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PMC:3218875 / 10795-11163 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T3958 276-280 Binding denotes bind
T3957 31-42 Binding denotes recruitment
T3874 351-356 Protein denotes cIAP2
T3873 306-346 Protein denotes cellular inhibitor of apoptosis (cIAP) 1
T3872 255-260 Protein denotes TRAF5
T3871 211-250 Protein denotes TNF receptor-associated factor (TRAF) 2
T3870 140-144 Protein denotes RIP1
T3869 108-138 Protein denotes receptor interacting protein 1
T3868 86-91 Protein denotes TRADD
T3867 46-84 Protein denotes TNF receptor-1-associated death domain
T3866 0-3 Protein denotes TNF
R2778 T3867 T3957 themeOf TNF receptor-1-associated death domain,recruitment
R2779 T3868 T3867 equivalentTo TRADD,TNF receptor-1-associated death domain
R2780 T3869 T3957 themeOf receptor interacting protein 1,recruitment
R2781 T3870 T3867 equivalentTo RIP1,TNF receptor-1-associated death domain
R2782 T3870 T3869 equivalentTo RIP1,receptor interacting protein 1
R2783 T3871 T3958 themeOf TNF receptor-associated factor (TRAF) 2,bind
R2784 T3872 T3958 themeOf TRAF5,bind
R2785 T3873 T3958 themeOf cellular inhibitor of apoptosis (cIAP) 1,bind
R2786 T3874 T3958 themeOf cIAP2,bind

