PMC:3218875 / 12347-12498
Annnotations
testone
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3966 | 118-136 | Negative_regulation | denotes | selfubiquitination |
T3901 | 140-145 | Protein | denotes | TRAF6 |
T3900 | 80-85 | Protein | denotes | TRAF6 |
T3899 | 0-5 | Protein | denotes | MyD88 |
R2795 | T3901 | T3966 | themeOf | TRAF6,selfubiquitination |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6492 | 150-151 | . | denotes | . |
T6491 | 149-150 | NNP | denotes | ] |
T6490 | 147-149 | CD | denotes | 24 |
T6489 | 146-147 | NNP | denotes | [ |
T6488 | 140-145 | CD | denotes | TRAF6 |
T6487 | 137-139 | IN | denotes | of |
T6486 | 118-136 | NN | denotes | selfubiquitination |
T6485 | 114-117 | CC | denotes | and |
T6484 | 98-113 | NN | denotes | oligomerisation |
T6483 | 95-97 | TO | denotes | to |
T6482 | 87-94 | VBG | denotes | leading |
T6481 | 85-86 | , | denotes | , |
T6480 | 80-85 | CD | denotes | TRAF6 |
T6479 | 76-79 | CC | denotes | and |
T6478 | 69-75 | NN | denotes | family |
T6477 | 67-68 | -RRB- | denotes | ) |
T6476 | 63-67 | NNP | denotes | IRAK |
T6475 | 62-63 | -LRB- | denotes | ( |
T6474 | 55-61 | NN | denotes | kinase |
T6473 | 38-54 | JJ | denotes | IL-1R-associated |
T6472 | 34-37 | DT | denotes | the |
T6471 | 31-33 | IN | denotes | of |
T6470 | 23-30 | NNS | denotes | members |
T6469 | 14-22 | NNS | denotes | recruits |
T6468 | 9-13 | NN | denotes | turn |
T6467 | 6-8 | IN | denotes | in |
T6466 | 0-5 | CD | denotes | MyD88 |
R4515 | T6466 | T6469 | nummod | MyD88,recruits |
R4519 | T6467 | T6469 | prep | in,recruits |
R4522 | T6468 | T6467 | pobj | turn,in |
R4526 | T6469 | T6469 | ROOT | recruits,recruits |
R4531 | T6470 | T6469 | dobj | members,recruits |
R4533 | T6471 | T6470 | prep | of,members |
R4534 | T6472 | T6474 | det | the,kinase |
R4535 | T6473 | T6474 | amod | IL-1R-associated,kinase |
R4538 | T6474 | T6471 | pobj | kinase,of |
R4541 | T6475 | T6474 | punct | (,kinase |
R4545 | T6476 | T6474 | appos | IRAK,kinase |
R4553 | T6477 | T6476 | punct | ),IRAK |
R4554 | T6478 | T6474 | conj | family,kinase |
R4556 | T6479 | T6478 | cc | and,family |
R4559 | T6480 | T6478 | conj | TRAF6,family |
R4562 | T6481 | T6469 | punct | ",",recruits |
R4567 | T6482 | T6469 | advcl | leading,recruits |
R4570 | T6483 | T6482 | prep | to,leading |
R4574 | T6484 | T6483 | pobj | oligomerisation,to |
R4577 | T6485 | T6484 | cc | and,oligomerisation |
R4579 | T6486 | T6484 | conj | selfubiquitination,oligomerisation |
R4581 | T6487 | T6486 | prep | of,selfubiquitination |
R4584 | T6488 | T6491 | nummod | TRAF6,] |
R4589 | T6489 | T6491 | nmod | [,] |
R4592 | T6490 | T6491 | nummod | 24,] |
R4596 | T6491 | T6487 | pobj | ],of |
R4605 | T6492 | T6469 | punct | .,recruits |
DLUT931
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7209 | 87-94 | Positive_regulation | denotes | leading |
T7208 | 98-113 | Binding | denotes | oligomerisation |
T7207 | 14-22 | Binding | denotes | recruits |
