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PMC:3148254 / 8263-8554 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T2849 77-81 Protein denotes HOIP
T2850 82-91 Negative_regulation denotes deficient
T2851 110-120 Negative_regulation denotes disruption
T2852 128-133 Protein denotes Rnf31
T2853 145-149 Protein denotes HOIP
T2854 150-159 Negative_regulation denotes deficient
T2855 236-240 Protein denotes HOIP
T2856 247-256 Positive_regulation denotes restoring
T2857 257-261 Protein denotes HOIP
T2858 270-280 Gene_expression denotes expression
R2118 T2849 T2850 themeOf HOIP,deficient
R2119 T2852 T2851 themeOf Rnf31,disruption
R2120 T2853 T2854 themeOf HOIP,deficient
R2121 T2857 T2858 themeOf HOIP,expression
R2122 T2858 T2856 themeOf expression,restoring

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T3979 128-138 Protein denotes Rnf31 gene
T3980 257-269 Protein denotes HOIP protein
T3981 110-120 Negative_regulation denotes disruption
T3982 270-280 Gene_expression denotes expression
R3094 T3979 T3981 themeOf Rnf31 gene,disruption
R3095 T3980 T3982 themeOf HOIP protein,expression

events-check-again

Id Subject Object Predicate Lexical cue
T4020 77-81 Protein denotes HOIP
T4021 82-91 Negative_regulation denotes deficient
T4022 110-120 Negative_regulation denotes disruption
T4023 128-133 Protein denotes Rnf31
T4024 145-149 Protein denotes HOIP
T4025 150-159 Negative_regulation denotes deficient
T4026 236-240 Protein denotes HOIP
T4027 247-256 Positive_regulation denotes restoring
T4028 257-261 Protein denotes HOIP
T4029 270-280 Gene_expression denotes expression
R3103 T4020 T4021 themeOf HOIP,deficient
R3106 T4023 T4022 themeOf Rnf31,disruption
R3109 T4024 T4025 themeOf HOIP,deficient
R3114 T4028 T4029 themeOf HOIP,expression
R3115 T4029 T4027 themeOf expression,restoring