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6275 367-368 . denotes .
T6274 366-367 -RRB- denotes )
T6273 365-366 CD denotes 1
T6272 358-364 NNP denotes Figure
T6271 357-358 -LRB- denotes (
T6270 351-356 NNP denotes cIAP2
T6269 347-350 CC denotes and
T6268 345-346 CD denotes 1
T6267 343-344 -RRB- denotes )
T6266 339-343 NNP denotes cIAP
T6265 338-339 -LRB- denotes (
T6264 328-337 NN denotes apoptosis
T6263 325-327 IN denotes of
T6262 315-324 NN denotes inhibitor
T6261 306-314 JJ denotes cellular
T6260 298-305 VBZ denotes ligases
T6259 288-297 NN denotes ubiquitin
T6258 285-287 CD denotes E3
T6257 281-284 DT denotes the
T6256 276-280 NN denotes bind
T6255 271-275 NN denotes turn
T6254 268-270 IN denotes in
T6253 262-267 WDT denotes which
T6252 260-261 , denotes ,
T6251 255-260 CD denotes TRAF5
T6250 251-254 CC denotes and
T6249 249-250 CD denotes 2
T6248 247-248 -RRB- denotes )
T6247 243-247 NNP denotes TRAF
T6246 242-243 -LRB- denotes (
T6245 235-241 NN denotes factor
T6244 215-234 JJ denotes receptor-associated
T6243 211-214 NNP denotes TNF
T6242 203-210 VBZ denotes ligases
T6241 193-202 NN denotes ubiquitin
T6240 190-192 CD denotes E3
T6239 186-189 DT denotes the
T6238 182-185 IN denotes for
T6237 173-181 NNS denotes proteins
T6236 165-172 NN denotes adaptor
T6235 162-164 IN denotes as
T6234 153-161 VBP denotes function
T6233 147-152 WDT denotes which
T6232 145-146 , denotes ,
T6231 144-145 -RRB- denotes )
T6230 140-144 NN denotes RIP1
T6229 139-140 -LRB- denotes (
T6228 137-138 CD denotes 1
T6227 129-136 NN denotes protein
T6226 117-128 VBG denotes interacting
T6225 108-116 NN denotes receptor
T6224 105-107 IN denotes of
T6223 101-104 CC denotes and
T6222 93-100 NN denotes protein
T6221 91-92 -RRB- denotes )
T6220 86-91 NNP denotes TRADD
T6219 85-86 -LRB- denotes (
T6218 78-84 NN denotes domain
T6217 72-77 NN denotes death
T6216 50-71 JJ denotes receptor-1-associated
T6215 46-49 NNP denotes TNF
T6214 43-45 IN denotes of
T6213 31-42 NN denotes recruitment
T6212 27-30 DT denotes the
T6211 24-26 IN denotes in
T6210 16-23 NNS denotes results
T6209 4-15 NN denotes stimulation
T6208 0-3 NNP denotes TNF
R4213 T6208 T6210 compound TNF,results
R4214 T6209 T6210 compound stimulation,results
R4215 T6210 T6210 ROOT results,results
R4217 T6211 T6210 prep in,results
R4218 T6212 T6213 det the,recruitment
R4219 T6213 T6211 pobj recruitment,in
R4221 T6214 T6213 prep of,recruitment
R4222 T6215 T6218 nmod TNF,domain
R4223 T6216 T6218 amod receptor-1-associated,domain
R4225 T6217 T6218 compound death,domain
R4226 T6218 T6214 pobj domain,of
R4227 T6219 T6218 punct (,domain
R4229 T6220 T6218 appos TRADD,domain
R4230 T6221 T6220 punct ),TRADD
R4231 T6222 T6218 conj protein,domain
R4233 T6223 T6214 cc and,of
R4234 T6224 T6214 conj of,of
R4235 T6225 T6227 compound receptor,protein
R4237 T6226 T6227 compound interacting,protein
R4238 T6227 T6224 pobj protein,of
R4239 T6228 T6227 nummod 1,protein
R4241 T6229 T6227 punct (,protein
R4242 T6230 T6227 appos RIP1,protein
R4243 T6231 T6230 punct ),RIP1
R4244 T6232 T6227 punct ",",protein
R4245 T6233 T6234 nsubj which,function
R4246 T6234 T6210 relcl function,results
R4248 T6235 T6234 prep as,function
R4249 T6236 T6237 compound adaptor,proteins
R4250 T6237 T6235 pobj proteins,as
R4251 T6238 T6234 prep for,function
R4253 T6239 T6245 det the,factor
R4254 T6240 T6241 nummod E3,ubiquitin
R4256 T6241 T6242 nsubj ubiquitin,ligases
R4257 T6242 T6245 nmod ligases,factor
R4258 T6243 T6245 nmod TNF,factor
R4260 T6244 T6245 amod receptor-associated,factor
R4261 T6245 T6238 pobj factor,for
R4263 T6246 T6247 punct (,TRAF
R4264 T6247 T6245 appos TRAF,factor
R4269 T6248 T6247 punct ),TRAF
R4270 T6249 T6247 nummod 2,TRAF
R4272 T6250 T6247 cc and,TRAF
R4273 T6251 T6247 conj TRAF5,TRAF
R4274 T6252 T6245 punct ",",factor
R4276 T6253 T6256 nsubj which,bind
R4277 T6254 T6256 prep in,bind
R4278 T6255 T6254 pobj turn,in
R4280 T6256 T6245 relcl bind,factor
R4283 T6257 T6260 dobj the,ligases
R4284 T6258 T6259 nummod E3,ubiquitin
R4286 T6259 T6260 nsubj ubiquitin,ligases
R4287 T6260 T6256 dative ligases,bind
R4288 T6261 T6262 amod cellular,inhibitor
R4290 T6262 T6256 dobj inhibitor,bind
R4291 T6263 T6262 prep of,inhibitor
R4293 T6264 T6263 pobj apoptosis,of
R4294 T6265 T6266 punct (,cIAP
R4295 T6266 T6264 appos cIAP,apoptosis
R4296 T6267 T6256 punct ),bind
R4297 T6268 T6256 nummod 1,bind
R4299 T6269 T6256 cc and,bind
R4300 T6270 T6274 nmod cIAP2,)
R4301 T6271 T6272 punct (,Figure
R4303 T6272 T6270 appos Figure,cIAP2
R4304 T6273 T6272 nummod 1,Figure
R4305 T6274 T6256 conj ),bind
R4306 T6275 T6210 punct .,results

