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PMC:3218875 / 12347-12498 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T3966 118-136 Negative_regulation denotes selfubiquitination
T3901 140-145 Protein denotes TRAF6
T3900 80-85 Protein denotes TRAF6
T3899 0-5 Protein denotes MyD88
R2795 T3901 T3966 themeOf TRAF6,selfubiquitination

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6492 150-151 . denotes .
T6491 149-150 NNP denotes ]
T6490 147-149 CD denotes 24
T6489 146-147 NNP denotes [
T6488 140-145 CD denotes TRAF6
T6487 137-139 IN denotes of
T6486 118-136 NN denotes selfubiquitination
T6485 114-117 CC denotes and
T6484 98-113 NN denotes oligomerisation
T6483 95-97 TO denotes to
T6482 87-94 VBG denotes leading
T6481 85-86 , denotes ,
T6480 80-85 CD denotes TRAF6
T6479 76-79 CC denotes and
T6478 69-75 NN denotes family
T6477 67-68 -RRB- denotes )
T6476 63-67 NNP denotes IRAK
T6475 62-63 -LRB- denotes (
T6474 55-61 NN denotes kinase
T6473 38-54 JJ denotes IL-1R-associated
T6472 34-37 DT denotes the
T6471 31-33 IN denotes of
T6470 23-30 NNS denotes members
T6469 14-22 NNS denotes recruits
T6468 9-13 NN denotes turn
T6467 6-8 IN denotes in
T6466 0-5 CD denotes MyD88
R4515 T6466 T6469 nummod MyD88,recruits
R4519 T6467 T6469 prep in,recruits
R4522 T6468 T6467 pobj turn,in
R4526 T6469 T6469 ROOT recruits,recruits
R4531 T6470 T6469 dobj members,recruits
R4533 T6471 T6470 prep of,members
R4534 T6472 T6474 det the,kinase
R4535 T6473 T6474 amod IL-1R-associated,kinase
R4538 T6474 T6471 pobj kinase,of
R4541 T6475 T6474 punct (,kinase
R4545 T6476 T6474 appos IRAK,kinase
R4553 T6477 T6476 punct ),IRAK
R4554 T6478 T6474 conj family,kinase
R4556 T6479 T6478 cc and,family
R4559 T6480 T6478 conj TRAF6,family
R4562 T6481 T6469 punct ",",recruits
R4567 T6482 T6469 advcl leading,recruits
R4570 T6483 T6482 prep to,leading
R4574 T6484 T6483 pobj oligomerisation,to
R4577 T6485 T6484 cc and,oligomerisation
R4579 T6486 T6484 conj selfubiquitination,oligomerisation
R4581 T6487 T6486 prep of,selfubiquitination
R4584 T6488 T6491 nummod TRAF6,]
R4589 T6489 T6491 nmod [,]
R4592 T6490 T6491 nummod 24,]
R4596 T6491 T6487 pobj ],of
R4605 T6492 T6469 punct .,recruits

DLUT931

Id Subject Object Predicate Lexical cue
T7209 87-94 Positive_regulation denotes leading
T7208 98-113 Binding denotes oligomerisation
T7207 14-22 Binding denotes recruits
T7145 140-145 Protein denotes TRAF6
T7144 80-85 Protein denotes TRAF6
T7143 0-5 Protein denotes MyD88
R5053 T7143 T7207 themeOf MyD88,recruits
R5054 T7144 T7207 themeOf TRAF6,recruits
R5055 T7145 T7208 themeOf TRAF6,oligomerisation
R5088 T7208 T7209 themeOf oligomerisation,leading

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6917 140-145 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6
T6916 80-85 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4522 140-145 Protein denotes TRAF6
T4521 80-85 Protein denotes TRAF6
T4520 0-5 Protein denotes MyD88

2_test

Id Subject Object Predicate Lexical cue
21639951-18438411-4289453 147-149 18438411 denotes 24

