 | T6680 | prep | from,remove |
| R4733 | T6683 | T6684 | det | this,complex |
| R4735 | T6684 | T6682 | pobj | complex,from |
| R4736 | T6685 | T6680 | prep | by,remove |
| R4737 | T6686 | T6685 | pcomp | recruiting,by |
| R4739 | T6687 | T6686 | dobj | it,recruiting |
| R4740 | T6688 | T6686 | prep | to,recruiting |
| R4742 | T6689 | T6690 | det | the,receptor |
| R4743 | T6690 | T6688 | pobj | receptor,to |
| R4744 | T6691 | T6680 | punct | ",",remove |
| R4746 | T6692 | T6680 | cc | but,remove |
| R4747 | T6693 | T6692 | advmod | also,but |
| R4748 | T6694 | T6695 | aux | to,attract |
| R4749 | T6695 | T6680 | conj | attract,remove |
| R4750 | T6696 | T6695 | dobj | TRAF2,attract |
| R4751 | T6697 | T6695 | cc | and,attract |
| R4752 | T6531 | T6534 | det | The,pathway |
| R4753 | T6698 | T6695 | conj | cIAP1/2,attract |
| R4754 | T6699 | T6698 | punct | ",",cIAP1/2 |
| R4755 | T6700 | T6701 | nsubj | which,are |
| R4756 | T6532 | T6534 | amod | noncanonical,pathway |
| R4757 | T6701 | T6698 | relcl | are,cIAP1/2 |
| R4758 | T6702 | T6701 | acomp | essential,are |
| R4759 | T6703 | T6702 | prep | for,essential |
| R4760 | T6533 | T6534 | compound | NF-κB,pathway |
| R4761 | T6704 | T6706 | amod | subsequent,degradation |
| R4762 | T6705 | T6706 | nummod | TRAF3,degradation |
| R4763 | T6534 | T6537 | nsubjpass | pathway,activated |
| R4764 | T6706 | T6703 | pobj | degradation,for |
| R4765 | T6707 | T6676 | punct | .,shown |
| R4766 | T6708 | T6709 | predet | All,this |
| R4767 | T6535 | T6537 | aux | can,activated |
| R4768 | T6709 | T6710 | nsubj | this,contributes |
| R4769 | T6710 | T6710 | ROOT | contributes,contributes |
| R4770 | T6536 | T6537 | auxpass | be,activated |
| R4771 | T6711 | T6710 | prep | to,contributes |
| R4772 | T6712 | T6711 | pcomp | releasing,to |
| R4773 | T6713 | T6712 | dobj | NIK,releasing |
| R4774 | T6537 | T6537 | ROOT | activated,activated |
| R4775 | T6714 | T6710 | prep | from,contributes |
| R4776 | T6715 | T6717 | poss | its,degradation |
| R4777 | T6716 | T6717 | amod | constitutive,degradation |
| R4778 | T6538 | T6537 | agent | by,activated |
| R4779 | T6717 | T6714 | pobj | degradation,from |
| R4780 | T6718 | T6710 | punct | ",",contributes |
| R4781 | T6719 | T6710 | advcl | resulting,contributes |
| R4782 | T6733 | T6710 | punct | .,contributes |
| R4783 | T6720 | T6719 | prep | in,resulting |
| R4784 | T6721 | T6722 | compound | NIK,accumulation |
| R4785 | T6722 | T6720 | pobj | accumulation,in |
| R4786 | T6723 | T6722 | cc | and,accumulation |
| R4787 | T6724 | T6725 | nummod | IKK1,phosphorylation |
| R4789 | T6725 | T6728 | compound | phosphorylation,] |
| R4790 | T6726 | T6728 | compound | [,] |
| R4792 | T6727 | T6728 | compound | "28,29",] |
| R4793 | T6728 | T6728 | ROOT | ],] |
| R4795 | T6729 | T6730 | punct | (,Figure |
| R4796 | T6730 | T6728 | appos | Figure,] |
| R4797 | T6731 | T6730 | nummod | 2,Figure |
| R4798 | T6732 | T6730 | punct | ),Figure |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7225 | 1095-1107 | Localization | denotes | accumulation |
| T7224 | 1065-1076 | Protein_catabolism | denotes | degradation |
| T7223 | 1029-1038 | Localization | denotes | releasing |
| T7222 | 961-970 | Positive_regulation | denotes | essential |
| T7221 | 992-1003 | Protein_catabolism | denotes | degradation |
| T7220 | 924-931 | Binding | denotes | attract |
| T7219 | 847-853 | Negative_regulation | denotes | remove |
| T7218 | 745-752 | Positive_regulation | denotes | leading |
| T7217 | 771-782 | Protein_catabolism | denotes | degradation |
| T7216 | 520-529 | Regulation | denotes | regulated |
| T7215 | 436-445 | Positive_regulation | denotes | activated |
| T7214 | 146-155 | Binding | denotes | processed |
| T7175 | 1112-1116 | Protein | denotes | IKK1 |
| T7174 | 1091-1094 | Protein | denotes | NIK |
| T7173 | 1039-1042 | Protein | denotes | NIK |
| T7172 | 986-991 | Protein | denotes | TRAF3 |
| T7171 | 948-949 | Protein | denotes | 2 |
| T7170 | 942-947 | Protein | denotes | cIAP1 |
| T7169 | 932-937 | Protein | denotes | TRAF2 |
| T7168 | 854-859 | Protein | denotes | TRAF3 |
| T7167 | 709-710 | Protein | denotes | 2 |
| T7166 | 703-708 | Protein | denotes | cIAP1 |
| T7165 | 692-697 | Protein | denotes | TRAF3 |
| T7164 | 685-690 | Protein | denotes | TRAF2 |
| T7163 | 644-647 | Protein | denotes | NIK |
| T7162 | 740-743 | Protein | denotes | NIK |
| T7161 | 499-502 | Protein | denotes | NIK |
| T7160 | 493-496 | Protein | denotes | NIK |
| T7159 | 470-491 | Protein | denotes | NF-κB inducing kinase |
| T7158 | 421-425 | Protein | denotes | IKK1 |
| T7157 | 206-210 | Protein | denotes | RelB |
| T7156 | 177-180 | Protein | denotes | p52 |
| T7155 | 138-142 | Protein | denotes | p100 |
| T7154 | 104-108 | Protein | denotes | RANK |
| T7153 | 94-98 | Protein | denotes | CD40 |
| T7152 | 79-92 | Protein | denotes | BAFF receptor |
| T7151 | 55-77 | Protein | denotes | lymphotoxin β receptor |
| T7228 | 1078-1087 | Positive_regulation | denotes | resulting |
| T7227 | 1014-1025 | Positive_regulation | denotes | contributes |
| T7226 | 1117-1132 | Phosphorylation | denotes | phosphorylation |
| R5068 | T7155 | T7214 | themeOf | p100,processed |
| R5069 | T7156 | T7214 | themeOf | p52,processed |
| R5070 | T7158 | T7215 | themeOf | IKK1,activated |
| R5071 | T7159 | T7215 | causeOf | NF-κB inducing kinase,activated |
| R5073 | T7161 | T7216 | themeOf | NIK,regulated |
| R5074 | T7163 | T7217 | themeOf | NIK,degradation |
| R5077 | T7167 | T7217 | themeOf | 2,degradation |
| R5078 | T7168 | T7219 | themeOf | TRAF3,remove |
| R5079 | T7169 | T7220 | themeOf | TRAF2,attract |
| R5080 | T7169 | T7222 | causeOf | TRAF2,essential |
| R5081 | T7169 | T7220 | themeOf | TRAF2,attract |
| R5082 | T7170 | T7220 | themeOf | cIAP1,attract |
| R5083 | T7170 | T7220 | themeOf | cIAP1,attract |
| R5084 | T7170 | T7222 | causeOf | cIAP1,essential |
| R5085 | T7171 | T7220 | themeOf | 2,attract |
| R5086 | T7171 | T7220 | themeOf | 2,attract |
| R5087 | T7171 | T7222 | causeOf | 2,essential |
| R5089 | T7172 | T7221 | themeOf | TRAF3,degradation |
| R5090 | T7173 | T7223 | themeOf | NIK,releasing |
| R5091 | T7173 | T7224 | themeOf | NIK,degradation |
| R5092 | T7174 | T7225 | themeOf | NIK,accumulation |
| R5093 | T7175 | T7226 | themeOf | IKK1,phosphorylation |
| R5097 | T7217 | T7218 | themeOf | degradation,leading |
| R5102 | T7217 | T7218 | themeOf | degradation,leading |
| R5103 | T7221 | T7222 | themeOf | degradation,essential |
| R5105 | T7221 | T7222 | themeOf | degradation,essential |
| R5106 | T7221 | T7222 | themeOf | degradation,essential |
| R5110 | T7223 | T7227 | themeOf | releasing,contributes |
| R5111 | T7225 | T7228 | themeOf | accumulation,resulting |
