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PMC:3148254 / 8917-9082 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T4185 0-10 Binding denotes Engagement
T4186 14-18 Protein denotes CD40
T4187 30-41 Positive_regulation denotes upregulates
T4188 42-52 Gene_expression denotes expression
T4189 56-60 Protein denotes CD80
R3216 T4185 T4187 causeOf Engagement,upregulates
R3217 T4186 T4185 themeOf CD40,Engagement
R3218 T4188 T4187 themeOf expression,upregulates
R3219 T4189 T4188 themeOf CD80,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T5268 14-18 Protein denotes CD40
T5269 56-60 Protein denotes CD80
T5270 0-10 Binding denotes Engagement
T5271 42-52 Gene_expression denotes expression
T5272 30-41 Positive_regulation denotes upregulates
R4088 T5268 T5270 themeOf CD40,Engagement
R4089 T5269 T5271 themeOf CD80,expression
R4090 T5270 T5272 causeOf Engagement,upregulates
R4091 T5271 T5272 themeOf expression,upregulates

events-check-again

Id Subject Object Predicate Lexical cue
T5328 0-10 Binding denotes Engagement
T5329 14-18 Protein denotes CD40
T5330 30-41 Positive_regulation denotes upregulates
T5331 42-52 Gene_expression denotes expression
T5332 56-60 Protein denotes CD80
R4118 T5328 T5330 causeOf Engagement,upregulates
R4119 T5329 T5328 themeOf CD40,Engagement
R4120 T5331 T5330 themeOf expression,upregulates
R4121 T5332 T5331 themeOf CD80,expression

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4652 0-10 NN denotes Engagement
T4653 11-13 IN denotes of
T4654 14-18 NN denotes CD40
T4655 19-21 IN denotes on
T4656 22-23 NN denotes B
T4657 24-29 NN denotes cells
T4658 30-41 VB denotes upregulates
T4659 42-52 NN denotes expression
T4660 53-55 IN denotes of
T4661 56-60 NN denotes CD80
T4662 61-62 -LRB- denotes [
T4663 62-64 CD denotes 10
T4664 64-65 -RRB- denotes ]
T4665 65-66 -COMMA- denotes ,
T4666 67-68 DT denotes a
T4667 69-73 NN denotes cell
T4668 74-81 NN denotes surface
T4669 82-89 NN denotes protein
T4670 90-94 WDT denotes that
T4671 95-103 VB denotes promotes
T4672 104-114 NN denotes activation
T4673 115-117 IN denotes of
T4674 118-119 NN denotes T
T4675 120-125 NN denotes cells
T4676 126-137 VB denotes interacting
T4677 138-142 IN denotes with
T4678 143-144 NN denotes B
T4679 145-150 NN denotes cells
T4680 151-154 CC denotes and
T4681 155-160 JJ denotes other
T4682 161-164 NN denotes APC
R3642 T4652 T4653 arg1Of Engagement,of
R3643 T4652 T4655 arg1Of Engagement,on
R3644 T4652 T4658 arg1Of Engagement,upregulates
R3645 T4654 T4653 arg2Of CD40,of
R3646 T4657 T4655 arg2Of cells,on
R3647 T4657 T4656 arg1Of cells,B
R3648 T4659 T4658 arg2Of expression,upregulates
R3649 T4659 T4660 arg1Of expression,of
R3650 T4661 T4660 arg2Of CD80,of
R3651 T4661 T4662 arg1Of CD80,[
R3652 T4661 T4665 arg1Of CD80,","
R3653 T4663 T4662 arg2Of 10,[
R3654 T4664 T4662 arg3Of ],[
R3655 T4669 T4665 arg2Of protein,","
R3656 T4669 T4666 arg1Of protein,a
R3657 T4669 T4667 arg1Of protein,cell
R3658 T4669 T4668 arg1Of protein,surface
R3659 T4669 T4670 arg1Of protein,that
R3660 T4669 T4671 arg1Of protein,promotes
R3661 T4672 T4673 arg1Of activation,of
R3662 T4672 T4680 arg1Of activation,and
R3663 T4675 T4673 arg2Of cells,of
R3664 T4675 T4674 arg1Of cells,T
R3665 T4675 T4676 arg1Of cells,interacting
R3666 T4676 T4677 arg1Of interacting,with
R3667 T4679 T4677 arg2Of cells,with
R3668 T4679 T4678 arg1Of cells,B
R3669 T4680 T4671 arg2Of and,promotes
R3670 T4682 T4680 arg2Of APC,and
R3671 T4682 T4681 arg1Of APC,other

