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PMC:3218875 / 1139-1466 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T956 324-325 , denotes ,
T955 314-324 VBN denotes understood
T954 310-313 RB denotes not
T953 304-309 RB denotes still
T952 301-303 VBZ denotes is
T951 298-300 NNP denotes RA
T950 295-297 IN denotes of
T949 285-294 NN denotes aetiology
T948 281-284 DT denotes The
T947 279-280 . denotes .
T946 275-279 NN denotes bone
T945 263-274 JJ denotes subchondral
T944 259-262 CC denotes and
T943 249-258 NN denotes cartilage
T942 239-248 JJ denotes articular
T941 230-238 VBZ denotes degrades
T940 226-229 CC denotes and
T939 218-225 VBZ denotes invades
T938 212-217 WDT denotes which
T937 210-211 , denotes ,
T936 204-210 NN denotes tissue
T935 197-203 NN denotes pannus
T934 194-196 IN denotes of
T933 184-193 NN denotes formation
T932 180-183 DT denotes the
T931 177-179 TO denotes to
T930 171-176 VBZ denotes leads
T929 159-170 NNS denotes fibroblasts
T928 150-158 JJ denotes synovial
T927 147-149 IN denotes of
T926 133-146 NNP denotes Proliferation
T925 131-132 . denotes .
T924 126-131 NNS denotes cells
T923 117-125 JJ denotes synovial
T922 113-116 CC denotes and
T921 103-112 NNS denotes monocytes
T920 90-102 VBG denotes infiltrating
T919 87-89 IN denotes by
T918 68-86 NNS denotes metalloproteinases
T917 61-67 NN denotes matrix
T908 13-16 CC denotes and
T907 11-12 CD denotes 1
T906 6-10 NN denotes type
T916 57-60 CC denotes and
T915 55-56 , denotes ,
T914 45-55 NNS denotes chemokines
T913 43-44 , denotes ,
T912 34-43 NNS denotes cytokines
T911 31-33 CD denotes 17
T910 26-30 NN denotes type
T909 17-25 NNP denotes T-helper
R717 T907 T906 nummod 1,type
R718 T908 T906 cc and,type
R719 T909 T910 compound T-helper,type
R720 T910 T906 conj type,type
R721 T911 T912 nummod 17,cytokines
R722 T912 T906 appos cytokines,type
R723 T913 T912 punct ",",cytokines
R724 T914 T912 conj chemokines,cytokines
R725 T915 T914 punct ",",chemokines
R726 T916 T914 cc and,chemokines
R727 T917 T918 compound matrix,metalloproteinases
R728 T918 T914 conj metalloproteinases,chemokines
R730 T920 T919 pcomp infiltrating,by
R731 T921 T920 dobj monocytes,infiltrating
R732 T922 T921 cc and,monocytes
R733 T923 T924 amod synovial,cells
R734 T924 T921 conj cells,monocytes
R736 T926 T930 nsubj Proliferation,leads
R737 T927 T926 prep of,Proliferation
R738 T928 T929 amod synovial,fibroblasts
R739 T929 T927 pobj fibroblasts,of
R740 T930 T930 ROOT leads,leads
R741 T931 T930 prep to,leads
R742 T932 T933 det the,formation
R743 T933 T931 pobj formation,to
R744 T934 T933 prep of,formation
R745 T935 T936 amod pannus,tissue
R746 T936 T934 pobj tissue,of
R747 T937 T936 punct ",",tissue
R748 T938 T939 nsubj which,invades
R749 T939 T936 relcl invades,tissue
R750 T940 T939 cc and,invades
R751 T941 T939 conj degrades,invades
R752 T942 T943 amod articular,cartilage
R753 T943 T941 dobj cartilage,degrades
R754 T944 T943 cc and,cartilage
R755 T945 T946 amod subchondral,bone
R756 T946 T943 conj bone,cartilage
R757 T947 T930 punct .,leads
R758 T948 T949 det The,aetiology
R759 T949 T952 nsubj aetiology,is
R760 T950 T949 prep of,aetiology
R761 T951 T950 pobj RA,of
R762 T952 T955 auxpass is,understood
R763 T953 T955 advmod still,understood
R764 T954 T955 neg not,understood
R765 T955 T955 ROOT understood,understood
R766 T956 T955 punct ",",understood