DLUT931

Id Subject Object Predicate Lexical cue
T7197 276-280 Binding denotes bind
T7196 31-42 Binding denotes recruitment
T7118 351-356 Protein denotes cIAP2
T7117 306-346 Protein denotes cellular inhibitor of apoptosis (cIAP) 1
T7116 255-260 Protein denotes TRAF5
T7115 211-250 Protein denotes TNF receptor-associated factor (TRAF) 2
T7114 140-144 Protein denotes RIP1
T7113 108-138 Protein denotes receptor interacting protein 1
T7112 86-91 Protein denotes TRADD
T7111 46-84 Protein denotes TNF receptor-1-associated death domain
T7110 0-3 Protein denotes TNF
R4978 T7111 T7196 themeOf TNF receptor-1-associated death domain,recruitment
R4979 T7112 T7196 themeOf TRADD,recruitment
R4980 T7112 T7196 themeOf TRADD,recruitment
R4981 T7113 T7196 themeOf receptor interacting protein 1,recruitment
R4982 T7113 T7197 themeOf receptor interacting protein 1,bind
R4983 T7113 T7196 themeOf receptor interacting protein 1,recruitment
R4984 T7113 T7197 themeOf receptor interacting protein 1,bind
R4985 T7113 T7197 themeOf receptor interacting protein 1,bind
R4987 T7114 T7196 themeOf RIP1,recruitment
R4988 T7114 T7197 themeOf RIP1,bind
R4989 T7114 T7197 themeOf RIP1,bind
R4990 T7114 T7197 themeOf RIP1,bind
R4991 T7115 T7197 themeOf TNF receptor-associated factor (TRAF) 2,bind
R4992 T7115 T7197 themeOf TNF receptor-associated factor (TRAF) 2,bind
R4993 T7116 T7197 themeOf TRAF5,bind
R4994 T7116 T7197 themeOf TRAF5,bind
R4995 T7116 T7197 themeOf TRAF5,bind
R4996 T7116 T7197 themeOf TRAF5,bind
R4997 T7117 T7197 themeOf cellular inhibitor of apoptosis (cIAP) 1,bind
R4998 T7117 T7197 themeOf cellular inhibitor of apoptosis (cIAP) 1,bind
R4999 T7117 T7197 themeOf cellular inhibitor of apoptosis (cIAP) 1,bind
R5000 T7117 T7197 themeOf cellular inhibitor of apoptosis (cIAP) 1,bind
R5001 T7118 T7197 themeOf cIAP2,bind
R5002 T7118 T7197 themeOf cIAP2,bind
R5003 T7118 T7197 themeOf cIAP2,bind
R5004 T7118 T7197 themeOf cIAP2,bind

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6901 140-144 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T6880 211-214 http://www.uniprot.org/uniprot/P01375 denotes TNF
T6879 46-49 http://www.uniprot.org/uniprot/P01375 denotes TNF
T6878 0-3 http://www.uniprot.org/uniprot/P01375 denotes TNF

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4495 351-356 Protein denotes cIAP2
T4494 306-346 Protein denotes cellular inhibitor of apoptosis (cIAP) 1
T4493 255-260 Protein denotes TRAF5
T4492 211-250 Protein denotes TNF receptor-associated factor (TRAF) 2
T4491 140-144 Protein denotes RIP1
T4490 108-138 Protein denotes receptor interacting protein 1
T4489 86-91 Protein denotes TRADD
T4488 46-84 Protein denotes TNF receptor-1-associated death domain
T4487 0-3 Protein denotes TNF

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T4452 255-260 Antecedent denotes TRAF5
T4451 211-250 Antecedent denotes TNF receptor-associated factor (TRAF) 2
T4450 262-267 Anaphor denotes which
T4449 108-138 Antecedent denotes receptor interacting protein 1
T4448 46-84 Antecedent denotes TNF receptor-1-associated death domain
T4447 147-152 Anaphor denotes which
R3025 T4447 T4448 boundBy which,TNF receptor-1-associated death domain
R3026 T4447 T4449 boundBy which,receptor interacting protein 1
R3027 T4450 T4451 boundBy which,TNF receptor-associated factor (TRAF) 2
R3028 T4450 T4452 boundBy which,TRAF5