| R5112 | T7226 | T7228 | themeOf | phosphorylation,resulting |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6913 | 703-708 | http://www.uniprot.org/uniprot/Q13490 | denotes | cIAP1 |
| T6908 | 932-937 | http://www.uniprot.org/uniprot/Q12933 | denotes | TRAF2 |
| T6907 | 685-690 | http://www.uniprot.org/uniprot/Q12933 | denotes | TRAF2 |
| T6894 | 1112-1116 | http://www.uniprot.org/uniprot/Q60680-2 | denotes | IKK1 |
| T6893 | 421-425 | http://www.uniprot.org/uniprot/Q60680-2 | denotes | IKK1 |
| T6889 | 1112-1116 | http://www.uniprot.org/uniprot/O15111 | denotes | IKK1 |
| T6888 | 421-425 | http://www.uniprot.org/uniprot/O15111 | denotes | IKK1 |
| T6875 | 177-180 | http://www.uniprot.org/uniprot/Q00653 | denotes | p52 |
| T6936 | 986-991 | http://www.uniprot.org/uniprot/Q13114 | denotes | TRAF3 |
| T6935 | 854-859 | http://www.uniprot.org/uniprot/Q13114 | denotes | TRAF3 |
| T6934 | 692-697 | http://www.uniprot.org/uniprot/Q13114 | denotes | TRAF3 |
| T6933 | 1091-1094 | http://www.uniprot.org/uniprot/Q99558 | denotes | NIK |
| T6932 | 1039-1042 | http://www.uniprot.org/uniprot/Q99558 | denotes | NIK |
| T6931 | 740-743 | http://www.uniprot.org/uniprot/Q99558 | denotes | NIK |
| T6930 | 644-647 | http://www.uniprot.org/uniprot/Q99558 | denotes | NIK |
| T6929 | 499-502 | http://www.uniprot.org/uniprot/Q99558 | denotes | NIK |
| T6928 | 493-496 | http://www.uniprot.org/uniprot/Q99558 | denotes | NIK |
| T6927 | 206-210 | http://www.uniprot.org/uniprot/Q01201 | denotes | RelB |
| T6921 | 94-98 | http://www.uniprot.org/uniprot/P25942 | denotes | CD40 |
| T6914 | 942-947 | http://www.uniprot.org/uniprot/Q13490 | denotes | cIAP1 |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4552 | 1112-1116 | Protein | denotes | IKK1 |
| T4551 | 1091-1094 | Protein | denotes | NIK |
| T4550 | 1039-1042 | Protein | denotes | NIK |
| T4549 | 986-991 | Protein | denotes | TRAF3 |
| T4548 | 948-949 | Protein | denotes | 2 |
| T4547 | 942-947 | Protein | denotes | cIAP1 |
| T4546 | 932-937 | Protein | denotes | TRAF2 |
| T4545 | 854-859 | Protein | denotes | TRAF3 |
| T4544 | 740-743 | Protein | denotes | NIK |
| T4543 | 709-710 | Protein | denotes | 2 |
| T4542 | 703-708 | Protein | denotes | cIAP1 |
| T4541 | 692-697 | Protein | denotes | TRAF3 |
| T4540 | 685-690 | Protein | denotes | TRAF2 |
| T4539 | 644-647 | Protein | denotes | NIK |
| T4538 | 499-502 | Protein | denotes | NIK |
| T4537 | 493-496 | Protein | denotes | NIK |
| T4536 | 470-491 | Protein | denotes | NF-κB inducing kinase |
| T4535 | 421-425 | Protein | denotes | IKK1 |
| T4534 | 206-210 | Protein | denotes | RelB |
| T4533 | 177-180 | Protein | denotes | p52 |
| T4532 | 138-142 | Protein | denotes | p100 |
| T4531 | 104-108 | Protein | denotes | RANK |
| T4530 | 94-98 | Protein | denotes | CD40 |
| T4529 | 79-92 | Protein | denotes | BAFF receptor |
| T4528 | 55-77 | Protein | denotes | lymphotoxin β receptor |
bionlp-st-ge-2016-coref
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4460 | 1039-1042 | Antecedent | denotes | NIK |
| T4459 | 1048-1051 | Anaphor | denotes | its |
| T4458 | 854-859 | Antecedent | denotes | TRAF3 |
| T4457 | 892-894 | Anaphor | denotes | it |
| T4456 | 740-743 | Antecedent | denotes | NIK |
| T4455 | 756-759 | Anaphor | denotes | its |
| T4454 | 421-425 | Antecedent | denotes | IKK1 |
| T4453 | 427-432 | Anaphor | denotes | which |
| R3029 | T4453 | T4454 | boundBy | which,IKK1 |
| R3030 | T4455 | T4456 | boundBy | its,NIK |
| R3031 | T4457 | T4458 | boundBy | it,TRAF3 |
| R3032 | T4459 | T4460 | boundBy | its,NIK |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 21639951-21173796-4289456 | 361-363 | 21173796 | denotes | 27 |
| 21639951-11520989-4289457 | 1134-1136 | 11520989 | denotes | 28 |
| 21639951-15140882-4289458 | 1137-1139 | 15140882 | denotes | 29 |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5361 | 1150-1151 | -RRB- | denotes | ) |
| T5360 | 1149-1150 | CD | denotes | 2 |
| T5359 | 1142-1148 | NN | denotes | Figure |
| T5358 | 1141-1142 | -LRB- | denotes | ( |
| T5357 | 1139-1140 | -RRB- | denotes | ] |
| T5356 | 1134-1139 | CD | denotes | 28,29 |
| T5355 | 1133-1134 | -LRB- | denotes | [ |
| T5354 | 1117-1132 | NN | denotes | phosphorylation |
| T5353 | 1112-1116 | NN | denotes | IKK1 |
| T5352 | 1108-1111 | CC | denotes | and |
| T5351 | 1095-1107 | NN | denotes | accumulation |
| T5350 | 1091-1094 | NN | denotes | NIK |
| T5349 | 1088-1090 | IN | denotes | in |
| T5348 | 1078-1087 | VB | denotes | resulting |
| T5347 | 1076-1077 | -COMMA- | denotes | , |
| T5346 | 1065-1076 | NN | denotes | degradation |
| T5345 | 1052-1064 | JJ | denotes | constitutive |
| T5344 | 1048-1051 | PRP-DOLLAR- | denotes | its |
| T5343 | 1043-1047 | IN | denotes | from |
| T5342 | 1039-1042 | NN | denotes | NIK |
| T5341 | 1029-1038 | VB | denotes | releasing |
| T5340 | 1026-1028 | TO | denotes | to |
| T5339 | 1014-1025 | VB | denotes | contributes |
| T5338 | 1009-1013 | DT | denotes | this |
| T5337 | 1005-1008 | PDT | denotes | All |
| T5336 | 992-1003 | NN | denotes | degradation |
| T5335 | 986-991 | NN | denotes | TRAF3 |
| T5334 | 975-985 | JJ | denotes | subsequent |
| T5333 | 971-974 | IN | denotes | for |
| T5332 | 961-970 | JJ | denotes | essential |
| T5331 | 957-960 | VB | denotes | are |
| T5330 | 951-956 | WDT | denotes | which |
| T5329 | 949-950 | -COMMA- | denotes | , |
| T5328 | 942-949 | NN | denotes | cIAP1/2 |
| T5327 | 938-941 | CC | denotes | and |
| T5326 | 932-937 | NN | denotes | TRAF2 |
| T5325 | 924-931 | VB | denotes | attract |
| T5324 | 921-923 | TO | denotes | to |
| T5323 | 916-920 | RB | denotes | also |
| T5322 | 912-915 | CC | denotes | but |
| T5321 | 910-911 | -COMMA- | denotes | , |
| T5320 | 902-910 | NN | denotes | receptor |
| T5319 | 898-901 | DT | denotes | the |
| T5318 | 895-897 | TO | denotes | to |
| T5317 | 892-894 | PRP | denotes | it |
| T5316 | 881-891 | VB | denotes | recruiting |
| T5315 | 878-880 | IN | denotes | by |
| T5314 | 870-877 | NN | denotes | complex |
| T5313 | 865-869 | DT | denotes | this |
| T5312 | 860-864 | IN | denotes | from |
| T5311 | 854-859 | NN | denotes | TRAF3 |
| T5310 | 847-853 | VB | denotes | remove |
| T5309 | 844-846 | TO | denotes | to |
| T5308 | 839-843 | RB | denotes | only |
| T5307 | 835-838 | RB | denotes | not |
| T5306 | 829-834 | VB | denotes | shown |
| T5305 | 824-828 | VB | denotes | been |
| T5304 | 820-823 | VB | denotes | has |
| T5303 | 811-819 | NN | denotes | ligation |
| T5302 | 802-810 | NN | denotes | Receptor |
| T5301 | 790-800 | NN | denotes | proteasome |
| T5300 | 786-789 | DT | denotes | the |
| T5299 | 783-785 | IN | denotes | by |
| T5298 | 771-782 | NN | denotes | degradation |
| T5297 | 760-770 | JJ | denotes | continuous |
