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PMC:3218875 / 11546-11740 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T3888 134-137 Protein denotes TNF
T3887 75-79 Protein denotes NEMO

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6368 193-194 . denotes .
T6367 192-193 NNP denotes ]
T6366 190-192 CD denotes 22
T6365 189-190 NNP denotes [
T6364 178-188 NN denotes complexity
T6363 170-177 JJ denotes further
T6362 165-169 VBZ denotes adds
T6361 154-164 NN denotes signalling
T6360 148-153 JJ denotes NF-κB
T6359 134-147 JJ denotes TNF-activated
T6358 130-133 IN denotes for
T6357 120-129 JJ denotes essential
T6356 117-119 VBZ denotes is
T6355 113-116 CC denotes and
T6354 106-112 NNS denotes chains
T6353 92-105 NN denotes polyubiquitin
T6352 85-91 JJ denotes linear
T6351 80-84 IN denotes with
T6350 75-79 NNP denotes NEMO
T6349 66-74 VBZ denotes modifies
T6348 61-65 WDT denotes that
T6347 53-60 NN denotes complex
T6346 46-52 NN denotes enzyme
T6345 40-45 CD denotes E2/E3
T6344 31-39 JJ denotes distinct
T6343 29-30 DT denotes a
T6342 26-28 IN denotes of
T6341 11-25 NN denotes identification
T6340 4-10 JJ denotes recent
T6339 0-3 DT denotes The
R4395 T6339 T6341 det The,identification
R4396 T6340 T6341 amod recent,identification
R4397 T6341 T6356 nsubj identification,is
R4398 T6342 T6341 prep of,identification
R4399 T6343 T6347 det a,complex
R4401 T6344 T6347 amod distinct,complex
R4405 T6345 T6346 nummod E2/E3,enzyme
R4406 T6346 T6347 compound enzyme,complex
R4408 T6347 T6342 pobj complex,of
R4409 T6348 T6349 nsubj that,modifies
R4410 T6349 T6347 relcl modifies,complex
R4412 T6350 T6349 dobj NEMO,modifies
R4413 T6351 T6349 prep with,modifies
R4415 T6352 T6354 amod linear,chains
R4416 T6353 T6354 compound polyubiquitin,chains
R4417 T6354 T6351 pobj chains,with
R4418 T6355 T6349 cc and,modifies
R4419 T6356 T6362 ccomp is,adds
R4420 T6357 T6356 acomp essential,is
R4422 T6358 T6357 prep for,essential
R4423 T6359 T6361 amod TNF-activated,signalling
R4425 T6360 T6361 compound NF-κB,signalling
R4426 T6361 T6358 pobj signalling,for
R4427 T6362 T6362 ROOT adds,adds
R4428 T6363 T6364 amod further,complexity
R4430 T6364 T6362 dobj complexity,adds
R4431 T6365 T6367 nmod [,]
R4432 T6366 T6367 nummod 22,]
R4434 T6367 T6362 npadvmod ],adds
R4435 T6368 T6362 punct .,adds

DLUT931

Id Subject Object Predicate Lexical cue
T7132 134-137 Protein denotes TNF
T7131 75-79 Protein denotes NEMO

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6900 75-79 http://www.uniprot.org/uniprot/Q9Y6K9 denotes NEMO
T6883 134-137 http://www.uniprot.org/uniprot/P01375 denotes TNF

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4509 134-137 Protein denotes TNF
T4508 75-79 Protein denotes NEMO

2_test

Id Subject Object Predicate Lexical cue
21639951-19136968-4289451 190-192 19136968 denotes 22