2_test

Id Subject Object Predicate Lexical cue
21829693-7681471-89653762 62-64 7681471 denotes 10
T72061 62-64 7681471 denotes 10

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4272 0-10 NNP denotes Engagement
T4273 11-13 IN denotes of
T4274 14-18 NNP denotes CD40
T4275 19-21 IN denotes on
T4276 22-23 NNP denotes B
T4277 24-29 NNS denotes cells
T4278 30-41 VBZ denotes upregulates
T4279 42-52 NN denotes expression
T4280 53-55 IN denotes of
T4281 56-60 NNP denotes CD80
T4282 61-62 NNP denotes [
T4283 62-64 CD denotes 10
T4284 64-65 NNP denotes ]
T4285 65-66 , denotes ,
T4286 67-68 DT denotes a
T4287 69-73 NN denotes cell
T4288 74-81 NN denotes surface
T4289 82-89 NN denotes protein
T4290 90-94 WDT denotes that
T4291 95-103 VBZ denotes promotes
T4292 104-114 NN denotes activation
T4293 115-117 IN denotes of
T4294 118-119 NNP denotes T
T4295 120-125 NNS denotes cells
T4296 126-137 VBG denotes interacting
T4297 138-142 IN denotes with
T4298 143-144 NNP denotes B
T4299 145-150 NNS denotes cells
T4300 151-154 CC denotes and
T4301 155-160 JJ denotes other
T4302 161-164 NNP denotes APC
T4303 164-165 . denotes .
R3263 T4273 T4272 prep of,Engagement
R3264 T4274 T4273 pobj CD40,of
R3265 T4275 T4272 prep on,Engagement
R3266 T4276 T4277 compound B,cells
R3267 T4277 T4275 pobj cells,on
R3268 T4278 T4279 compound upregulates,expression
R3270 T4280 T4279 prep of,expression
R3271 T4281 T4282 compound CD80,[
R3272 T4282 T4280 pobj [,of
R3273 T4283 T4284 nummod 10,]
R3274 T4284 T4279 appos ],expression
R3275 T4285 T4284 punct ",",]
R3276 T4286 T4289 det a,protein
R3277 T4287 T4288 compound cell,surface
R3278 T4288 T4289 compound surface,protein
R3279 T4289 T4279 appos protein,expression
R3280 T4290 T4291 nsubj that,promotes
R3281 T4291 T4289 relcl promotes,protein
R3282 T4292 T4291 dobj activation,promotes
R3283 T4293 T4292 prep of,activation
R3284 T4294 T4295 compound T,cells
R3285 T4295 T4293 pobj cells,of
R3286 T4296 T4295 acl interacting,cells
R3287 T4297 T4296 prep with,interacting
R3288 T4298 T4299 compound B,cells
R3289 T4299 T4297 pobj cells,with
R3290 T4300 T4299 cc and,cells
R3291 T4301 T4302 amod other,APC
R3292 T4302 T4299 conj APC,cells

GO-BP

Id Subject Object Predicate Lexical cue
T5071 69-89 http://purl.obolibrary.org/obo/GO_0033580 denotes cell surface protein
T5072 69-89 http://purl.obolibrary.org/obo/GO_0034394 denotes cell surface protein
T5073 69-89 http://purl.obolibrary.org/obo/GO_0033575 denotes cell surface protein

GO-CC

Id Subject Object Predicate Lexical cue
T5097 24-29 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T5098 120-125 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T5099 145-150 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T5109 69-81 http://purl.obolibrary.org/obo/GO_0009986 denotes cell surface
T5110 161-164 http://purl.obolibrary.org/obo/GO_0005680 denotes APC

sentences

Id Subject Object Predicate Lexical cue
T4246 0-165 Sentence denotes Engagement of CD40 on B cells upregulates expression of CD80 [10], a cell surface protein that promotes activation of T cells interacting with B cells and other APC.
T63 0-165 Sentence denotes Engagement of CD40 on B cells upregulates expression of CD80 [10], a cell surface protein that promotes activation of T cells interacting with B cells and other APC.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5006 14-18 P25942 denotes CD40
T5007 56-60 P33681 denotes CD80

test2

Id Subject Object Predicate Lexical cue Speculation
T4112 0-10 Binding denotes Engagement
T4113 14-18 Protein denotes CD40
T4114 30-41 Positive_regulation denotes upregulates
T4115 42-52 Gene_expression denotes expression
T4116 56-60 Protein denotes CD80 true
R3168 T4112 T4114 causeOf Engagement,upregulates
R3169 T4113 T4112 themeOf CD40,Engagement
R3170 T4115 T4114 themeOf expression,upregulates
R3171 T4116 T4115 themeOf CD80,expression