| T5296 | 756-759 | PRP-DOLLAR- | denotes | its |
| T5295 | 753-755 | TO | denotes | to |
| T5294 | 745-752 | VB | denotes | leading |
| T5293 | 743-744 | -COMMA- | denotes | , |
| T5292 | 740-743 | NN | denotes | NIK |
| T5291 | 718-739 | VB | denotes | K48-polyubiquitinates |
| T5290 | 712-717 | WDT | denotes | which |
| T5289 | 710-711 | -COMMA- | denotes | , |
| T5288 | 703-710 | NN | denotes | cIAP1/2 |
| T5287 | 699-702 | CC | denotes | and |
| T5286 | 697-698 | -COMMA- | denotes | , |
| T5285 | 692-697 | NN | denotes | TRAF3 |
| T5284 | 690-691 | -COMMA- | denotes | , |
| T5283 | 685-690 | NN | denotes | TRAF2 |
| T5282 | 680-684 | IN | denotes | with |
| T5281 | 672-679 | NN | denotes | complex |
| T5280 | 660-671 | JJ | denotes | cytoplasmic |
| T5279 | 658-659 | DT | denotes | a |
| T5278 | 655-657 | IN | denotes | in |
| T5277 | 648-654 | VB | denotes | occurs |
| T5276 | 644-647 | NN | denotes | NIK |
| T5275 | 642-643 | -COMMA- | denotes | , |
| T5274 | 637-642 | NN | denotes | cells |
| T5273 | 624-636 | JJ | denotes | unstimulated |
| T5272 | 621-623 | IN | denotes | In |
| T5271 | 614-619 | NN | denotes | types |
| T5270 | 609-613 | NN | denotes | cell |
| T5269 | 604-608 | JJ | denotes | most |
| T5268 | 601-603 | IN | denotes | in |
| T5267 | 594-600 | NN | denotes | levels |
| T5266 | 590-593 | JJ | denotes | low |
| T5265 | 580-589 | RB | denotes | extremely |
| T5264 | 577-579 | IN | denotes | at |
| T5263 | 569-576 | JJ | denotes | present |
| T5262 | 566-568 | VB | denotes | is |
| T5261 | 562-565 | CC | denotes | and |
| T5260 | 556-561 | NN | denotes | level |
| T5259 | 537-555 | JJ | denotes | post-translational |
| T5258 | 533-536 | DT | denotes | the |
| T5257 | 530-532 | IN | denotes | at |
| T5256 | 520-529 | VB | denotes | regulated |
| T5255 | 506-519 | RB | denotes | predominantly |
| T5254 | 503-505 | VB | denotes | is |
| T5253 | 499-502 | NN | denotes | NIK |
| T5252 | 496-497 | -RRB- | denotes | ) |
| T5251 | 493-496 | NN | denotes | NIK |
| T5250 | 492-493 | -LRB- | denotes | ( |
| T5249 | 485-491 | NN | denotes | kinase |
| T5248 | 476-484 | VB | denotes | inducing |
| T5247 | 470-475 | NN | denotes | NF-κB |
| T5246 | 467-469 | IN | denotes | by |
| T5245 | 451-466 | NN | denotes | phosphorylation |
| T5244 | 446-450 | IN | denotes | upon |
| T5243 | 436-445 | VB | denotes | activated |
| T5242 | 433-435 | VB | denotes | is |
| T5241 | 427-432 | WDT | denotes | which |
| T5240 | 425-426 | -COMMA- | denotes | , |
| T5239 | 421-425 | NN | denotes | IKK1 |
| T5238 | 418-420 | IN | denotes | on |
| T5237 | 408-417 | JJ | denotes | dependent |
| T5236 | 399-407 | RB | denotes | strictly |
| T5235 | 396-398 | VB | denotes | is |
| T5234 | 388-395 | NN | denotes | pathway |
| T5233 | 382-387 | NN | denotes | NF-κB |
| T5232 | 369-381 | JJ | denotes | noncanonical |
| T5231 | 365-368 | DT | denotes | The |
| T5230 | 363-364 | -RRB- | denotes | ] |
| T5229 | 361-363 | CD | denotes | 27 |
| T5228 | 360-361 | -LRB- | denotes | [ |
| T5227 | 341-359 | NN | denotes | osteoclastogenesis |
| T5226 | 337-340 | CC | denotes | and |
| T5225 | 335-336 | -COMMA- | denotes | , |
| T5224 | 324-335 | NN | denotes | development |
| T5223 | 318-323 | NN | denotes | organ |
| T5222 | 309-317 | JJ | denotes | lymphoid |
| T5221 | 299-308 | JJ | denotes | secondary |
| T5220 | 297-298 | -COMMA- | denotes | , |
| T5219 | 286-297 | NN | denotes | development |
| T5218 | 279-285 | NN | denotes | B-cell |
| T5217 | 271-278 | VB | denotes | control |
| T5216 | 266-270 | WDT | denotes | that |
| T5215 | 260-265 | NN | denotes | genes |
| T5214 | 253-259 | NN | denotes | target |
| T5213 | 250-252 | IN | denotes | of |
| T5212 | 246-249 | NN | denotes | set |
| T5211 | 237-245 | JJ | denotes | distinct |
| T5210 | 235-236 | DT | denotes | a |
| T5209 | 225-234 | VB | denotes | regulates |
| T5208 | 217-224 | NN | denotes | subunit |
| T5207 | 211-216 | NN | denotes | NF-κB |
| T5206 | 206-210 | NN | denotes | RelB |
| T5205 | 202-205 | DT | denotes | the |
| T5204 | 197-201 | IN | denotes | with |
| T5203 | 188-196 | RB | denotes | together |
| T5202 | 182-187 | WDT | denotes | which |
| T5201 | 180-181 | -COMMA- | denotes | , |
| T5200 | 177-180 | NN | denotes | p52 |
| T5199 | 174-176 | TO | denotes | to |
| T5198 | 163-173 | NN | denotes | proteasome |
| T5197 | 159-162 | DT | denotes | the |
| T5196 | 156-158 | IN | denotes | by |
| T5195 | 146-155 | VB | denotes | processed |
| T5194 | 143-145 | VB | denotes | is |
| T5193 | 138-142 | NN | denotes | p100 |
| T5192 | 136-137 | -COMMA- | denotes | , |
| T5191 | 129-136 | NN | denotes | pathway |
| T5190 | 124-128 | DT | denotes | this |
| T5189 | 121-123 | IN | denotes | In |
| T5188 | 118-119 | -RRB- | denotes | ) |
| T5187 | 117-118 | CD | denotes | 2 |
| T5186 | 110-116 | NN | denotes | Figure |
| T5185 | 109-110 | -LRB- | denotes | ( |
| T5184 | 104-108 | NN | denotes | RANK |
| T5183 | 100-103 | CC | denotes | and |
| T5182 | 98-99 | -COMMA- | denotes | , |
| T5181 | 94-98 | NN | denotes | CD40 |
| T5180 | 92-93 | -COMMA- | denotes | , |
| T5179 | 84-92 | NN | denotes | receptor |
| T5178 | 79-83 | NN | denotes | BAFF |
| T5177 | 77-78 | -COMMA- | denotes | , |
| T5176 | 69-77 | NN | denotes | receptor |
| T5175 | 67-68 | NN | denotes | β |
| T5174 | 55-66 | NN | denotes | lymphotoxin |
| T5173 | 51-54 | DT | denotes | the |
| T5172 | 48-50 | IN | denotes | by |
| T5171 | 38-47 | VB | denotes | activated |
| T5170 | 35-37 | VB | denotes | be |
| T5169 | 31-34 | MD | denotes | can |
| T5168 | 23-30 | NN | denotes | pathway |
| T5167 | 17-22 | NN | denotes | NF-κB |
| T5166 | 4-16 | JJ | denotes | noncanonical |
| T5165 | 0-3 | DT | denotes | The |
| R3631 | T5168 | T5165 | arg1Of | pathway,The |
| R3632 | T5168 | T5166 | arg1Of | pathway,noncanonical |
| R3633 | T5168 | T5167 | arg1Of | pathway,NF-κB |
| R3634 | T5168 | T5169 | arg1Of | pathway,can |
| R3635 | T5168 | T5170 | arg1Of | pathway,be |
| R3636 | T5168 | T5171 | arg2Of | pathway,activated |
| R3637 | T5171 | T5169 | arg2Of | activated,can |
| R3638 | T5171 | T5170 | arg2Of | activated,be |
| R3639 | T5171 | T5172 | arg1Of | activated,by |
| R3640 | T5176 | T5173 | arg1Of | receptor,the |
| R3641 | T5176 | T5174 | arg1Of | receptor,lymphotoxin |
| R3642 | T5176 | T5175 | arg1Of | receptor,β |
| R3643 | T5176 | T5177 | arg1Of | receptor,"," |
| R3644 | T5176 | T5180 | arg1Of | receptor,"," |
| R3645 | T5179 | T5177 | arg2Of | receptor,"," |
| R3646 | T5179 | T5178 | arg1Of | receptor,BAFF |
| R3647 | T5180 | T5183 | arg1Of | ",",and |
| R3648 | T5181 | T5180 | arg2Of | CD40,"," |
| R3649 | T5183 | T5172 | arg2Of | and,by |
| R3650 | T5183 | T5182 | arg1Of | and,"," |
