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PMC:3218875 / 11377-11545 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T3962 121-128 Binding denotes binding
T3961 111-121 Entity denotes ubiquitin-
T3960 70-77 Binding denotes recruit
T3886 152-153 Protein denotes 2
T3885 147-151 Protein denotes TAB1
T3884 138-142 Protein denotes NEMO
T3883 90-94 Protein denotes TAK1
T3882 28-32 Protein denotes RIP1
R2788 T3883 T3960 themeOf TAK1,recruit
R2833 T3961 T3962 themeOf ubiquitin-,binding

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6338 167-168 . denotes .
T6337 155-167 RB denotes respectively
T6336 153-154 , denotes ,
T6335 147-153 NNP denotes TAB1/2
T6334 143-146 CC denotes and
T6333 138-142 NNP denotes NEMO
T6332 129-137 NNS denotes proteins
T6331 111-128 JJ denotes ubiquitin-binding
T6330 107-110 DT denotes the
T6329 103-106 IN denotes via
T6328 95-102 JJ denotes complex
T6327 90-94 CD denotes TAK1
T6326 86-89 CC denotes and
T6325 82-85 NNP denotes IKK
T6324 78-81 DT denotes the
T6323 70-77 VB denotes recruit
T6322 67-69 TO denotes to
T6321 58-66 NN denotes scaffold
T6320 56-57 DT denotes a
T6319 49-55 VB denotes create
T6318 46-48 TO denotes to
T6317 37-45 VBN denotes believed
T6316 33-36 VBP denotes are
T6315 28-32 NNP denotes RIP1
T6314 25-27 IN denotes on
T6313 18-24 NNS denotes chains
T6312 4-17 NN denotes polyubiquitin
T6311 0-3 DT denotes The
R4355 T6311 T6313 det The,chains
R4356 T6312 T6313 compound polyubiquitin,chains
R4357 T6313 T6317 nsubjpass chains,believed
R4359 T6314 T6313 prep on,chains
R4360 T6315 T6314 pobj RIP1,on
R4362 T6316 T6317 auxpass are,believed
R4363 T6317 T6317 ROOT believed,believed
R4364 T6318 T6319 aux to,create
R4366 T6319 T6317 xcomp create,believed
R4367 T6320 T6321 det a,scaffold
R4368 T6321 T6319 dobj scaffold,create
R4370 T6322 T6323 aux to,recruit
R4371 T6323 T6319 advcl recruit,create
R4373 T6324 T6325 det the,IKK
R4374 T6325 T6323 dobj IKK,recruit
R4375 T6326 T6325 cc and,IKK
R4377 T6327 T6328 nummod TAK1,complex
R4378 T6328 T6317 conj complex,believed
R4380 T6329 T6328 prep via,complex
R4381 T6330 T6332 det the,proteins
R4382 T6331 T6332 amod ubiquitin-binding,proteins
R4383 T6332 T6329 pobj proteins,via
R4385 T6333 T6332 appos NEMO,proteins
R4386 T6334 T6333 cc and,NEMO
R4388 T6335 T6333 conj TAB1/2,NEMO
R4391 T6336 T6335 punct ",",TAB1/2
R4392 T6337 T6333 conj respectively,NEMO
R4394 T6338 T6317 punct .,believed

DLUT931

Id Subject Object Predicate Lexical cue
T7202 111-128 Binding denotes ubiquitin-binding
T7201 70-77 Binding denotes recruit
T7130 152-153 Protein denotes 2
T7129 147-151 Protein denotes TAB1
T7128 138-142 Protein denotes NEMO
T7127 90-94 Protein denotes TAK1
T7126 28-32 Protein denotes RIP1
R5012 T7127 T7201 themeOf TAK1,recruit
R5013 T7127 T7201 themeOf TAK1,recruit
R5014 T7127 T7201 themeOf TAK1,recruit
R5015 T7128 T7201 themeOf NEMO,recruit
R5016 T7128 T7202 themeOf NEMO,ubiquitin-binding
R5017 T7128 T7202 themeOf NEMO,ubiquitin-binding
R5018 T7129 T7202 themeOf TAB1,ubiquitin-binding
R5019 T7129 T7201 themeOf TAB1,recruit
R5020 T7129 T7202 themeOf TAB1,ubiquitin-binding
R5021 T7130 T7201 themeOf 2,recruit
R5022 T7130 T7202 themeOf 2,ubiquitin-binding
R5023 T7130 T7202 themeOf 2,ubiquitin-binding