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5009 192-193 -RRB- denotes ]
T5008 190-192 CD denotes 22
T5007 189-190 -LRB- denotes [
T5006 178-188 NN denotes complexity
T5005 170-177 JJ denotes further
T5004 165-169 VB denotes adds
T5003 154-164 NN denotes signalling
T5002 148-153 NN denotes NF-κB
T5001 134-147 JJ denotes TNF-activated
T5000 130-133 IN denotes for
T4999 120-129 JJ denotes essential
T4998 117-119 VB denotes is
T4997 113-116 CC denotes and
T4996 106-112 NN denotes chains
T4995 92-105 NN denotes polyubiquitin
T4994 85-91 JJ denotes linear
T4993 80-84 IN denotes with
T4992 75-79 NN denotes NEMO
T4991 66-74 VB denotes modifies
T4990 61-65 WDT denotes that
T4989 53-60 NN denotes complex
T4988 46-52 NN denotes enzyme
T4987 40-45 NN denotes E2/E3
T4986 31-39 JJ denotes distinct
T4985 29-30 DT denotes a
T4984 26-28 IN denotes of
T4983 11-25 NN denotes identification
T4982 4-10 JJ denotes recent
T4981 0-3 DT denotes The
R3447 T4983 T4981 arg1Of identification,The
R3448 T4983 T4982 arg1Of identification,recent
R3449 T4983 T4984 arg1Of identification,of
R3450 T4983 T5004 arg1Of identification,adds
R3451 T4989 T4984 arg2Of complex,of
R3452 T4989 T4985 arg1Of complex,a
R3453 T4989 T4986 arg1Of complex,distinct
R3454 T4989 T4987 arg1Of complex,E2/E3
R3455 T4989 T4988 arg1Of complex,enzyme
R3456 T4989 T4990 arg1Of complex,that
R3457 T4989 T4991 arg1Of complex,modifies
R3458 T4989 T4998 arg1Of complex,is
R3459 T4989 T4999 arg1Of complex,essential
R3460 T4991 T4997 arg1Of modifies,and
R3461 T4992 T4991 arg2Of NEMO,modifies
R3462 T4992 T4993 arg1Of NEMO,with
R3463 T4996 T4993 arg2Of chains,with
R3464 T4996 T4994 arg1Of chains,linear
R3465 T4996 T4995 arg1Of chains,polyubiquitin
R3466 T4998 T4997 arg2Of is,and
R3467 T4999 T4998 arg2Of essential,is
R3468 T4999 T5000 arg1Of essential,for
R3469 T5003 T5000 arg2Of signalling,for
R3470 T5003 T5001 arg1Of signalling,TNF-activated
R3471 T5003 T5002 arg1Of signalling,NF-κB
R3472 T5006 T5004 arg2Of complexity,adds
R3473 T5006 T5005 arg1Of complexity,further
R3474 T5006 T5007 arg1Of complexity,[
R3475 T5008 T5007 arg2Of 22,[
R3476 T5009 T5007 arg3Of ],[

GO-BP

Id Subject Object Predicate Lexical cue
T5585 138-164 http://purl.obolibrary.org/obo/GO_1901224 denotes activated NF-κB signalling
T5584 40-42 http://purl.obolibrary.org/obo/GO_0061658 denotes E2
T5583 40-42 http://purl.obolibrary.org/obo/GO_0061657 denotes E2
T5582 40-42 http://purl.obolibrary.org/obo/GO_0061656 denotes E2
T5581 40-42 http://purl.obolibrary.org/obo/GO_0061655 denotes E2
T5580 40-42 http://purl.obolibrary.org/obo/GO_0061654 denotes E2
T5579 40-42 http://purl.obolibrary.org/obo/GO_0061653 denotes E2
T5578 40-42 http://purl.obolibrary.org/obo/GO_0061652 denotes E2
T5577 40-42 http://purl.obolibrary.org/obo/GO_0061651 denotes E2
T5576 40-42 http://purl.obolibrary.org/obo/GO_0061650 denotes E2
T5575 40-42 http://purl.obolibrary.org/obo/GO_0061631 denotes E2
T5572 92-105 http://purl.obolibrary.org/obo/GO_0000209 denotes polyubiquitin
T5566 43-45 http://purl.obolibrary.org/obo/GO_0061667 denotes E3
T5563 43-45 http://purl.obolibrary.org/obo/GO_0061666 denotes E3
T5560 43-45 http://purl.obolibrary.org/obo/GO_0061665 denotes E3
T5557 43-45 http://purl.obolibrary.org/obo/GO_0061664 denotes E3
T5554 43-45 http://purl.obolibrary.org/obo/GO_0061663 denotes E3
T5551 43-45 http://purl.obolibrary.org/obo/GO_0061662 denotes E3
T5548 43-45 http://purl.obolibrary.org/obo/GO_0061661 denotes E3
T5545 43-45 http://purl.obolibrary.org/obo/GO_0061660 denotes E3
T5542 43-45 http://purl.obolibrary.org/obo/GO_0061659 denotes E3
T5539 43-45 http://purl.obolibrary.org/obo/GO_0061630 denotes E3
T5536 40-42 http://purl.obolibrary.org/obo/GO_0019787 denotes E2
T5533 40-42 http://purl.obolibrary.org/obo/GO_0004842 denotes E2
T5528 138-153 http://purl.obolibrary.org/obo/GO_0051092 denotes activated NF-κB
T5506 154-164 http://purl.obolibrary.org/obo/GO_0023052 denotes signalling
T5501 148-164 http://purl.obolibrary.org/obo/GO_0038061 denotes NF-κB signalling