| R3651 | T5184 | T5183 | arg2Of | RANK,and |
| R3652 | T5184 | T5185 | arg1Of | RANK,( |
| R3653 | T5186 | T5185 | arg2Of | Figure,( |
| R3654 | T5186 | T5187 | arg1Of | Figure,2 |
| R3655 | T5188 | T5185 | arg3Of | ),( |
| R3656 | T5191 | T5189 | arg2Of | pathway,In |
| R3657 | T5191 | T5190 | arg1Of | pathway,this |
| R3658 | T5193 | T5194 | arg1Of | p100,is |
| R3659 | T5193 | T5195 | arg2Of | p100,processed |
| R3660 | T5195 | T5194 | arg2Of | processed,is |
| R3661 | T5195 | T5226 | arg1Of | processed,and |
| R3662 | T5198 | T5199 | arg1Of | proteasome,to |
| R3663 | T5198 | T5201 | arg1Of | proteasome,"," |
| R3664 | T5198 | T5202 | arg1Of | proteasome,which |
| R3665 | T5198 | T5209 | arg1Of | proteasome,regulates |
| R3666 | T5198 | T5220 | arg1Of | proteasome,"," |
| R3667 | T5200 | T5199 | arg2Of | p52,to |
| R3668 | T5203 | T5204 | arg1Of | together,with |
| R3669 | T5208 | T5204 | arg2Of | subunit,with |
| R3670 | T5208 | T5205 | arg1Of | subunit,the |
| R3671 | T5208 | T5206 | arg1Of | subunit,RelB |
| R3672 | T5208 | T5207 | arg1Of | subunit,NF-κB |
| R3673 | T5209 | T5203 | arg1Of | regulates,together |
| R3674 | T5212 | T5209 | arg2Of | set,regulates |
| R3675 | T5212 | T5210 | arg1Of | set,a |
| R3676 | T5212 | T5211 | arg1Of | set,distinct |
| R3677 | T5212 | T5213 | arg1Of | set,of |
| R3678 | T5215 | T5213 | arg2Of | genes,of |
| R3679 | T5215 | T5214 | arg1Of | genes,target |
| R3680 | T5215 | T5216 | arg1Of | genes,that |
| R3681 | T5215 | T5217 | arg1Of | genes,control |
| R3682 | T5219 | T5217 | arg2Of | development,control |
| R3683 | T5219 | T5218 | arg1Of | development,B-cell |
| R3684 | T5220 | T5195 | arg1Of | ",",processed |
| R3685 | T5220 | T5196 | arg2Of | ",",by |
| R3686 | T5220 | T5197 | arg1Of | ",",the |
| R3687 | T5224 | T5220 | arg2Of | development,"," |
| R3688 | T5224 | T5221 | arg1Of | development,secondary |
| R3689 | T5224 | T5222 | arg1Of | development,lymphoid |
| R3690 | T5224 | T5223 | arg1Of | development,organ |
| R3691 | T5226 | T5189 | arg1Of | and,In |
| R3692 | T5226 | T5192 | arg1Of | and,"," |
| R3693 | T5226 | T5225 | arg1Of | and,"," |
| R3694 | T5229 | T5228 | arg2Of | 27,[ |
| R3695 | T5230 | T5228 | arg3Of | ],[ |
| R3696 | T5232 | T5231 | arg1Of | noncanonical,The |
| R3697 | T5234 | T5227 | arg1Of | pathway,osteoclastogenesis |
| R3698 | T5234 | T5228 | arg1Of | pathway,[ |
| R3699 | T5234 | T5232 | arg1Of | pathway,noncanonical |
| R3700 | T5234 | T5233 | arg1Of | pathway,NF-κB |
| R3701 | T5234 | T5235 | arg1Of | pathway,is |
| R3702 | T5234 | T5237 | arg1Of | pathway,dependent |
| R3703 | T5235 | T5226 | arg2Of | is,and |
| R3704 | T5237 | T5235 | arg2Of | dependent,is |
| R3705 | T5237 | T5236 | arg1Of | dependent,strictly |
| R3706 | T5237 | T5238 | arg1Of | dependent,on |
| R3707 | T5239 | T5238 | arg2Of | IKK1,on |
| R3708 | T5239 | T5240 | arg1Of | IKK1,"," |
| R3709 | T5239 | T5241 | arg1Of | IKK1,which |
| R3710 | T5239 | T5242 | arg1Of | IKK1,is |
| R3711 | T5239 | T5243 | arg2Of | IKK1,activated |
| R3712 | T5243 | T5242 | arg2Of | activated,is |
| R3713 | T5243 | T5244 | arg1Of | activated,upon |
| R3714 | T5245 | T5244 | arg2Of | phosphorylation,upon |
| R3715 | T5245 | T5246 | arg1Of | phosphorylation,by |
| R3716 | T5247 | T5246 | arg2Of | NF-κB,by |
| R3717 | T5247 | T5248 | arg1Of | NF-κB,inducing |
| R3718 | T5249 | T5248 | arg2Of | kinase,inducing |
| R3719 | T5249 | T5250 | arg1Of | kinase,( |
| R3720 | T5251 | T5250 | arg2Of | NIK,( |
| R3721 | T5252 | T5250 | arg3Of | ),( |
| R3722 | T5253 | T5254 | arg1Of | NIK,is |
| R3723 | T5253 | T5256 | arg2Of | NIK,regulated |
| R3724 | T5253 | T5262 | arg1Of | NIK,is |
| R3725 | T5253 | T5263 | arg1Of | NIK,present |
| R3726 | T5256 | T5254 | arg2Of | regulated,is |
| R3727 | T5256 | T5255 | arg1Of | regulated,predominantly |
| R3728 | T5256 | T5257 | arg1Of | regulated,at |
| R3729 | T5256 | T5261 | arg1Of | regulated,and |
| R3730 | T5260 | T5257 | arg2Of | level,at |
| R3731 | T5260 | T5258 | arg1Of | level,the |
| R3732 | T5260 | T5259 | arg1Of | level,post-translational |
| R3733 | T5262 | T5261 | arg2Of | is,and |
| R3734 | T5263 | T5262 | arg2Of | present,is |
| R3735 | T5263 | T5264 | arg1Of | present,at |
| R3736 | T5263 | T5268 | arg1Of | present,in |
| R3737 | T5266 | T5265 | arg1Of | low,extremely |
| R3738 | T5267 | T5264 | arg2Of | levels,at |
| R3739 | T5267 | T5266 | arg1Of | levels,low |
| R3740 | T5271 | T5268 | arg2Of | types,in |
| R3741 | T5271 | T5269 | arg1Of | types,most |
| R3742 | T5271 | T5270 | arg1Of | types,cell |
| R3743 | T5274 | T5272 | arg2Of | cells,In |
| R3744 | T5274 | T5273 | arg1Of | cells,unstimulated |
| R3745 | T5276 | T5277 | arg1Of | NIK,occurs |
| R3746 | T5277 | T5272 | arg1Of | occurs,In |
| R3747 | T5277 | T5275 | arg1Of | occurs,"," |
| R3748 | T5277 | T5278 | arg1Of | occurs,in |
| R3749 | T5277 | T5293 | arg1Of | occurs,"," |
| R3750 | T5277 | T5294 | modOf | occurs,leading |
| R3751 | T5281 | T5278 | arg2Of | complex,in |
| R3752 | T5281 | T5279 | arg1Of | complex,a |
| R3753 | T5281 | T5280 | arg1Of | complex,cytoplasmic |
| R3754 | T5281 | T5282 | arg1Of | complex,with |
| R3755 | T5283 | T5284 | arg1Of | TRAF2,"," |
| R3756 | T5284 | T5287 | arg1Of | ",",and |
| R3757 | T5285 | T5284 | arg2Of | TRAF3,"," |
| R3758 | T5287 | T5282 | arg2Of | and,with |
| R3759 | T5287 | T5286 | arg1Of | and,"," |
| R3760 | T5287 | T5289 | arg1Of | and,"," |
| R3761 | T5287 | T5290 | arg1Of | and,which |
| R3762 | T5287 | T5291 | arg1Of | and,K48-polyubiquitinates |
| R3763 | T5288 | T5287 | arg2Of | cIAP1/2,and |
| R3764 | T5292 | T5291 | arg2Of | NIK,K48-polyubiquitinates |
| R3765 | T5294 | T5295 | arg1Of | leading,to |
| R3766 | T5298 | T5295 | arg2Of | degradation,to |
| R3767 | T5298 | T5296 | arg1Of | degradation,its |
| R3768 | T5298 | T5297 | arg1Of | degradation,continuous |
| R3769 | T5298 | T5299 | arg1Of | degradation,by |
| R3770 | T5301 | T5299 | arg2Of | proteasome,by |
| R3771 | T5301 | T5300 | arg1Of | proteasome,the |
| R3772 | T5303 | T5302 | arg1Of | ligation,Receptor |
| R3773 | T5303 | T5304 | arg1Of | ligation,has |
| R3774 | T5303 | T5305 | arg1Of | ligation,been |
| R3775 | T5303 | T5306 | arg2Of | ligation,shown |
| R3776 | T5306 | T5304 | arg2Of | shown,has |
| R3777 | T5306 | T5305 | arg2Of | shown,been |
| R3778 | T5306 | T5309 | modOf | shown,to |
| R3779 | T5306 | T5324 | modOf | shown,to |
| R3780 | T5308 | T5307 | arg1Of | only,not |
| R3781 | T5310 | T5309 | arg1Of | remove,to |
| R3782 | T5310 | T5315 | arg1Of | remove,by |
| R3783 | T5310 | T5322 | arg1Of | remove,but |
| R3784 | T5311 | T5310 | arg2Of | TRAF3,remove |
| R3785 | T5311 | T5312 | arg1Of | TRAF3,from |
| R3786 | T5314 | T5312 | arg2Of | complex,from |