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4920 366-367 -RRB- denotes )
T4919 365-366 CD denotes 1
T4918 358-364 NN denotes Figure
T4917 357-358 -LRB- denotes (
T4916 351-356 NN denotes cIAP2
T4915 347-350 CC denotes and
T4914 345-346 CD denotes 1
T4913 343-344 -RRB- denotes )
T4912 339-343 NN denotes cIAP
T4911 338-339 -LRB- denotes (
T4910 328-337 NN denotes apoptosis
T4909 325-327 IN denotes of
T4908 315-324 NN denotes inhibitor
T4907 306-314 JJ denotes cellular
T4906 298-305 NN denotes ligases
T4905 288-297 NN denotes ubiquitin
T4904 285-287 NN denotes E3
T4903 281-284 DT denotes the
T4902 276-280 VB denotes bind
T4901 271-275 NN denotes turn
T4900 268-270 IN denotes in
T4899 262-267 WDT denotes which
T4898 260-261 -COMMA- denotes ,
T4897 255-260 NN denotes TRAF5
T4896 251-254 CC denotes and
T4895 249-250 CD denotes 2
T4894 247-248 -RRB- denotes )
T4893 243-247 NN denotes TRAF
T4892 242-243 -LRB- denotes (
T4891 235-241 NN denotes factor
T4890 215-234 JJ denotes receptor-associated
T4889 211-214 NN denotes TNF
T4888 203-210 NN denotes ligases
T4887 193-202 NN denotes ubiquitin
T4886 190-192 NN denotes E3
T4885 186-189 DT denotes the
T4884 182-185 IN denotes for
T4883 173-181 NN denotes proteins
T4882 165-172 NN denotes adaptor
T4881 162-164 IN denotes as
T4880 153-161 VB denotes function
T4879 147-152 WDT denotes which
T4878 145-146 -COMMA- denotes ,
T4877 144-145 -RRB- denotes )
T4876 140-144 NN denotes RIP1
T4875 139-140 -LRB- denotes (
T4874 137-138 CD denotes 1
T4873 129-136 NN denotes protein
T4872 117-128 VB denotes interacting
T4871 108-116 NN denotes receptor
T4870 105-107 IN denotes of
T4869 101-104 CC denotes and
T4868 93-100 NN denotes protein
T4867 91-92 -RRB- denotes )
T4866 86-91 NN denotes TRADD
T4865 85-86 -LRB- denotes (
T4864 78-84 NN denotes domain
T4863 72-77 NN denotes death
T4862 50-71 JJ denotes receptor-1-associated
T4861 46-49 NN denotes TNF
T4860 43-45 IN denotes of
T4859 31-42 NN denotes recruitment
T4858 27-30 DT denotes the
T4857 24-26 IN denotes in
T4856 16-23 VB denotes results
T4855 4-15 NN denotes stimulation
T4854 0-3 NN denotes TNF
R3318 T4855 T4854 arg1Of stimulation,TNF
R3319 T4855 T4856 arg1Of stimulation,results
R3320 T4856 T4857 arg1Of results,in
R3321 T4859 T4860 arg1Of recruitment,of
R3322 T4859 T4870 arg1Of recruitment,of
R3323 T4859 T4878 arg1Of recruitment,","
R3324 T4859 T4879 arg1Of recruitment,which
R3325 T4859 T4880 arg1Of recruitment,function
R3326 T4859 T4896 arg1Of recruitment,and
R3327 T4860 T4869 arg1Of of,and
R3328 T4864 T4861 arg1Of domain,TNF
R3329 T4864 T4862 arg1Of domain,receptor-1-associated
R3330 T4864 T4863 arg1Of domain,death
R3331 T4864 T4865 arg1Of domain,(
R3332 T4866 T4865 arg2Of TRADD,(
R3333 T4867 T4865 arg3Of ),(
R3334 T4868 T4860 arg2Of protein,of
R3335 T4868 T4864 arg1Of protein,domain
R3336 T4870 T4869 arg2Of of,and
R3337 T4873 T4870 arg2Of protein,of
R3338 T4873 T4871 arg1Of protein,receptor
R3339 T4873 T4872 arg1Of protein,interacting
R3340 T4873 T4874 arg1Of protein,1
R3341 T4873 T4875 arg1Of protein,(
R3342 T4876 T4875 arg2Of RIP1,(
R3343 T4877 T4875 arg3Of ),(
R3344 T4880 T4881 arg1Of function,as
R3345 T4883 T4881 arg2Of proteins,as
R3346 T4883 T4882 arg1Of proteins,adaptor
R3347 T4883 T4884 arg1Of proteins,for
R3348 T4891 T4884 arg2Of factor,for
R3349 T4891 T4885 arg1Of factor,the
R3350 T4891 T4886 arg1Of factor,E3
R3351 T4891 T4887 arg1Of factor,ubiquitin
R3352 T4891 T4888 arg1Of factor,ligases
R3353 T4891 T4889 arg1Of factor,TNF
R3354 T4891 T4890 arg1Of factor,receptor-associated
R3355 T4891 T4892 arg1Of factor,(
R3356 T4891 T4895 arg1Of factor,2
R3357 T4893 T4892 arg2Of TRAF,(
R3358 T4894 T4892 arg3Of ),(
R3359 T4896 T4857 arg2Of and,in
R3360 T4896 T4858 arg1Of and,the
R3361 T4897 T4896 arg2Of TRAF5,and
R3362 T4897 T4898 arg1Of TRAF5,","
R3363 T4897 T4899 arg1Of TRAF5,which
R3364 T4897 T4902 arg1Of TRAF5,bind
R3365 T4901 T4900 arg2Of turn,in
R3366 T4902 T4900 arg1Of bind,in
R3367 T4908 T4902 arg2Of inhibitor,bind
R3368 T4908 T4903 arg1Of inhibitor,the
R3369 T4908 T4904 arg1Of inhibitor,E3
R3370 T4908 T4905 arg1Of inhibitor,ubiquitin
R3371 T4908 T4906 arg1Of inhibitor,ligases
R3372 T4908 T4907 arg1Of inhibitor,cellular
R3373 T4908 T4909 arg1Of inhibitor,of
R3374 T4910 T4911 arg1Of apoptosis,(
R3375 T4910 T4914 arg1Of apoptosis,1
R3376 T4910 T4915 arg1Of apoptosis,and
R3377 T4912 T4911 arg2Of cIAP,(
R3378 T4913 T4911 arg3Of ),(
R3379 T4915 T4909 arg2Of and,of
R3380 T4916 T4915 arg2Of cIAP2,and
R3381 T4916 T4917 arg1Of cIAP2,(
R3382 T4918 T4917 arg2Of Figure,(
R3383 T4918 T4919 arg1Of Figure,1
R3384 T4920 T4917 arg3Of ),(