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T494 324-325 -COMMA- denotes ,
T493 314-324 VB denotes understood
T492 310-313 RB denotes not
T491 304-309 RB denotes still
T490 301-303 VB denotes is
T489 298-300 NN denotes RA
T488 295-297 IN denotes of
T487 285-294 NN denotes aetiology
T486 281-284 DT denotes The
T485 275-279 NN denotes bone
T484 263-274 JJ denotes subchondral
T483 259-262 CC denotes and
T482 249-258 NN denotes cartilage
T481 239-248 JJ denotes articular
T480 230-238 VB denotes degrades
T479 226-229 CC denotes and
T478 218-225 VB denotes invades
T477 212-217 WDT denotes which
T476 210-211 -COMMA- denotes ,
T475 204-210 NN denotes tissue
T474 197-203 NN denotes pannus
T473 194-196 IN denotes of
T472 184-193 NN denotes formation
T471 180-183 DT denotes the
T470 177-179 TO denotes to
T469 171-176 VB denotes leads
T468 159-170 NN denotes fibroblasts
T467 150-158 JJ denotes synovial
T466 147-149 IN denotes of
T465 133-146 NN denotes Proliferation
T464 126-131 NN denotes cells
T463 117-125 JJ denotes synovial
T462 113-116 CC denotes and
T461 103-112 NN denotes monocytes
T460 90-102 VB denotes infiltrating
T459 87-89 IN denotes by
T458 68-86 NN denotes metalloproteinases
T457 61-67 NN denotes matrix
T456 57-60 CC denotes and
T455 55-56 -COMMA- denotes ,
T454 45-55 NN denotes chemokines
T453 43-44 -COMMA- denotes ,
T452 34-43 NN denotes cytokines
T451 31-33 CD denotes 17
T450 26-30 NN denotes type
T449 17-25 NN denotes T-helper
T448 13-16 CC denotes and
T447 11-12 CD denotes 1
T446 6-10 NN denotes type
R306 T447 T448 arg1Of 1,and
R307 T449 T448 arg2Of T-helper,and
R310 T452 T446 arg1Of cytokines,type
R311 T452 T447 arg1Of cytokines,1
R312 T452 T449 arg1Of cytokines,T-helper
R313 T452 T450 arg1Of cytokines,type
R314 T452 T451 arg1Of cytokines,17
R315 T452 T453 arg1Of cytokines,","
R316 T453 T456 arg1Of ",",and
R317 T454 T453 arg2Of chemokines,","
R319 T456 T455 arg1Of and,","
R320 T458 T456 arg2Of metalloproteinases,and
R321 T458 T457 arg1Of metalloproteinases,matrix
R322 T460 T459 arg2Of infiltrating,by
R323 T461 T462 arg1Of monocytes,and
R324 T462 T460 arg2Of and,infiltrating
R325 T464 T462 arg2Of cells,and
R326 T464 T463 arg1Of cells,synovial
R327 T465 T466 arg1Of Proliferation,of
R328 T465 T469 arg1Of Proliferation,leads
R329 T468 T466 arg2Of fibroblasts,of
R330 T468 T467 arg1Of fibroblasts,synovial
R331 T469 T470 arg1Of leads,to
R332 T472 T470 arg2Of formation,to
R333 T472 T471 arg1Of formation,the
R334 T472 T473 arg1Of formation,of
R335 T475 T473 arg2Of tissue,of
R336 T475 T474 arg1Of tissue,pannus
R337 T475 T476 arg1Of tissue,","
R338 T475 T477 arg1Of tissue,which
R339 T475 T478 arg1Of tissue,invades
R340 T475 T480 arg1Of tissue,degrades
R341 T478 T479 arg1Of invades,and
R342 T480 T479 arg2Of degrades,and
R343 T482 T481 arg1Of cartilage,articular
R344 T482 T483 arg1Of cartilage,and
R345 T483 T478 arg2Of and,invades
R346 T483 T480 arg2Of and,degrades
R347 T485 T483 arg2Of bone,and
R348 T485 T484 arg1Of bone,subchondral
R349 T487 T486 arg1Of aetiology,The
R350 T487 T488 arg1Of aetiology,of
R351 T487 T490 arg1Of aetiology,is
R352 T487 T493 arg2Of aetiology,understood
R353 T489 T488 arg2Of RA,of
R354 T493 T490 arg2Of understood,is
R355 T493 T491 arg1Of understood,still
R356 T493 T492 arg1Of understood,not

UBERON-AE

Id Subject Object Predicate Lexical cue
T322 204-210 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue

GO-BP

Id Subject Object Predicate Lexical cue
T780 230-238 http://purl.obolibrary.org/obo/GO_0009056 denotes degrades
T779 184-193 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T778 126-146 http://purl.obolibrary.org/obo/GO_0008283 denotes cells. Proliferation

GO-CC

Id Subject Object Predicate Lexical cue
T812 126-131 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T327 133-280 Sentence denotes Proliferation of synovial fibroblasts leads to the formation of pannus tissue, which invades and degrades articular cartilage and subchondral bone.
T10 133-280 Sentence denotes Proliferation of synovial fibroblasts leads to the formation of pannus tissue, which invades and degrades articular cartilage and subchondral bone.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1588 90-131 Binding denotes infiltrating monocytes and synovial cells
T1581 61-86 Protein denotes matrix metalloproteinases
T1574 103-112 Entity denotes monocytes
T1556 31-43 Protein denotes 17 cytokines
T1551 147-170 Entity denotes of synovial fibroblasts
T1549 45-56 Protein denotes chemokines,
T1544 6-12 Protein denotes type 1
T1540 17-25 Entity denotes T-helper
T1537 117-131 Entity denotes synovial cells
T1532 295-300 Protein denotes of RA