| R3787 | T5314 | T5313 | arg1Of | complex,this |
| R3788 | T5316 | T5315 | arg2Of | recruiting,by |
| R3789 | T5316 | T5318 | arg1Of | recruiting,to |
| R3790 | T5317 | T5316 | arg2Of | it,recruiting |
| R3791 | T5320 | T5318 | arg2Of | receptor,to |
| R3792 | T5320 | T5319 | arg1Of | receptor,the |
| R3793 | T5322 | T5308 | arg1Of | but,only |
| R3794 | T5322 | T5321 | arg1Of | but,"," |
| R3795 | T5322 | T5323 | arg1Of | but,also |
| R3796 | T5325 | T5322 | arg2Of | attract,but |
| R3797 | T5325 | T5324 | arg1Of | attract,to |
| R3798 | T5326 | T5327 | arg1Of | TRAF2,and |
| R3799 | T5327 | T5325 | arg2Of | and,attract |
| R3800 | T5327 | T5329 | arg1Of | and,"," |
| R3801 | T5327 | T5330 | arg1Of | and,which |
| R3802 | T5327 | T5331 | arg1Of | and,are |
| R3803 | T5327 | T5332 | arg1Of | and,essential |
| R3804 | T5328 | T5327 | arg2Of | cIAP1/2,and |
| R3805 | T5332 | T5331 | arg2Of | essential,are |
| R3806 | T5332 | T5333 | arg1Of | essential,for |
| R3807 | T5336 | T5333 | arg2Of | degradation,for |
| R3808 | T5336 | T5334 | arg1Of | degradation,subsequent |
| R3809 | T5336 | T5335 | arg1Of | degradation,TRAF3 |
| R3810 | T5338 | T5337 | arg1Of | this,All |
| R3811 | T5338 | T5339 | arg1Of | this,contributes |
| R3812 | T5339 | T5340 | arg1Of | contributes,to |
| R3813 | T5341 | T5340 | arg2Of | releasing,to |
| R3814 | T5341 | T5343 | arg1Of | releasing,from |
| R3815 | T5341 | T5347 | arg1Of | releasing,"," |
| R3816 | T5341 | T5348 | modOf | releasing,resulting |
| R3817 | T5341 | T5355 | arg1Of | releasing,[ |
| R3818 | T5341 | T5358 | arg1Of | releasing,( |
| R3819 | T5342 | T5341 | arg2Of | NIK,releasing |
| R3820 | T5346 | T5343 | arg2Of | degradation,from |
| R3821 | T5346 | T5344 | arg1Of | degradation,its |
| R3822 | T5346 | T5345 | arg1Of | degradation,constitutive |
| R3823 | T5348 | T5349 | arg1Of | resulting,in |
| R3824 | T5351 | T5350 | arg1Of | accumulation,NIK |
| R3825 | T5351 | T5352 | arg1Of | accumulation,and |
| R3826 | T5352 | T5349 | arg2Of | and,in |
| R3829 | T5354 | T5352 | arg2Of | phosphorylation,and |
| R3831 | T5354 | T5353 | arg1Of | phosphorylation,IKK1 |
| R3834 | T5356 | T5355 | arg2Of | "28,29",[ |
| R3836 | T5357 | T5355 | arg3Of | ],[ |
| R3838 | T5359 | T5358 | arg2Of | Figure,( |
| R3847 | T5359 | T5360 | arg1Of | Figure,2 |
| R3849 | T5361 | T5358 | arg3Of | ),( |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4236 | 318-323 | http://purl.obolibrary.org/obo/UBERON_0000062 | denotes | organ |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5600 | 1091-1094 | http://purl.obolibrary.org/obo/GO_0004704 | denotes | NIK |
| T5599 | 1039-1042 | http://purl.obolibrary.org/obo/GO_0004704 | denotes | NIK |
| T5598 | 740-743 | http://purl.obolibrary.org/obo/GO_0004704 | denotes | NIK |
| T5597 | 644-647 | http://purl.obolibrary.org/obo/GO_0004704 | denotes | NIK |
| T5596 | 499-502 | http://purl.obolibrary.org/obo/GO_0004704 | denotes | NIK |
| T5595 | 493-496 | http://purl.obolibrary.org/obo/GO_0004704 | denotes | NIK |
| T5594 | 318-335 | http://purl.obolibrary.org/obo/GO_0048513 | denotes | organ development |
| T5593 | 324-335 | http://purl.obolibrary.org/obo/GO_0032502 | denotes | development |
| T5592 | 286-297 | http://purl.obolibrary.org/obo/GO_0032502 | denotes | development |
| T5591 | 281-297 | http://purl.obolibrary.org/obo/GO_0048468 | denotes | cell development |
| T5590 | 279-297 | http://purl.obolibrary.org/obo/GO_0002329 | denotes | B-cell development |
| T5589 | 279-297 | http://purl.obolibrary.org/obo/GO_0002328 | denotes | B-cell development |
| T5526 | 771-800 | http://purl.obolibrary.org/obo/GO_1903009 | denotes | degradation by the proteasome |
| T5524 | 1065-1076 | http://purl.obolibrary.org/obo/GO_0009056 | denotes | degradation |
| T5523 | 992-1003 | http://purl.obolibrary.org/obo/GO_0009056 | denotes | degradation |
| T5522 | 771-782 | http://purl.obolibrary.org/obo/GO_0009056 | denotes | degradation |
| T5520 | 1117-1132 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
| T5519 | 451-466 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5679 | 1091-1094 | http://purl.obolibrary.org/obo/GO_0004704 | denotes | NIK |
| T5678 | 1039-1042 | http://purl.obolibrary.org/obo/GO_0004704 | denotes | NIK |
| T5677 | 740-743 | http://purl.obolibrary.org/obo/GO_0004704 | denotes | NIK |
| T5676 | 644-647 | http://purl.obolibrary.org/obo/GO_0004704 | denotes | NIK |
| T5675 | 499-502 | http://purl.obolibrary.org/obo/GO_0004704 | denotes | NIK |
| T5674 | 493-496 | http://purl.obolibrary.org/obo/GO_0004704 | denotes | NIK |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5693 | 637-642 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T5692 | 609-613 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T5691 | 281-285 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T5688 | 790-800 | http://purl.obolibrary.org/obo/GO_0000502 | denotes | proteasome |
| T5687 | 163-173 | http://purl.obolibrary.org/obo/GO_0000502 | denotes | proteasome |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4261 | 1005-1152 | Sentence | denotes | All this contributes to releasing NIK from its constitutive degradation, resulting in NIK accumulation and IKK1 phosphorylation [28,29] (Figure 2). |
| T4260 | 802-1004 | Sentence | denotes | Receptor ligation has been shown not only to remove TRAF3 from this complex by recruiting it to the receptor, but also to attract TRAF2 and cIAP1/2, which are essential for subsequent TRAF3 degradation. |
| T4259 | 621-801 | Sentence | denotes | In unstimulated cells, NIK occurs in a cytoplasmic complex with TRAF2, TRAF3, and cIAP1/2, which K48-polyubiquitinates NIK, leading to its continuous degradation by the proteasome. |
| T4258 | 499-620 | Sentence | denotes | NIK is predominantly regulated at the post-translational level and is present at extremely low levels in most cell types. |
| T4257 | 121-498 | Sentence | denotes | In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK). |
| T4256 | 0-120 | Sentence | denotes | The noncanonical NF-κB pathway can be activated by the lymphotoxin β receptor, BAFF receptor, CD40, and RANK (Figure 2). |
| T68 | 0-120 | Sentence | denotes | The noncanonical NF-κB pathway can be activated by the lymphotoxin β receptor, BAFF receptor, CD40, and RANK (Figure 2). |
| T69 | 121-498 | Sentence | denotes | In this pathway, p100 is processed by the proteasome to p52, which together with the RelB NF-κB subunit regulates a distinct set of target genes that control B-cell development, secondary lymphoid organ development, and osteoclastogenesis [27] The noncanonical NF-κB pathway is strictly dependent on IKK1, which is activated upon phosphorylation by NF-κB inducing kinase (NIK). |