GO-BP

Id Subject Object Predicate Lexical cue
T5569 328-337 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T5568 328-337 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T5567 306-314 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular
T5565 285-287 http://purl.obolibrary.org/obo/GO_0061667 denotes E3
T5564 190-192 http://purl.obolibrary.org/obo/GO_0061667 denotes E3
T5562 285-287 http://purl.obolibrary.org/obo/GO_0061666 denotes E3
T5561 190-192 http://purl.obolibrary.org/obo/GO_0061666 denotes E3
T5559 285-287 http://purl.obolibrary.org/obo/GO_0061665 denotes E3
T5558 190-192 http://purl.obolibrary.org/obo/GO_0061665 denotes E3
T5556 285-287 http://purl.obolibrary.org/obo/GO_0061664 denotes E3
T5555 190-192 http://purl.obolibrary.org/obo/GO_0061664 denotes E3
T5553 285-287 http://purl.obolibrary.org/obo/GO_0061663 denotes E3
T5552 190-192 http://purl.obolibrary.org/obo/GO_0061663 denotes E3
T5550 285-287 http://purl.obolibrary.org/obo/GO_0061662 denotes E3
T5549 190-192 http://purl.obolibrary.org/obo/GO_0061662 denotes E3
T5547 285-287 http://purl.obolibrary.org/obo/GO_0061661 denotes E3
T5546 190-192 http://purl.obolibrary.org/obo/GO_0061661 denotes E3
T5544 285-287 http://purl.obolibrary.org/obo/GO_0061660 denotes E3
T5543 190-192 http://purl.obolibrary.org/obo/GO_0061660 denotes E3
T5541 285-287 http://purl.obolibrary.org/obo/GO_0061659 denotes E3
T5540 190-192 http://purl.obolibrary.org/obo/GO_0061659 denotes E3
T5538 285-287 http://purl.obolibrary.org/obo/GO_0061630 denotes E3
T5537 190-192 http://purl.obolibrary.org/obo/GO_0061630 denotes E3
T5535 285-287 http://purl.obolibrary.org/obo/GO_0019787 denotes E3
T5534 190-192 http://purl.obolibrary.org/obo/GO_0019787 denotes E3
T5532 285-287 http://purl.obolibrary.org/obo/GO_0004842 denotes E3
T5531 190-192 http://purl.obolibrary.org/obo/GO_0004842 denotes E3
T5530 72-77 http://purl.obolibrary.org/obo/GO_0016265 denotes death