T7145 | 140-145 | Protein | denotes | TRAF6 |
T7144 | 80-85 | Protein | denotes | TRAF6 |
T7143 | 0-5 | Protein | denotes | MyD88 |
R5053 | T7143 | T7207 | themeOf | MyD88,recruits |
R5054 | T7144 | T7207 | themeOf | TRAF6,recruits |
R5055 | T7145 | T7208 | themeOf | TRAF6,oligomerisation |
R5088 | T7208 | T7209 | themeOf | oligomerisation,leading |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6917 | 140-145 | http://www.uniprot.org/uniprot/Q9Y4K3 | denotes | TRAF6 |
T6916 | 80-85 | http://www.uniprot.org/uniprot/Q9Y4K3 | denotes | TRAF6 |
bionlp-st-ge-2016-test-proteins
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4522 | 140-145 | Protein | denotes | TRAF6 |
T4521 | 80-85 | Protein | denotes | TRAF6 |
T4520 | 0-5 | Protein | denotes | MyD88 |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
21639951-18438411-4289453 | 147-149 | 18438411 | denotes | 24 |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5128 | 149-150 | -RRB- | denotes | ] |
T5127 | 147-149 | CD | denotes | 24 |
T5126 | 146-147 | -LRB- | denotes | [ |
T5125 | 140-145 | NN | denotes | TRAF6 |
T5124 | 137-139 | IN | denotes | of |
T5123 | 118-136 | NN | denotes | selfubiquitination |
T5122 | 114-117 | CC | denotes | and |
T5121 | 98-113 | NN | denotes | oligomerisation |
T5120 | 95-97 | TO | denotes | to |
T5119 | 87-94 | VB | denotes | leading |
T5118 | 85-86 | -COMMA- | denotes | , |
T5117 | 80-85 | NN | denotes | TRAF6 |
T5116 | 76-79 | CC | denotes | and |
T5115 | 69-75 | NN | denotes | family |
T5114 | 67-68 | -RRB- | denotes | ) |
T5113 | 63-67 | NN | denotes | IRAK |
T5112 | 62-63 | -LRB- | denotes | ( |
T5111 | 55-61 | NN | denotes | kinase |
T5110 | 38-54 | JJ | denotes | IL-1R-associated |
T5109 | 34-37 | DT | denotes | the |
T5108 | 31-33 | IN | denotes | of |
T5107 | 23-30 | NN | denotes | members |
T5106 | 14-22 | VB | denotes | recruits |
T5105 | 9-13 | NN | denotes | turn |
T5104 | 6-8 | IN | denotes | in |
T5103 | 0-5 | NN | denotes | MyD88 |
R3572 | T5103 | T5106 | arg1Of | MyD88,recruits |
R3573 | T5105 | T5104 | arg2Of | turn,in |
R3574 | T5106 | T5104 | arg1Of | recruits,in |
R3575 | T5106 | T5118 | arg1Of | recruits,"," |
R3576 | T5106 | T5119 | modOf | recruits,leading |
R3577 | T5106 | T5126 | arg1Of | recruits,[ |
R3578 | T5107 | T5106 | arg2Of | members,recruits |
R3579 | T5107 | T5108 | arg1Of | members,of |
R3580 | T5113 | T5112 | arg2Of | IRAK,( |
R3581 | T5114 | T5112 | arg3Of | ),( |
R3582 | T5115 | T5116 | arg1Of | family,and |
R3583 | T5116 | T5108 | arg2Of | and,of |
R3584 | T5116 | T5109 | arg1Of | and,the |
R3585 | T5116 | T5110 | arg1Of | and,IL-1R-associated |
R3586 | T5116 | T5111 | arg1Of | and,kinase |
R3587 | T5116 | T5112 | arg1Of | and,( |
R3588 | T5117 | T5116 | arg2Of | TRAF6,and |
R3589 | T5119 | T5120 | arg1Of | leading,to |
R3590 | T5121 | T5122 | arg1Of | oligomerisation,and |
R3591 | T5122 | T5120 | arg2Of | and,to |
R3592 | T5122 | T5124 | arg1Of | and,of |
R3593 | T5123 | T5122 | arg2Of | selfubiquitination,and |
