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PMC:3218875 / 12569-12685 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T3969 19-27 Positive_regulation denotes activate
T3906 93-96 Protein denotes TNF
T3905 28-32 Protein denotes TAK1
R2802 T3905 T3969 themeOf TAK1,activate

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6530 115-116 . denotes .
T6529 114-115 -RRB- denotes )
T6528 113-114 CD denotes 1
T6527 106-112 NN denotes Figure
T6526 105-106 -LRB- denotes (
T6525 97-104 NN denotes pathway
T6524 93-96 NNP denotes TNF
T6523 89-92 DT denotes the
T6522 86-88 TO denotes to
T6521 78-85 JJ denotes similar
T6520 71-77 NN denotes manner
T6519 46-70 JJ denotes ubiquitination-dependent
T6518 44-45 DT denotes a
T6517 41-43 IN denotes in
T6516 37-40 NNP denotes IKK
T6515 33-36 CC denotes and
T6514 28-32 CD denotes TAK1
T6513 19-27 VBP denotes activate
T6512 14-18 RB denotes then
T6511 5-13 NNS denotes pathways
T6510 0-4 DT denotes Both
R4673 T6510 T6511 det Both,pathways
R4676 T6511 T6513 nsubj pathways,activate
R4680 T6512 T6513 advmod then,activate
R4683 T6513 T6513 ROOT activate,activate
R4685 T6514 T6513 dobj TAK1,activate
R4686 T6515 T6514 cc and,TAK1
R4689 T6516 T6514 conj IKK,TAK1
R4692 T6517 T6514 prep in,TAK1
R4696 T6518 T6520 det a,manner
R4702 T6519 T6520 amod ubiquitination-dependent,manner
R4706 T6520 T6517 pobj manner,in
R4710 T6521 T6520 amod similar,manner
R4714 T6522 T6521 prep to,similar
R4718 T6523 T6525 det the,pathway
R4722 T6524 T6525 compound TNF,pathway
R4726 T6525 T6522 pobj pathway,to
R4730 T6526 T6525 punct (,pathway
R4734 T6527 T6525 appos Figure,pathway
R4738 T6528 T6527 nummod 1,Figure
R4741 T6529 T6525 punct ),pathway
R4745 T6530 T6513 punct .,activate

DLUT931

Id Subject Object Predicate Lexical cue
T7213 46-70 Regulation denotes ubiquitination-dependent
T7212 19-27 Positive_regulation denotes activate
T7150 93-96 Protein denotes TNF
T7149 28-32 Protein denotes TAK1
R5066 T7149 T7212 themeOf TAK1,activate
R5094 T7212 T7213 themeOf activate,ubiquitination-dependent

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6884 93-96 http://www.uniprot.org/uniprot/P01375 denotes TNF

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4527 93-96 Protein denotes TNF
T4526 28-32 Protein denotes TAK1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5164 114-115 -RRB- denotes )
T5163 113-114 CD denotes 1
T5162 106-112 NN denotes Figure
T5161 105-106 -LRB- denotes (
T5160 97-104 NN denotes pathway
T5159 93-96 NN denotes TNF
T5158 89-92 DT denotes the
T5157 86-88 TO denotes to
T5156 78-85 JJ denotes similar
T5155 71-77 NN denotes manner
T5154 46-70 JJ denotes ubiquitination-dependent
T5153 44-45 DT denotes a
T5152 41-43 IN denotes in
T5151 37-40 NN denotes IKK
T5150 33-36 CC denotes and
T5149 28-32 NN denotes TAK1
T5148 19-27 VB denotes activate
T5147 14-18 RB denotes then
T5146 5-13 NN denotes pathways
T5145 0-4 DT denotes Both
R3612 T5146 T5145 arg1Of pathways,Both
R3613 T5146 T5148 arg1Of pathways,activate
R3614 T5148 T5147 arg1Of activate,then
R3615 T5148 T5152 arg1Of activate,in
R3616 T5149 T5150 arg1Of TAK1,and
R3617 T5150 T5148 arg2Of and,activate
R3618 T5151 T5150 arg2Of IKK,and
R3619 T5155 T5152 arg2Of manner,in
R3620 T5155 T5153 arg1Of manner,a
R3621 T5155 T5154 arg1Of manner,ubiquitination-dependent
R3622 T5155 T5156 arg1Of manner,similar
R3623 T5156 T5157 arg1Of similar,to
R3624 T5160 T5157 arg2Of pathway,to
R3625 T5160 T5158 arg1Of pathway,the
R3626 T5160 T5159 arg1Of pathway,TNF
R3627 T5160 T5161 arg1Of pathway,(
R3628 T5162 T5161 arg2Of Figure,(
R3629 T5162 T5163 arg1Of Figure,1
R3630 T5164 T5161 arg3Of ),(

GO-BP

Id Subject Object Predicate Lexical cue
T5517 37-40 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK

GO-MF

Id Subject Object Predicate Lexical cue
T5617 37-40 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK

sentences

Id Subject Object Predicate Lexical cue
T4255 0-116 Sentence denotes Both pathways then activate TAK1 and IKK in a ubiquitination-dependent manner similar to the TNF pathway (Figure 1).
T67 0-116 Sentence denotes Both pathways then activate TAK1 and IKK in a ubiquitination-dependent manner similar to the TNF pathway (Figure 1).

simple1

Id Subject Object Predicate Lexical cue
T5856 93-96 Protein denotes TNF
T5855 28-32 Protein denotes TAK1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7946 19-27 Positive_regulation denotes activate
T7885 93-96 Protein denotes TNF
T7884 28-32 Protein denotes TAK1
R5469 T7884 T7946 themeOf TAK1,activate

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7066 19-27 Positive_regulation denotes activate
T7008 93-96 Protein denotes TNF
T7007 28-32 Protein denotes TAK1
R4947 T7007 T7066 themeOf TAK1,activate

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8161 28-32 Protein denotes TAK1
T8017 86-115 Protein denotes to the TNF pathway (Figure 1)

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7494 19-27 Positive_regulation denotes activate
T7493 19-27 Positive_regulation denotes activate
T7492 93-96 Protein denotes TNF
T7491 37-40 Protein denotes IKK
T7490 28-32 Protein denotes TAK1
R5184 T7490 T7493 themeOf TAK1,activate
R5185 T7491 T7494 themeOf IKK,activate

test3

Id Subject Object Predicate Lexical cue
T4176 93-96 Protein denotes TNF
T4175 28-32 Protein denotes TAK1
T4050 93-96 Protein denotes TNF
T4049 28-32 Protein denotes TAK1