GO-MF

Id Subject Object Predicate Lexical cue
T5630 190-192 http://purl.obolibrary.org/obo/GO_0061660 denotes E3
T5628 285-287 http://purl.obolibrary.org/obo/GO_0061659 denotes E3
T5627 190-192 http://purl.obolibrary.org/obo/GO_0061659 denotes E3
T5625 285-287 http://purl.obolibrary.org/obo/GO_0061630 denotes E3
T5624 190-192 http://purl.obolibrary.org/obo/GO_0061630 denotes E3
T5622 285-287 http://purl.obolibrary.org/obo/GO_0019787 denotes E3
T5621 190-192 http://purl.obolibrary.org/obo/GO_0019787 denotes E3
T5619 285-287 http://purl.obolibrary.org/obo/GO_0004842 denotes E3
T5618 190-192 http://purl.obolibrary.org/obo/GO_0004842 denotes E3
T5655 288-297 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin
T5654 193-202 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin
T5652 285-287 http://purl.obolibrary.org/obo/GO_0061667 denotes E3
T5651 190-192 http://purl.obolibrary.org/obo/GO_0061667 denotes E3
T5649 285-287 http://purl.obolibrary.org/obo/GO_0061666 denotes E3
T5648 190-192 http://purl.obolibrary.org/obo/GO_0061666 denotes E3
T5646 285-287 http://purl.obolibrary.org/obo/GO_0061665 denotes E3
T5645 190-192 http://purl.obolibrary.org/obo/GO_0061665 denotes E3
T5643 285-287 http://purl.obolibrary.org/obo/GO_0061664 denotes E3
T5642 190-192 http://purl.obolibrary.org/obo/GO_0061664 denotes E3
T5640 285-287 http://purl.obolibrary.org/obo/GO_0061663 denotes E3
T5639 190-192 http://purl.obolibrary.org/obo/GO_0061663 denotes E3
T5637 285-287 http://purl.obolibrary.org/obo/GO_0061662 denotes E3
T5636 190-192 http://purl.obolibrary.org/obo/GO_0061662 denotes E3
T5634 285-287 http://purl.obolibrary.org/obo/GO_0061661 denotes E3
T5633 190-192 http://purl.obolibrary.org/obo/GO_0061661 denotes E3
T5631 285-287 http://purl.obolibrary.org/obo/GO_0061660 denotes E3

sentences

Id Subject Object Predicate Lexical cue
T4245 0-368 Sentence denotes TNF stimulation results in the recruitment of TNF receptor-1-associated death domain (TRADD) protein and of receptor interacting protein 1 (RIP1), which function as adaptor proteins for the E3 ubiquitin ligases TNF receptor-associated factor (TRAF) 2 and TRAF5, which in turn bind the E3 ubiquitin ligases cellular inhibitor of apoptosis (cIAP) 1 and cIAP2 (Figure 1).
T57 0-368 Sentence denotes TNF stimulation results in the recruitment of TNF receptor-1-associated death domain (TRADD) protein and of receptor interacting protein 1 (RIP1), which function as adaptor proteins for the E3 ubiquitin ligases TNF receptor-associated factor (TRAF) 2 and TRAF5, which in turn bind the E3 ubiquitin ligases cellular inhibitor of apoptosis (cIAP) 1 and cIAP2 (Figure 1).

simple1

Id Subject Object Predicate Lexical cue
T5824 351-356 Protein denotes cIAP2
T5823 306-346 Protein denotes cellular inhibitor of apoptosis (cIAP) 1
T5822 255-260 Protein denotes TRAF5
T5821 211-250 Protein denotes TNF receptor-associated factor (TRAF) 2
T5820 140-144 Protein denotes RIP1
T5819 108-138 Protein denotes receptor interacting protein 1
T5818 86-91 Protein denotes TRADD
T5817 46-84 Protein denotes TNF receptor-1-associated death domain
T5816 0-3 Protein denotes TNF