| T70 | 499-620 | Sentence | denotes | NIK is predominantly regulated at the post-translational level and is present at extremely low levels in most cell types. |
| T71 | 621-801 | Sentence | denotes | In unstimulated cells, NIK occurs in a cytoplasmic complex with TRAF2, TRAF3, and cIAP1/2, which K48-polyubiquitinates NIK, leading to its continuous degradation by the proteasome. |
| T72 | 802-1004 | Sentence | denotes | Receptor ligation has been shown not only to remove TRAF3 from this complex by recruiting it to the receptor, but also to attract TRAF2 and cIAP1/2, which are essential for subsequent TRAF3 degradation. |
| T73 | 1005-1152 | Sentence | denotes | All this contributes to releasing NIK from its constitutive degradation, resulting in NIK accumulation and IKK1 phosphorylation [28,29] (Figure 2). |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5881 | 1112-1116 | Protein | denotes | IKK1 |
| T5880 | 1091-1094 | Protein | denotes | NIK |
| T5879 | 1039-1042 | Protein | denotes | NIK |
| T5878 | 986-991 | Protein | denotes | TRAF3 |
| T5877 | 948-949 | Protein | denotes | 2 |
| T5876 | 942-947 | Protein | denotes | cIAP1 |
| T5875 | 932-937 | Protein | denotes | TRAF2 |
| T5874 | 854-859 | Protein | denotes | TRAF3 |
| T5873 | 740-743 | Protein | denotes | NIK |
| T5872 | 709-710 | Protein | denotes | 2 |
| T5871 | 703-708 | Protein | denotes | cIAP1 |
| T5870 | 692-697 | Protein | denotes | TRAF3 |
| T5869 | 685-690 | Protein | denotes | TRAF2 |
| T5868 | 644-647 | Protein | denotes | NIK |
| T5867 | 499-502 | Protein | denotes | NIK |
| T5866 | 493-496 | Protein | denotes | NIK |
| T5865 | 470-491 | Protein | denotes | NF-κB inducing kinase |
| T5864 | 421-425 | Protein | denotes | IKK1 |
| T5863 | 206-210 | Protein | denotes | RelB |
| T5862 | 177-180 | Protein | denotes | p52 |
| T5861 | 138-142 | Protein | denotes | p100 |
| T5860 | 104-108 | Protein | denotes | RANK |
| T5859 | 94-98 | Protein | denotes | CD40 |
| T5858 | 79-92 | Protein | denotes | BAFF receptor |
| T5857 | 55-77 | Protein | denotes | lymphotoxin β receptor |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7962 | 1117-1132 | Phosphorylation | denotes | phosphorylation |
| T7961 | 1029-1038 | Localization | denotes | releasing |
| T7960 | 1065-1076 | Protein_catabolism | denotes | degradation |
| T7959 | 1078-1087 | Positive_regulation | denotes | resulting |
| T7958 | 1095-1107 | Positive_regulation | denotes | accumulation |
| T7957 | 961-970 | Positive_regulation | denotes | essential |
| T7956 | 847-853 | Negative_regulation | denotes | remove |
| T7955 | 992-1003 | Protein_catabolism | denotes | degradation |
| T7954 | 924-931 | Binding | denotes | attract |
| T7953 | 672-679 | Binding | denotes | complex |
| T7952 | 718-739 | Positive_regulation | denotes | K48-polyubiquitinates |
| T7951 | 745-752 | Positive_regulation | denotes | leading |
| T7950 | 771-782 | Protein_catabolism | denotes | degradation |
| T7949 | 520-529 | Regulation | denotes | regulated |
| T7948 | 436-445 | Positive_regulation | denotes | activated |
| T7947 | 225-234 | Regulation | denotes | regulates |
| T7910 | 1112-1116 | Protein | denotes | IKK1 |
| T7909 | 1091-1094 | Protein | denotes | NIK |
| T7908 | 1039-1042 | Protein | denotes | NIK |
| T7907 | 986-991 | Protein | denotes | TRAF3 |
| T7906 | 948-949 | Protein | denotes | 2 |
| T7905 | 942-947 | Protein | denotes | cIAP1 |
| T7904 | 932-937 | Protein | denotes | TRAF2 |
| T7903 | 854-859 | Protein | denotes | TRAF3 |
| T7902 | 709-710 | Protein | denotes | 2 |
| T7901 | 703-708 | Protein | denotes | cIAP1 |
| T7900 | 692-697 | Protein | denotes | TRAF3 |
| T7899 | 685-690 | Protein | denotes | TRAF2 |
| T7898 | 644-647 | Protein | denotes | NIK |
| T7897 | 740-743 | Protein | denotes | NIK |
| T7896 | 499-502 | Protein | denotes | NIK |
| T7895 | 493-496 | Protein | denotes | NIK |
| T7894 | 470-491 | Protein | denotes | NF-κB inducing kinase |
| T7893 | 421-425 | Protein | denotes | IKK1 |
| T7892 | 206-210 | Protein | denotes | RelB |
| T7891 | 177-180 | Protein | denotes | p52 |
| T7890 | 138-142 | Protein | denotes | p100 |
| T7889 | 104-108 | Protein | denotes | RANK |
| T7888 | 94-98 | Protein | denotes | CD40 |
| T7887 | 79-92 | Protein | denotes | BAFF receptor |
| T7886 | 55-77 | Protein | denotes | lymphotoxin β receptor |
| R5492 | T7906 | T7954 | themeOf | 2,attract |
| R5494 | T7907 | T7955 | themeOf | TRAF3,degradation |
| R5496 | T7908 | T7960 | themeOf | NIK,degradation |
| R5548 | T7950 | T7951 | themeOf | degradation,leading |
| R5450 | T7955 | T7957 | themeOf | degradation,essential |
| R5452 | T7958 | T7959 | themeOf | accumulation,resulting |
| R5454 | T7962 | T7959 | themeOf | phosphorylation,resulting |
| R5470 | T7892 | T7947 | themeOf | RelB,regulates |
| R5476 | T7893 | T7948 | themeOf | IKK1,activated |
| R5477 | T7893 | T7948 | themeOf | IKK1,activated |
| R5478 | T7894 | T7948 | causeOf | NF-κB inducing kinase,activated |
| R5480 | T7895 | T7948 | causeOf | NIK,activated |
| R5481 | T7896 | T7949 | themeOf | NIK,regulated |
| R5482 | T7897 | T7952 | themeOf | NIK,K48-polyubiquitinates |
| R5483 | T7897 | T7950 | themeOf | NIK,degradation |
| R5484 | T7901 | T7953 | themeOf | cIAP1,complex |
| R5485 | T7903 | T7956 | themeOf | TRAF3,remove |
| R5486 | T7904 | T7954 | themeOf | TRAF2,attract |
| R5488 | T7905 | T7954 | themeOf | cIAP1,attract |
| R5490 | T7905 | T7957 | themeOf | cIAP1,essential |
| R5498 | T7908 | T7961 | themeOf | NIK,releasing |
| R5499 | T7909 | T7958 | themeOf | NIK,accumulation |
| R5503 | T7910 | T7962 | themeOf | IKK1,phosphorylation |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7079 | 1117-1132 | Phosphorylation | denotes | phosphorylation |
| T7078 | 1095-1107 | Positive_regulation | denotes | accumulation |
| T7077 | 1065-1076 | Protein_catabolism | denotes | degradation |
| T7076 | 1078-1087 | Positive_regulation | denotes | resulting |
| T7075 | 1029-1038 | Negative_regulation | denotes | releasing |
| T7074 | 847-853 | Negative_regulation | denotes | remove |
| T7073 | 881-891 | Binding | denotes | recruiting |
| T7072 | 924-931 | Binding | denotes | attract |
| T7071 | 961-970 | Positive_regulation | denotes | essential |
| T7070 | 992-1003 | Protein_catabolism | denotes | degradation |
| T7069 | 771-782 | Protein_catabolism | denotes | degradation |
| T7068 | 520-529 | Regulation | denotes | regulated |
| T7067 | 436-445 | Positive_regulation | denotes | activated |
| T7011 | 94-98 | Protein | denotes | CD40 |
| T7010 | 79-92 | Protein | denotes | BAFF receptor |
| T7009 | 55-77 | Protein | denotes | lymphotoxin β receptor |
| T7024 | 703-708 | Protein | denotes | cIAP1 |
| T7023 | 692-697 | Protein | denotes | TRAF3 |
| T7022 | 685-690 | Protein | denotes | TRAF2 |