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6904 28-32 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T6899 138-142 http://www.uniprot.org/uniprot/Q9Y6K9 denotes NEMO

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4507 152-153 Protein denotes 2
T4506 147-151 Protein denotes TAB1
T4505 138-142 Protein denotes NEMO
T4504 90-94 Protein denotes TAK1
T4503 28-32 Protein denotes RIP1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4980 155-167 RB denotes respectively
T4979 153-154 -COMMA- denotes ,
T4978 147-153 NN denotes TAB1/2
T4977 143-146 CC denotes and
T4976 138-142 NN denotes NEMO
T4975 129-137 NN denotes proteins
T4974 111-128 JJ denotes ubiquitin-binding
T4973 107-110 DT denotes the
T4972 103-106 IN denotes via
T4971 95-102 NN denotes complex
T4970 90-94 NN denotes TAK1
T4969 86-89 CC denotes and
T4968 82-85 NN denotes IKK
T4967 78-81 DT denotes the
T4966 70-77 VB denotes recruit
T4965 67-69 TO denotes to
T4964 58-66 NN denotes scaffold
T4963 56-57 DT denotes a
T4962 49-55 VB denotes create
T4961 46-48 TO denotes to
T4960 37-45 VB denotes believed
T4959 33-36 VB denotes are
T4958 28-32 NN denotes RIP1
T4957 25-27 IN denotes on
T4956 18-24 NN denotes chains
T4955 4-17 NN denotes polyubiquitin
T4954 0-3 DT denotes The
R3418 T4956 T4954 arg1Of chains,The
R3419 T4956 T4955 arg1Of chains,polyubiquitin
R3420 T4956 T4957 arg1Of chains,on
R3421 T4956 T4959 arg1Of chains,are
R3422 T4956 T4960 arg2Of chains,believed
R3423 T4956 T4962 arg1Of chains,create
R3424 T4958 T4957 arg2Of RIP1,on
R3425 T4960 T4959 arg2Of believed,are
R3426 T4962 T4960 arg3Of create,believed
R3427 T4962 T4961 arg1Of create,to
R3428 T4964 T4962 arg2Of scaffold,create
R3429 T4964 T4963 arg1Of scaffold,a
R3430 T4964 T4965 modOf scaffold,to
R3431 T4966 T4965 arg1Of recruit,to
R3432 T4966 T4979 arg1Of recruit,","
R3433 T4966 T4980 arg1Of recruit,respectively
R3434 T4968 T4969 arg1Of IKK,and
R3435 T4970 T4969 arg2Of TAK1,and
R3436 T4971 T4966 arg2Of complex,recruit
R3437 T4971 T4967 arg1Of complex,the
R3438 T4971 T4968 arg1Of complex,IKK
R3439 T4971 T4970 arg1Of complex,TAK1
R3440 T4971 T4972 arg1Of complex,via
R3441 T4975 T4973 arg1Of proteins,the
R3442 T4975 T4974 arg1Of proteins,ubiquitin-binding
R3443 T4976 T4977 arg1Of NEMO,and
R3444 T4977 T4972 arg2Of and,via
R3445 T4977 T4975 arg1Of and,proteins
R3446 T4978 T4977 arg2Of TAB1/2,and

GO-BP

Id Subject Object Predicate Lexical cue
T5571 4-17 http://purl.obolibrary.org/obo/GO_0000209 denotes polyubiquitin
T5516 82-85 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK

GO-MF

Id Subject Object Predicate Lexical cue
T5616 82-85 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK
T5609 121-128 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T5660 121-137 http://purl.obolibrary.org/obo/GO_0005515 denotes binding proteins
T5659 111-137 http://purl.obolibrary.org/obo/GO_0032182 denotes ubiquitin-binding proteins
T5658 111-137 http://purl.obolibrary.org/obo/GO_0031625 denotes ubiquitin-binding proteins
T5657 111-128 http://purl.obolibrary.org/obo/GO_0043130 denotes ubiquitin-binding
T5656 111-120 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin

sentences

Id Subject Object Predicate Lexical cue
T4248 0-168 Sentence denotes The polyubiquitin chains on RIP1 are believed to create a scaffold to recruit the IKK and TAK1 complex via the ubiquitin-binding proteins NEMO and TAB1/2, respectively.
T60 0-168 Sentence denotes The polyubiquitin chains on RIP1 are believed to create a scaffold to recruit the IKK and TAK1 complex via the ubiquitin-binding proteins NEMO and TAB1/2, respectively.