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7933 276-280 Binding denotes bind
T7932 4-15 Negative_regulation denotes stimulation
T7931 16-23 Positive_regulation denotes results
T7930 31-42 Binding denotes recruitment
T7853 351-356 Protein denotes cIAP2
T7852 306-346 Protein denotes cellular inhibitor of apoptosis (cIAP) 1
T7851 255-260 Protein denotes TRAF5
T7850 211-250 Protein denotes TNF receptor-associated factor (TRAF) 2
T7849 140-144 Protein denotes RIP1
T7848 108-138 Protein denotes receptor interacting protein 1
T7847 86-91 Protein denotes TRADD
T7846 46-84 Protein denotes TNF receptor-1-associated death domain
T7845 0-3 Protein denotes TNF
R5435 T7845 T7932 themeOf TNF,stimulation
R5437 T7846 T7930 themeOf TNF receptor-1-associated death domain,recruitment
R5438 T7847 T7930 themeOf TRADD,recruitment
R5439 T7848 T7930 themeOf receptor interacting protein 1,recruitment
R5441 T7849 T7930 themeOf RIP1,recruitment
R5443 T7851 T7933 themeOf TRAF5,bind
R5444 T7851 T7933 themeOf TRAF5,bind
R5446 T7852 T7933 themeOf cellular inhibitor of apoptosis (cIAP) 1,bind
R5447 T7853 T7933 themeOf cIAP2,bind
R5538 T7930 T7931 themeOf recruitment,results
R5540 T7930 T7931 themeOf recruitment,results
R5541 T7930 T7931 themeOf recruitment,results
R5542 T7930 T7931 themeOf recruitment,results

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7055 276-280 Binding denotes bind
T7054 31-42 Binding denotes recruitment
T6976 351-356 Protein denotes cIAP2
T6975 306-346 Protein denotes cellular inhibitor of apoptosis (cIAP) 1
T6974 255-260 Protein denotes TRAF5
T6973 211-250 Protein denotes TNF receptor-associated factor (TRAF) 2
T6972 140-144 Protein denotes RIP1
T6971 108-138 Protein denotes receptor interacting protein 1
T6970 86-91 Protein denotes TRADD
T6969 46-84 Protein denotes TNF receptor-1-associated death domain
T6968 0-3 Protein denotes TNF
R4909 T6969 T7054 themeOf TNF receptor-1-associated death domain,recruitment
R4910 T6970 T7054 themeOf TRADD,recruitment
R4911 T6971 T7054 themeOf receptor interacting protein 1,recruitment
R4913 T6972 T7054 themeOf RIP1,recruitment
R4915 T6975 T7055 themeOf cellular inhibitor of apoptosis (cIAP) 1,bind
R4916 T6976 T7055 themeOf cIAP2,bind

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8183 0-15 Positive_regulation denotes TNF stimulation
T8179 262-356 Binding denotes which in turn bind the E3 ubiquitin ligases cellular inhibitor of apoptosis (cIAP) 1 and cIAP2
T8178 262-356 Binding denotes which in turn bind the E3 ubiquitin ligases cellular inhibitor of apoptosis (cIAP) 1 and cIAP2
T8169 24-100 Binding denotes in the recruitment of TNF receptor-1-associated death domain (TRADD) protein
T8167 281-346 Protein denotes the E3 ubiquitin ligases cellular inhibitor of apoptosis (cIAP) 1
T8137 46-92 Protein denotes TNF receptor-1-associated death domain (TRADD)
T8130 0-3 Protein denotes TNF
T8126 193-202 Protein denotes ubiquitin
T8125 140-144 Protein denotes RIP1
T8124 43-100 Protein denotes of TNF receptor-1-associated death domain (TRADD) protein
T8115 186-250 Protein denotes the E3 ubiquitin ligases TNF receptor-associated factor (TRAF) 2
T8062 108-146 Protein denotes receptor interacting protein 1 (RIP1),
T8060 186-250 Protein denotes the E3 ubiquitin ligases TNF receptor-associated factor (TRAF) 2
T8050 288-297 Protein denotes ubiquitin
T8024 255-261 Protein denotes TRAF5,
T8015 281-346 Protein denotes the E3 ubiquitin ligases cellular inhibitor of apoptosis (cIAP) 1
T8009 173-261 Protein denotes proteins for the E3 ubiquitin ligases TNF receptor-associated factor (TRAF) 2 and TRAF5,
T7983 351-356 Protein denotes cIAP2
T7976 86-91 Protein denotes TRADD
R5471 T7983 T8179 themeOf cIAP2,which in turn bind the E3 ubiquitin ligases cellular inhibitor of apoptosis (cIAP) 1 and cIAP2
R5491 T8015 T8178 themeOf the E3 ubiquitin ligases cellular inhibitor of apoptosis (cIAP) 1,which in turn bind the E3 ubiquitin ligases cellular inhibitor of apoptosis (cIAP) 1 and cIAP2
R5554 T8124 T8169 themeOf of TNF receptor-1-associated death domain (TRADD) protein,in the recruitment of TNF receptor-1-associated death domain (TRADD) protein
R5555 T8130 T8183 themeOf TNF,TNF stimulation