| T7021 | 644-647 | Protein | denotes | NIK |
| T7020 | 740-743 | Protein | denotes | NIK |
| T7019 | 499-502 | Protein | denotes | NIK |
| T7018 | 493-496 | Protein | denotes | NIK |
| T7017 | 470-491 | Protein | denotes | NF-κB inducing kinase |
| T7016 | 421-425 | Protein | denotes | IKK1 |
| T7015 | 206-210 | Protein | denotes | RelB |
| T7014 | 177-180 | Protein | denotes | p52 |
| T7013 | 138-142 | Protein | denotes | p100 |
| T7012 | 104-108 | Protein | denotes | RANK |
| T7033 | 1112-1116 | Protein | denotes | IKK1 |
| T7032 | 1091-1094 | Protein | denotes | NIK |
| T7031 | 1039-1042 | Protein | denotes | NIK |
| T7030 | 986-991 | Protein | denotes | TRAF3 |
| T7029 | 948-949 | Protein | denotes | 2 |
| T7028 | 942-947 | Protein | denotes | cIAP1 |
| T7027 | 932-937 | Protein | denotes | TRAF2 |
| T7026 | 854-859 | Protein | denotes | TRAF3 |
| T7025 | 709-710 | Protein | denotes | 2 |
| R4952 | T7016 | T7067 | causeOf | IKK1,activated |
| R4954 | T7017 | T7067 | themeOf | NF-κB inducing kinase,activated |
| R4956 | T7019 | T7068 | themeOf | NIK,regulated |
| R4959 | T7025 | T7069 | themeOf | 2,degradation |
| R4960 | T7026 | T7074 | themeOf | TRAF3,remove |
| R4961 | T7026 | T7073 | themeOf | TRAF3,recruiting |
| R4962 | T7027 | T7072 | themeOf | TRAF2,attract |
| R4963 | T7028 | T7072 | themeOf | cIAP1,attract |
| R4964 | T7029 | T7072 | themeOf | 2,attract |
| R4965 | T7030 | T7070 | themeOf | TRAF3,degradation |
| R4966 | T7031 | T7077 | themeOf | NIK,degradation |
| R4967 | T7031 | T7075 | themeOf | NIK,releasing |
| R4968 | T7032 | T7078 | themeOf | NIK,accumulation |
| R4969 | T7033 | T7079 | themeOf | IKK1,phosphorylation |
| R5052 | T7070 | T7071 | themeOf | degradation,essential |
| R5067 | T7077 | T7075 | themeOf | degradation,releasing |
| R5072 | T7078 | T7076 | themeOf | accumulation,resulting |
| R5075 | T7079 | T7076 | themeOf | phosphorylation,resulting |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8203 | 971-1003 | Protein_catabolism | denotes | for subsequent TRAF3 degradation |
| T8202 | 1091-1107 | Binding | denotes | NIK accumulation |
| T8193 | 1112-1132 | Phosphorylation | denotes | IKK1 phosphorylation |
| T8190 | 881-894 | Binding | denotes | recruiting it |
| T8188 | 951-1003 | Regulation | denotes | which are essential for subsequent TRAF3 degradation |
| T8184 | 921-950 | Binding | denotes | to attract TRAF2 and cIAP1/2, |
| T8173 | 844-911 | Negative_regulation | denotes | to remove TRAF3 from this complex by recruiting it to the receptor, |
| T8172 | 1026-1042 | Regulation | denotes | to releasing NIK |
| T8166 | 177-181 | Protein | denotes | p52, |
| T8160 | 692-697 | Protein | denotes | TRAF3 |
| T8156 | 783-800 | Entity | denotes | by the proteasome |
| T8151 | 1091-1094 | Protein | denotes | NIK |
| T8143 | 604-619 | Entity | denotes | most cell types |
| T8132 | 55-68 | Protein | denotes | lymphotoxin β |
| T8128 | 493-496 | Protein | denotes | NIK |
| T8116 | 703-710 | Protein | denotes | cIAP1/2 |
| T8112 | 802-810 | Protein | denotes | Receptor |
| T8103 | 17-30 | Protein | denotes | NF-κB pathway |
| T8101 | 156-181 | Entity | denotes | by the proteasome to p52, |
| T8096 | 860-877 | Entity | denotes | from this complex |
| T8093 | 624-642 | Entity | denotes | unstimulated cells |
| T8091 | 898-911 | Protein | denotes | the receptor, |
| T8082 | 365-395 | Protein | denotes | The noncanonical NF-κB pathway |
| T8079 | 211-216 | Protein | denotes | NF-κB |
| T8075 | 499-502 | Protein | denotes | NIK |
| T8074 | 685-690 | Protein | denotes | TRAF2 |
| T8071 | 94-98 | Protein | denotes | CD40 |
| T8069 | 986-991 | Protein | denotes | TRAF3 |
| T8068 | 79-92 | Protein | denotes | BAFF receptor |
| T8065 | 644-647 | Protein | denotes | NIK |
| T8063 | 51-77 | Protein | denotes | the lymphotoxin β receptor |
| T8059 | 104-108 | Protein | denotes | RANK |
| T8052 | 703-710 | Protein | denotes | cIAP1/2 |
| T8043 | 138-142 | Protein | denotes | p100 |
| T8029 | 1039-1042 | Protein | denotes | NIK |
| T8028 | 942-950 | Protein | denotes | cIAP1/2, |
| T8027 | 854-859 | Protein | denotes | TRAF3 |
| T8023 | 932-937 | Protein | denotes | TRAF2 |
| T8013 | 1112-1116 | Protein | denotes | IKK1 |
| T8001 | 467-497 | Protein | denotes | by NF-κB inducing kinase (NIK) |
| T8000 | 253-298 | Protein | denotes | target genes that control B-cell development, |
| T7997 | 709-710 | Protein | denotes | 2 |
| T7994 | 658-679 | Entity | denotes | a cytoplasmic complex |
| T7993 | 79-83 | Protein | denotes | BAFF |
| T7990 | 418-426 | Protein | denotes | on IKK1, |
| T7971 | 279-285 | Entity | denotes | B-cell |
| R5489 | T8013 | T8193 | themeOf | IKK1,IKK1 phosphorylation |
| R5497 | T8023 | T8184 | themeOf | TRAF2,"to attract TRAF2 and cIAP1/2," |
| R5500 | T8027 | T8173 | themeOf | TRAF3,"to remove TRAF3 from this complex by recruiting it to the receptor," |
| R5501 | T8028 | T8184 | themeOf | "cIAP1/2,","to attract TRAF2 and cIAP1/2," |
| R5502 | T8029 | T8172 | themeOf | NIK,to releasing NIK |
| R5532 | T8069 | T8203 | themeOf | TRAF3,for subsequent TRAF3 degradation |
| R5551 | T8203 | T8188 | themeOf | for subsequent TRAF3 degradation,which are essential for subsequent TRAF3 degradation |
| R5561 | T8151 | T8202 | themeOf | NIK,NIK accumulation |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7534 | 1117-1132 | Phosphorylation | denotes | phosphorylation |
| T7533 | 1095-1107 | Positive_regulation | denotes | accumulation |
| T7532 | 1112-1116 | Protein | denotes | IKK1 |
| T7531 | 1091-1094 | Protein | denotes | NIK |
| T7530 | 992-1003 | Protein_catabolism | denotes | degradation |
| T7529 | 992-1003 | Protein_catabolism | denotes | degradation |
| T7528 | 847-853 | Negative_regulation | denotes | remove |
| T7527 | 942-949 | Protein | denotes | cIAP1/2 |
| T7526 | 932-937 | Protein | denotes | TRAF2 |
| T7525 | 854-859 | Protein | denotes | TRAF3 |
| T7524 | 745-752 | Positive_regulation | denotes | leading |
| T7523 | 771-782 | Protein_catabolism | denotes | degradation |
| T7522 | 672-679 | Binding | denotes | complex |
| T7521 | 672-679 | Binding | denotes | complex |
| T7520 | 672-679 | Binding | denotes | complex |
| T7519 | 703-710 | Protein | denotes | cIAP1/2 |
| T7518 | 692-697 | Protein | denotes | TRAF3 |
| T7517 | 685-690 | Protein | denotes | TRAF2 |
| T7516 | 644-647 | Protein | denotes | NIK |
| T7515 | 436-445 | Positive_regulation | denotes | activated |
| T7514 | 436-445 | Positive_regulation | denotes | activated |
| T7513 | 436-445 | Positive_regulation | denotes | activated |
| T7512 | 436-445 | Positive_regulation | denotes | activated |
| T7511 | 451-466 | Phosphorylation | denotes | phosphorylation |
| T7510 | 451-466 | Phosphorylation | denotes | phosphorylation |