GO-MF

Id Subject Object Predicate Lexical cue
T5670 40-42 http://purl.obolibrary.org/obo/GO_0061658 denotes E2
T5669 40-42 http://purl.obolibrary.org/obo/GO_0061657 denotes E2
T5668 40-42 http://purl.obolibrary.org/obo/GO_0061656 denotes E2
T5667 40-42 http://purl.obolibrary.org/obo/GO_0061655 denotes E2
T5666 40-42 http://purl.obolibrary.org/obo/GO_0061654 denotes E2
T5665 40-42 http://purl.obolibrary.org/obo/GO_0061653 denotes E2
T5664 40-42 http://purl.obolibrary.org/obo/GO_0061652 denotes E2
T5663 40-42 http://purl.obolibrary.org/obo/GO_0061651 denotes E2
T5629 43-45 http://purl.obolibrary.org/obo/GO_0061659 denotes E3
T5626 43-45 http://purl.obolibrary.org/obo/GO_0061630 denotes E3
T5623 40-42 http://purl.obolibrary.org/obo/GO_0019787 denotes E2
T5620 40-42 http://purl.obolibrary.org/obo/GO_0004842 denotes E2
T5662 40-42 http://purl.obolibrary.org/obo/GO_0061650 denotes E2
T5661 40-42 http://purl.obolibrary.org/obo/GO_0061631 denotes E2
T5653 43-45 http://purl.obolibrary.org/obo/GO_0061667 denotes E3
T5650 43-45 http://purl.obolibrary.org/obo/GO_0061666 denotes E3
T5647 43-45 http://purl.obolibrary.org/obo/GO_0061665 denotes E3
T5644 43-45 http://purl.obolibrary.org/obo/GO_0061664 denotes E3
T5641 43-45 http://purl.obolibrary.org/obo/GO_0061663 denotes E3
T5638 43-45 http://purl.obolibrary.org/obo/GO_0061662 denotes E3
T5635 43-45 http://purl.obolibrary.org/obo/GO_0061661 denotes E3
T5632 43-45 http://purl.obolibrary.org/obo/GO_0061660 denotes E3

GO-CC

Id Subject Object Predicate Lexical cue
T5689 46-60 http://purl.obolibrary.org/obo/GO_1902494 denotes enzyme complex

sentences

Id Subject Object Predicate Lexical cue
T4249 0-194 Sentence denotes The recent identification of a distinct E2/E3 enzyme complex that modifies NEMO with linear polyubiquitin chains and is essential for TNF-activated NF-κB signalling adds further complexity [22].
T61 0-194 Sentence denotes The recent identification of a distinct E2/E3 enzyme complex that modifies NEMO with linear polyubiquitin chains and is essential for TNF-activated NF-κB signalling adds further complexity [22].

simple1

Id Subject Object Predicate Lexical cue
T5838 134-137 Protein denotes TNF
T5837 75-79 Protein denotes NEMO

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7938 66-74 Regulation denotes modifies
T7867 134-137 Protein denotes TNF
T7866 75-79 Protein denotes NEMO
R5451 T7866 T7938 themeOf NEMO,modifies

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7059 66-74 Regulation denotes modifies
T6990 134-137 Protein denotes TNF
T6989 75-79 Protein denotes NEMO
R4928 T6989 T7059 themeOf NEMO,modifies

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8199 130-164 Positive_regulation denotes for TNF-activated NF-κB signalling
T8195 26-164 Regulation denotes of a distinct E2/E3 enzyme complex that modifies NEMO with linear polyubiquitin chains and is essential for TNF-activated NF-κB signalling
T8142 75-79 Protein denotes NEMO
T8139 134-147 Protein denotes TNF-activated
T7968 26-164 Protein denotes of a distinct E2/E3 enzyme complex that modifies NEMO with linear polyubiquitin chains and is essential for TNF-activated NF-κB signalling
T8042 130-164 Protein denotes for TNF-activated NF-κB signalling
T8020 92-105 Protein denotes polyubiquitin
T7978 26-164 Entity denotes of a distinct E2/E3 enzyme complex that modifies NEMO with linear polyubiquitin chains and is essential for TNF-activated NF-κB signalling
R5467 T7978 T8195 causeOf of a distinct E2/E3 enzyme complex that modifies NEMO with linear polyubiquitin chains and is essential for TNF-activated NF-κB signalling,of a distinct E2/E3 enzyme complex that modifies NEMO with linear polyubiquitin chains and is essential for TNF-activated NF-κB signalling
R5511 T8042 T8199 themeOf for TNF-activated NF-κB signalling,for TNF-activated NF-κB signalling
R5556 T8139 T8199 causeOf TNF-activated,for TNF-activated NF-κB signalling
R5558 T8142 T8195 themeOf NEMO,of a distinct E2/E3 enzyme complex that modifies NEMO with linear polyubiquitin chains and is essential for TNF-activated NF-κB signalling

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7455 138-147 Positive_regulation denotes activated
T7454 148-153 Protein denotes NF-κB
T7453 134-137 Protein denotes TNF
T7452 43-45 Protein denotes E3
T7451 40-42 Protein denotes E2
R5239 T7454 T7455 themeOf NF-κB,activated
R5260 T7455 T7453 Cause activated,TNF

test3

Id Subject Object Predicate Lexical cue
T4032 134-137 Protein denotes TNF
T4031 75-79 Protein denotes NEMO
T4154 134-137 Protein denotes TNF
T4153 75-79 Protein denotes NEMO