simple1

Id Subject Object Predicate Lexical cue
T5836 152-153 Protein denotes 2
T5835 147-151 Protein denotes TAB1
T5834 138-142 Protein denotes NEMO
T5833 90-94 Protein denotes TAK1
T5832 28-32 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7937 70-77 Binding denotes recruit
T7865 152-153 Protein denotes 2
T7864 147-151 Protein denotes TAB1
T7863 138-142 Protein denotes NEMO
T7862 90-94 Protein denotes TAK1
T7861 28-32 Protein denotes RIP1
R5436 T7862 T7937 themeOf TAK1,recruit
R5440 T7862 T7937 themeOf TAK1,recruit
R5442 T7862 T7937 themeOf TAK1,recruit
R5445 T7863 T7937 themeOf NEMO,recruit
R5448 T7864 T7937 themeOf TAB1,recruit
R5449 T7865 T7937 themeOf 2,recruit

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7058 70-77 Binding denotes recruit
T6988 152-153 Protein denotes 2
T6987 147-151 Protein denotes TAB1
T6986 138-142 Protein denotes NEMO
T6985 90-94 Protein denotes TAK1
T6984 28-32 Protein denotes RIP1
R4924 T6986 T7058 themeOf NEMO,recruit
R4925 T6987 T7058 themeOf TAB1,recruit
R4927 T6988 T7058 themeOf 2,recruit

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8194 67-153 Binding denotes to recruit the IKK and TAK1 complex via the ubiquitin-binding proteins NEMO and TAB1/2
T8170 121-137 Binding denotes binding proteins
T8159 121-137 Protein denotes binding proteins
T8145 78-102 Entity denotes the IKK and TAK1 complex
T8131 107-142 Protein denotes the ubiquitin-binding proteins NEMO
T8122 152-153 Protein denotes 2
T8119 111-137 Protein denotes ubiquitin-binding proteins
T8088 111-137 Protein denotes ubiquitin-binding proteins
T8083 147-153 Protein denotes TAB1/2
T8081 28-32 Protein denotes RIP1
T8025 90-94 Protein denotes TAK1
T8012 147-153 Protein denotes TAB1/2
T7970 4-17 Protein denotes polyubiquitin
R5559 T8145 T8194 themeOf the IKK and TAK1 complex,to recruit the IKK and TAK1 complex via the ubiquitin-binding proteins NEMO and TAB1/2
R5563 T8159 T8170 themeOf binding proteins,binding proteins

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7450 147-153 Protein denotes TAB1/2
T7449 138-142 Protein denotes NEMO
T7448 111-120 Protein denotes ubiquitin
T7447 90-94 Protein denotes TAK1
T7446 82-85 Protein denotes IKK
T7445 28-32 Protein denotes RIP1
T7444 4-17 Protein denotes polyubiquitin

test3

Id Subject Object Predicate Lexical cue
T4030 152-153 Protein denotes 2
T4029 147-151 Protein denotes TAB1
T4028 138-142 Protein denotes NEMO
T4027 90-94 Protein denotes TAK1
T4026 28-32 Protein denotes RIP1
T4152 152-153 Protein denotes 2
T4151 147-151 Protein denotes TAB1
T4150 138-142 Protein denotes NEMO
T4149 121-128 Binding denotes binding
T4148 90-94 Protein denotes TAK1
T4147 70-77 Binding denotes recruit
T4146 28-32 Protein denotes RIP1
R2859 T4148 T4147 themeOf TAK1,recruit
R2860 T4150 T4149 themeOf NEMO,binding
R2861 T4151 T4149 themeOf TAB1,binding
R2862 T4151 T4147 themeOf TAB1,recruit
R2863 T4152 T4149 themeOf 2,binding