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7435 224-234 Binding denotes associated
T7434 224-234 Binding denotes associated
T7433 31-42 Binding denotes recruitment
T7432 31-42 Binding denotes recruitment
T7431 31-42 Binding denotes recruitment
T7430 31-42 Binding denotes recruitment
T7429 31-42 Binding denotes recruitment
T7428 31-42 Binding denotes recruitment
T7427 288-305 Protein denotes ubiquitin ligases
T7426 285-287 Protein denotes E3
T7425 255-260 Protein denotes TRAF5
T7424 211-223 Protein denotes TNF receptor
T7423 190-202 Protein denotes E3 ubiquitin
T7422 140-144 Protein denotes RIP1
T7421 108-138 Protein denotes receptor interacting protein 1
T7420 86-91 Protein denotes TRADD
T7419 46-84 Protein denotes TNF receptor-1-associated death domain
T7418 0-3 Protein denotes TNF
R5188 T7419 T7431 themeOf TNF receptor-1-associated death domain,recruitment
R5189 T7420 T7428 themeOf TRADD,recruitment
R5193 T7420 T7432 themeOf TRADD,recruitment
R5195 T7420 T7433 themeOf TRADD,recruitment
R5196 T7421 T7429 themeOf receptor interacting protein 1,recruitment
R5202 T7421 T7432 themeOf receptor interacting protein 1,recruitment
R5204 T7422 T7430 themeOf RIP1,recruitment
R5215 T7422 T7431 themeOf RIP1,recruitment
R5216 T7422 T7433 themeOf RIP1,recruitment
R5217 T7422 T7434 themeOf RIP1,associated
R5219 T7424 T7434 themeOf TNF receptor,associated
R5221 T7424 T7435 themeOf TNF receptor,associated
R5223 T7425 T7435 themeOf TRAF5,associated

test3

Id Subject Object Predicate Lexical cue
T4133 211-250 Protein denotes TNF receptor-associated factor (TRAF) 2
T4132 140-144 Protein denotes RIP1
T4131 108-138 Protein denotes receptor interacting protein 1
T4130 86-91 Protein denotes TRADD
T4129 46-84 Protein denotes TNF receptor-1-associated death domain
T4128 31-42 Binding denotes recruitment
T4127 0-3 Protein denotes TNF
T4018 351-356 Protein denotes cIAP2
T4017 306-346 Protein denotes cellular inhibitor of apoptosis (cIAP) 1
T4016 255-260 Protein denotes TRAF5
T4015 211-250 Protein denotes TNF receptor-associated factor (TRAF) 2
T4014 140-144 Protein denotes RIP1
T4013 108-138 Protein denotes receptor interacting protein 1
T4012 86-91 Protein denotes TRADD
T4011 46-84 Protein denotes TNF receptor-1-associated death domain
T4010 0-3 Protein denotes TNF
T4137 351-356 Protein denotes cIAP2
T4136 306-346 Protein denotes cellular inhibitor of apoptosis (cIAP) 1
T4135 276-280 Binding denotes bind
T4134 255-260 Protein denotes TRAF5
R2846 T4129 T4128 themeOf TNF receptor-1-associated death domain,recruitment
R2847 T4130 T4129 equivalentTo TRADD,TNF receptor-1-associated death domain
R2848 T4131 T4129 equivalentTo receptor interacting protein 1,TNF receptor-1-associated death domain
R2849 T4131 T4135 themeOf receptor interacting protein 1,bind
R2850 T4131 T4128 themeOf receptor interacting protein 1,recruitment
R2851 T4132 T4129 equivalentTo RIP1,TNF receptor-1-associated death domain
R2852 T4132 T4131 equivalentTo RIP1,receptor interacting protein 1
R2853 T4133 T4131 equivalentTo TNF receptor-associated factor (TRAF) 2,receptor interacting protein 1
R2854 T4134 T4135 themeOf TRAF5,bind
R2855 T4134 T4128 themeOf TRAF5,recruitment
R2856 T4136 T4135 themeOf cellular inhibitor of apoptosis (cIAP) 1,bind
R2857 T4137 T4135 themeOf cIAP2,bind