R3594 | T5125 | T5124 | arg2Of | TRAF6,of |
R3595 | T5127 | T5126 | arg2Of | 24,[ |
R3596 | T5128 | T5126 | arg3Of | ],[ |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5588 | 38-43 | http://purl.obolibrary.org/obo/GO_0004908 | denotes | IL-1R |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5673 | 38-43 | http://purl.obolibrary.org/obo/GO_0004908 | denotes | IL-1R |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4253 | 0-151 | Sentence | denotes | MyD88 in turn recruits members of the IL-1R-associated kinase (IRAK) family and TRAF6, leading to oligomerisation and selfubiquitination of TRAF6 [24]. |
T65 | 0-151 | Sentence | denotes | MyD88 in turn recruits members of the IL-1R-associated kinase (IRAK) family and TRAF6, leading to oligomerisation and selfubiquitination of TRAF6 [24]. |
simple1
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5851 | 140-145 | Protein | denotes | TRAF6 |
T5850 | 80-85 | Protein | denotes | TRAF6 |
T5849 | 0-5 | Protein | denotes | MyD88 |
BioNLP16_DUT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7880 | 140-145 | Protein | denotes | TRAF6 |
T7879 | 80-85 | Protein | denotes | TRAF6 |
T7878 | 0-5 | Protein | denotes | MyD88 |
BioNLP16_Messiy
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7003 | 140-145 | Protein | denotes | TRAF6 |
T7002 | 80-85 | Protein | denotes | TRAF6 |
T7001 | 0-5 | Protein | denotes | MyD88 |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T8189 | 122-150 | Ubiquitination | denotes | ubiquitination of TRAF6 [24] |
T8149 | 38-42 | Protein | denotes | IL-1 |
T8105 | 98-113 | Protein | denotes | oligomerisation |
T8094 | 55-68 | Protein | denotes | kinase (IRAK) |
T8084 | 80-86 | Protein | denotes | TRAF6, |
T8019 | 137-150 | Protein | denotes | of TRAF6 [24] |
T8003 | 63-67 | Protein | denotes | IRAK |
T7999 | 0-5 | Protein | denotes | MyD88 |
R5495 | T8019 | T8189 | themeOf | of TRAF6 [24],ubiquitination of TRAF6 [24] |
bionlp-st-ge-2016-test-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7484 | 98-113 | Binding | denotes | oligomerisation |
T7483 | 14-22 | Binding | denotes | recruits |
T7482 | 14-22 | Binding | denotes | recruits |
T7481 | 140-145 | Protein | denotes | TRAF6 |
T7480 | 80-85 | Protein | denotes | TRAF6 |
T7479 | 63-67 | Protein | denotes | IRAK |
T7478 | 38-61 | Protein | denotes | IL-1R-associated kinase |
T7477 | 0-5 | Protein | denotes | MyD88 |
R5284 | T7477 | T7482 | themeOf | MyD88,recruits |
R5285 | T7477 | T7483 | themeOf | MyD88,recruits |
R5286 | T7479 | T7482 | themeOf | IRAK,recruits |
R5289 | T7480 | T7483 | themeOf | TRAF6,recruits |
R5291 | T7481 | T7484 | themeOf | TRAF6,oligomerisation |
test3
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4045 | 140-145 | Protein | denotes | TRAF6 |
T4044 | 80-85 | Protein | denotes | TRAF6 |
T4043 | 0-5 | Protein | denotes | MyD88 |
T4169 | 140-145 | Protein | denotes | TRAF6 |
T4168 | 80-85 | Protein | denotes | TRAF6 |
T4167 | 0-5 | Protein | denotes | MyD88 |