| T7509 | 436-445 | Positive_regulation | denotes | activated |
| T7508 | 408-417 | Positive_regulation | denotes | dependent |
| T7507 | 493-496 | Protein | denotes | NIK |
| T7506 | 470-491 | Protein | denotes | NF-κB inducing kinase |
| T7505 | 421-425 | Protein | denotes | IKK1 |
| T7504 | 382-387 | Protein | denotes | NF-κB |
| T7503 | 214-216 | Protein | denotes | κB |
| T7502 | 206-213 | Protein | denotes | RelB NF |
| T7501 | 177-180 | Protein | denotes | p52 |
| T7500 | 138-142 | Protein | denotes | p100 |
| T7499 | 104-108 | Protein | denotes | RANK |
| T7498 | 94-98 | Protein | denotes | CD40 |
| T7497 | 79-92 | Protein | denotes | BAFF receptor |
| T7496 | 55-77 | Protein | denotes | lymphotoxin β receptor |
| T7495 | 17-22 | Protein | denotes | NF-κB |
| T7537 | 1095-1107 | Positive_regulation | denotes | accumulation |
| T7536 | 1078-1087 | Positive_regulation | denotes | resulting |
| T7535 | 1078-1087 | Positive_regulation | denotes | resulting |
| R5190 | T7505 | T7508 | themeOf | IKK1,dependent |
| R5191 | T7505 | T7509 | themeOf | IKK1,activated |
| R5192 | T7505 | T7510 | themeOf | IKK1,phosphorylation |
| R5194 | T7507 | T7511 | themeOf | NIK,phosphorylation |
| R5197 | T7509 | T7507 | Cause | activated,NIK |
| R5198 | T7510 | T7512 | themeOf | phosphorylation,activated |
| R5199 | T7510 | T7514 | themeOf | phosphorylation,activated |
| R5200 | T7511 | T7513 | themeOf | phosphorylation,activated |
| R5201 | T7511 | T7515 | themeOf | phosphorylation,activated |
| R5203 | T7512 | T7506 | Cause | activated,NF-κB inducing kinase |
| R5205 | T7513 | T7506 | Cause | activated,NF-κB inducing kinase |
| R5206 | T7514 | T7507 | Cause | activated,NIK |
| R5207 | T7515 | T7507 | Cause | activated,NIK |
| R5208 | T7516 | T7520 | themeOf | NIK,complex |
| R5209 | T7516 | T7521 | themeOf | NIK,complex |
| R5210 | T7516 | T7522 | themeOf | NIK,complex |
| R5211 | T7516 | T7523 | themeOf | NIK,degradation |
| R5212 | T7517 | T7520 | themeOf | TRAF2,complex |
| R5213 | T7518 | T7521 | themeOf | TRAF3,complex |
| R5214 | T7519 | T7522 | themeOf | cIAP1/2,complex |
| R5218 | T7523 | T7524 | themeOf | degradation,leading |
| R5220 | T7525 | T7528 | themeOf | TRAF3,remove |
| R5222 | T7526 | T7529 | themeOf | TRAF2,degradation |
| R5224 | T7527 | T7530 | themeOf | cIAP1/2,degradation |
| R5226 | T7531 | T7533 | themeOf | NIK,accumulation |
| R5227 | T7532 | T7534 | themeOf | IKK1,phosphorylation |
| R5228 | T7533 | T7535 | themeOf | accumulation,resulting |
| R5229 | T7534 | T7536 | themeOf | phosphorylation,resulting |
| R5230 | T7534 | T7537 | themeOf | phosphorylation,accumulation |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4210 | 1117-1132 | Phosphorylation | denotes | phosphorylation |
| T4209 | 1112-1116 | Protein | denotes | IKK1 |
| T4208 | 1091-1094 | Protein | denotes | NIK |
| T4207 | 1065-1076 | Protein_catabolism | denotes | degradation |
| T4206 | 1039-1042 | Protein | denotes | NIK |
| T4205 | 992-1003 | Protein_catabolism | denotes | degradation |
| T4204 | 986-991 | Protein | denotes | TRAF3 |
| T4203 | 961-970 | Positive_regulation | denotes | essential |
| T4202 | 948-949 | Protein | denotes | 2 |
| T4201 | 942-947 | Protein | denotes | cIAP1 |
| T4200 | 932-937 | Protein | denotes | TRAF2 |
| T4199 | 854-859 | Protein | denotes | TRAF3 |
| T4198 | 771-782 | Protein_catabolism | denotes | degradation |
| T4197 | 740-743 | Protein | denotes | NIK |
| T4196 | 709-710 | Protein | denotes | 2 |
| T4195 | 703-708 | Protein | denotes | cIAP1 |
| T4194 | 692-697 | Protein | denotes | TRAF3 |
| T4193 | 685-690 | Protein | denotes | TRAF2 |
| T4192 | 644-647 | Protein | denotes | NIK |
| T4191 | 499-502 | Protein | denotes | NIK |
| T4190 | 493-496 | Protein | denotes | NIK |
| T4189 | 470-491 | Protein | denotes | NF-κB inducing kinase |
| T4188 | 451-466 | Phosphorylation | denotes | phosphorylation |
| T4187 | 436-445 | Positive_regulation | denotes | activated |
| T4186 | 421-425 | Protein | denotes | IKK1 |
| T4185 | 408-417 | Regulation | denotes | dependent |
| T4184 | 206-210 | Protein | denotes | RelB |
| T4183 | 177-180 | Protein | denotes | p52 |
| T4182 | 138-142 | Protein | denotes | p100 |
| T4181 | 104-108 | Protein | denotes | RANK |
| T4180 | 94-98 | Protein | denotes | CD40 |
| T4179 | 79-92 | Protein | denotes | BAFF receptor |
| T4178 | 55-77 | Protein | denotes | lymphotoxin β receptor |
| T4177 | 38-47 | Positive_regulation | denotes | activated |
| T4075 | 1112-1116 | Protein | denotes | IKK1 |
| T4074 | 1091-1094 | Protein | denotes | NIK |
| T4073 | 1039-1042 | Protein | denotes | NIK |
| T4072 | 986-991 | Protein | denotes | TRAF3 |
| T4071 | 948-949 | Protein | denotes | 2 |
| T4070 | 942-947 | Protein | denotes | cIAP1 |
| T4069 | 932-937 | Protein | denotes | TRAF2 |
| T4068 | 854-859 | Protein | denotes | TRAF3 |
| T4067 | 740-743 | Protein | denotes | NIK |
| T4066 | 709-710 | Protein | denotes | 2 |
| T4065 | 703-708 | Protein | denotes | cIAP1 |
| T4064 | 692-697 | Protein | denotes | TRAF3 |
| T4063 | 685-690 | Protein | denotes | TRAF2 |
| T4062 | 644-647 | Protein | denotes | NIK |
| T4061 | 499-502 | Protein | denotes | NIK |
| T4060 | 493-496 | Protein | denotes | NIK |
| T4059 | 470-491 | Protein | denotes | NF-κB inducing kinase |
| T4058 | 421-425 | Protein | denotes | IKK1 |
| T4057 | 206-210 | Protein | denotes | RelB |
| T4056 | 177-180 | Protein | denotes | p52 |
| T4055 | 138-142 | Protein | denotes | p100 |
| T4054 | 104-108 | Protein | denotes | RANK |
| T4053 | 94-98 | Protein | denotes | CD40 |
| T4052 | 79-92 | Protein | denotes | BAFF receptor |
| T4051 | 55-77 | Protein | denotes | lymphotoxin β receptor |
| R2881 | T4178 | T4177 | causeOf | lymphotoxin β receptor,activated |
| R2882 | T4186 | T4188 | themeOf | IKK1,phosphorylation |
| R2883 | T4186 | T4185 | causeOf | IKK1,dependent |
| R2884 | T4186 | T4187 | themeOf | IKK1,activated |
| R2885 | T4189 | T4187 | causeOf | NF-κB inducing kinase,activated |
| R2886 | T4189 | T4188 | causeOf | NF-κB inducing kinase,phosphorylation |
| R2887 | T4190 | T4189 | equivalentTo | NIK,NF-κB inducing kinase |
| R2888 | T4192 | T4198 | themeOf | NIK,degradation |
| R2889 | T4193 | T4198 | themeOf | TRAF2,degradation |
| R2890 | T4194 | T4198 | themeOf | TRAF3,degradation |
| R2891 | T4195 | T4198 | themeOf | cIAP1,degradation |
| R2892 | T4196 | T4198 | themeOf | 2,degradation |
| R2893 | T4197 | T4198 | themeOf | NIK,degradation |
| R2894 | T4204 | T4205 | themeOf | TRAF3,degradation |
| R2895 | T4205 | T4203 | themeOf | degradation,essential |
| R2896 | T4206 | T4207 | themeOf | NIK,degradation |
| R2897 | T4208 | T4210 | themeOf | NIK,phosphorylation |
| R2898 | T4209 | T4210 | themeOf | IKK1,phosphorylation |