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5128 149-150 -RRB- denotes ]
T5127 147-149 CD denotes 24
T5126 146-147 -LRB- denotes [
T5125 140-145 NN denotes TRAF6
T5124 137-139 IN denotes of
T5123 118-136 NN denotes selfubiquitination
T5122 114-117 CC denotes and
T5121 98-113 NN denotes oligomerisation
T5120 95-97 TO denotes to
T5119 87-94 VB denotes leading
T5118 85-86 -COMMA- denotes ,
T5117 80-85 NN denotes TRAF6
T5116 76-79 CC denotes and
T5115 69-75 NN denotes family
T5114 67-68 -RRB- denotes )
T5113 63-67 NN denotes IRAK
T5112 62-63 -LRB- denotes (
T5111 55-61 NN denotes kinase
T5110 38-54 JJ denotes IL-1R-associated
T5109 34-37 DT denotes the
T5108 31-33 IN denotes of
T5107 23-30 NN denotes members
T5106 14-22 VB denotes recruits
T5105 9-13 NN denotes turn
T5104 6-8 IN denotes in
T5103 0-5 NN denotes MyD88
R3572 T5103 T5106 arg1Of MyD88,recruits
R3573 T5105 T5104 arg2Of turn,in
R3574 T5106 T5104 arg1Of recruits,in
R3575 T5106 T5118 arg1Of recruits,","
R3576 T5106 T5119 modOf recruits,leading
R3577 T5106 T5126 arg1Of recruits,[
R3578 T5107 T5106 arg2Of members,recruits
R3579 T5107 T5108 arg1Of members,of
R3580 T5113 T5112 arg2Of IRAK,(
R3581 T5114 T5112 arg3Of ),(
R3582 T5115 T5116 arg1Of family,and
R3583 T5116 T5108 arg2Of and,of
R3584 T5116 T5109 arg1Of and,the
R3585 T5116 T5110 arg1Of and,IL-1R-associated
R3586 T5116 T5111 arg1Of and,kinase
R3587 T5116 T5112 arg1Of and,(
R3588 T5117 T5116 arg2Of TRAF6,and
R3589 T5119 T5120 arg1Of leading,to
R3590 T5121 T5122 arg1Of oligomerisation,and
R3591 T5122 T5120 arg2Of and,to
R3592 T5122 T5124 arg1Of and,of
R3593 T5123 T5122 arg2Of selfubiquitination,and
R3594 T5125 T5124 arg2Of TRAF6,of
R3595 T5127 T5126 arg2Of 24,[
R3596 T5128 T5126 arg3Of ],[

GO-BP

Id Subject Object Predicate Lexical cue
T5588 38-43 http://purl.obolibrary.org/obo/GO_0004908 denotes IL-1R

GO-MF

Id Subject Object Predicate Lexical cue
T5673 38-43 http://purl.obolibrary.org/obo/GO_0004908 denotes IL-1R

sentences

Id Subject Object Predicate Lexical cue
T4253 0-151 Sentence denotes MyD88 in turn recruits members of the IL-1R-associated kinase (IRAK) family and TRAF6, leading to oligomerisation and selfubiquitination of TRAF6 [24].
T65 0-151 Sentence denotes MyD88 in turn recruits members of the IL-1R-associated kinase (IRAK) family and TRAF6, leading to oligomerisation and selfubiquitination of TRAF6 [24].

simple1

Id Subject Object Predicate Lexical cue
T5851 140-145 Protein denotes TRAF6
T5850 80-85 Protein denotes TRAF6
T5849 0-5 Protein denotes MyD88

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7880 140-145 Protein denotes TRAF6
T7879 80-85 Protein denotes TRAF6
T7878 0-5 Protein denotes MyD88

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7003 140-145 Protein denotes TRAF6
T7002 80-85 Protein denotes TRAF6
T7001 0-5 Protein denotes MyD88

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8189 122-150 Ubiquitination denotes ubiquitination of TRAF6 [24]
T8149 38-42 Protein denotes IL-1
T8105 98-113 Protein denotes oligomerisation
T8094 55-68 Protein denotes kinase (IRAK)
T8084 80-86 Protein denotes TRAF6,
T8019 137-150 Protein denotes of TRAF6 [24]
T8003 63-67 Protein denotes IRAK
T7999 0-5 Protein denotes MyD88
R5495 T8019 T8189 themeOf of TRAF6 [24],ubiquitination of TRAF6 [24]

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7484 98-113 Binding denotes oligomerisation
T7483 14-22 Binding denotes recruits
T7482 14-22 Binding denotes recruits
T7481 140-145 Protein denotes TRAF6
T7480 80-85 Protein denotes TRAF6
T7479 63-67 Protein denotes IRAK
T7478 38-61 Protein denotes IL-1R-associated kinase
T7477 0-5 Protein denotes MyD88
R5284 T7477 T7482 themeOf MyD88,recruits
R5285 T7477 T7483 themeOf MyD88,recruits
R5286 T7479 T7482 themeOf IRAK,recruits
R5289 T7480 T7483 themeOf TRAF6,recruits
R5291 T7481 T7484 themeOf TRAF6,oligomerisation

test3

Id Subject Object Predicate Lexical cue
T4045 140-145 Protein denotes TRAF6
T4044 80-85 Protein denotes TRAF6
T4043 0-5 Protein denotes MyD88
T4169 140-145 Protein denotes TRAF6
T4168 80-85 Protein denotes TRAF6
T4167 0-5 Protein denotes MyD88