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3691 0-2 TO denotes To
T3692 3-9 VB denotes enable
T3693 10-12 PRP denotes us
T3694 13-15 TO denotes to
T3695 16-23 VB denotes confirm
T3696 24-28 IN denotes that
T3697 29-32 DT denotes any
T3698 33-42 NN denotes signaling
T3699 43-45 CC denotes or
T3700 46-56 JJ denotes functional
T3701 57-64 NN denotes defects
T3702 65-73 VB denotes observed
T3703 74-76 IN denotes in
T3704 77-91 JJ denotes HOIP-deficient
T3705 92-97 NN denotes cells
T3706 98-102 VB denotes were
T3707 103-106 JJ denotes due
T3708 107-109 TO denotes to
T3709 110-120 NN denotes disruption
T3710 121-123 IN denotes of
T3711 124-127 DT denotes the
T3712 128-133 NN denotes Rnf31
T3713 134-138 NN denotes gene
T3714 138-139 -COMMA- denotes ,
T3715 140-144 DT denotes both
T3716 145-159 JJ denotes HOIP-deficient
T3717 160-164 NN denotes cell
T3718 165-170 NN denotes lines
T3719 171-175 VB denotes were
T3720 176-186 VB denotes transduced
T3721 187-191 IN denotes with
T3722 192-193 DT denotes a
T3723 194-204 NN denotes retrovirus
T3724 205-213 VB denotes encoding
T3725 214-225 JJ denotes FLAG-tagged
T3726 226-235 JJ denotes wild-type
T3727 236-240 NN denotes HOIP
T3728 240-241 -COMMA- denotes ,
T3729 242-246 RB denotes thus
T3730 247-256 VB denotes restoring
T3731 257-261 NN denotes HOIP
T3732 262-269 NN denotes protein
T3733 270-280 NN denotes expression
T3734 281-282 -LRB- denotes (
T3735 282-286 NN denotes Fig.
T3736 287-289 NN denotes 1B
T3737 289-290 -RRB- denotes )
R2943 T3692 T3691 arg1Of enable,To
R2944 T3693 T3692 arg2Of us,enable
R2945 T3693 T3695 arg1Of us,confirm
R2946 T3695 T3692 arg3Of confirm,enable
R2947 T3695 T3694 arg1Of confirm,to
R2948 T3698 T3699 arg1Of signaling,or
R2949 T3700 T3699 arg2Of functional,or
R2950 T3701 T3697 arg1Of defects,any
R2951 T3701 T3698 arg1Of defects,signaling
R2952 T3701 T3700 arg1Of defects,functional
R2953 T3701 T3702 arg2Of defects,observed
R2954 T3701 T3706 arg1Of defects,were
R2955 T3701 T3707 arg1Of defects,due
R2956 T3702 T3703 arg1Of observed,in
R2957 T3705 T3703 arg2Of cells,in
R2958 T3705 T3704 arg1Of cells,HOIP-deficient
R2959 T3706 T3695 arg2Of were,confirm
R2960 T3706 T3696 arg1Of were,that
R2961 T3707 T3706 arg2Of due,were
R2962 T3707 T3708 arg1Of due,to
R2963 T3709 T3708 arg2Of disruption,to
R2964 T3709 T3710 arg1Of disruption,of
R2965 T3713 T3710 arg2Of gene,of
R2966 T3713 T3711 arg1Of gene,the
R2967 T3713 T3712 arg1Of gene,Rnf31
R2968 T3718 T3715 arg1Of lines,both
R2969 T3718 T3716 arg1Of lines,HOIP-deficient
R2970 T3718 T3717 arg1Of lines,cell
R2971 T3718 T3719 arg1Of lines,were
R2972 T3718 T3720 arg2Of lines,transduced
R2973 T3718 T3730 arg1Of lines,restoring
R2974 T3720 T3691 modOf transduced,To
R2975 T3720 T3714 arg1Of transduced,","
R2976 T3720 T3719 arg2Of transduced,were
R2977 T3720 T3721 arg1Of transduced,with
R2978 T3720 T3728 arg1Of transduced,","
R2979 T3720 T3729 arg1Of transduced,thus
R2980 T3720 T3730 modOf transduced,restoring
R2981 T3723 T3721 arg2Of retrovirus,with
R2982 T3723 T3722 arg1Of retrovirus,a
R2983 T3723 T3724 arg1Of retrovirus,encoding
R2984 T3727 T3724 arg2Of HOIP,encoding
R2985 T3727 T3725 arg1Of HOIP,FLAG-tagged
R2986 T3727 T3726 arg1Of HOIP,wild-type
R2987 T3733 T3730 arg2Of expression,restoring
R2988 T3733 T3731 arg1Of expression,HOIP
R2989 T3733 T3732 arg1Of expression,protein
R2990 T3733 T3734 arg1Of expression,(
R2991 T3736 T3734 arg2Of 1B,(
R2992 T3736 T3735 arg1Of 1B,Fig.
R2993 T3737 T3734 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3245 0-2 TO denotes To
T3246 3-9 VB denotes enable
T3247 10-12 PRP denotes us
T3248 13-15 TO denotes to
T3249 16-23 VB denotes confirm
T3250 24-28 IN denotes that
T3251 29-32 DT denotes any
T3252 33-42 VBG denotes signaling
T3253 43-45 CC denotes or
T3254 46-56 JJ denotes functional
T3255 57-64 NNS denotes defects
T3256 65-73 VBD denotes observed
T3257 74-76 IN denotes in
T3258 77-91 JJ denotes HOIP-deficient
T3259 92-97 NNS denotes cells
T3260 98-102 VBD denotes were
T3261 103-106 JJ denotes due
T3262 107-109 TO denotes to
T3263 110-120 NN denotes disruption
T3264 121-123 IN denotes of
T3265 124-127 DT denotes the
T3266 128-133 NNP denotes Rnf31
T3267 134-138 NN denotes gene
T3268 138-139 , denotes ,
T3269 140-144 DT denotes both
T3270 145-159 JJ denotes HOIP-deficient
T3271 160-164 NN denotes cell
T3272 165-170 NNS denotes lines
T3273 171-175 VBD denotes were
T3274 176-186 VBN denotes transduced
T3275 187-191 IN denotes with
T3276 192-193 DT denotes a
T3277 194-204 NN denotes retrovirus
T3278 205-213 VBG denotes encoding
T3279 214-225 JJ denotes FLAG-tagged
T3280 226-235 JJ denotes wild-type
T3281 236-240 NNP denotes HOIP
T3282 240-241 , denotes ,
T3283 242-246 RB denotes thus
T3284 247-256 VBG denotes restoring
T3285 257-261 NNP denotes HOIP
T3286 262-269 NN denotes protein
T3287 270-280 NN denotes expression
T3288 281-282 -LRB- denotes (
T3289 282-286 NNP denotes Fig.
T3290 287-289 NNP denotes 1B
T3291 289-290 -RRB- denotes )
T3292 290-291 . denotes .
R2490 T3245 T3246 aux To,enable
R2491 T3246 T3274 advcl enable,transduced
R2492 T3247 T3246 dobj us,enable
R2493 T3248 T3249 aux to,confirm
R2494 T3249 T3246 xcomp confirm,enable
R2495 T3250 T3260 mark that,were
R2496 T3251 T3252 det any,signaling
R2497 T3252 T3260 nsubj signaling,were
R2498 T3253 T3252 cc or,signaling
R2499 T3254 T3255 amod functional,defects
R2500 T3255 T3256 nsubj defects,observed
R2501 T3256 T3252 conj observed,signaling
R2502 T3257 T3256 prep in,observed
R2503 T3258 T3259 amod HOIP-deficient,cells
R2504 T3259 T3257 pobj cells,in
R2505 T3260 T3249 ccomp were,confirm
R2506 T3261 T3260 acomp due,were
R2507 T3262 T3261 prep to,due
R2508 T3263 T3262 pobj disruption,to
R2509 T3264 T3263 prep of,disruption
R2510 T3265 T3267 det the,gene
R2511 T3266 T3267 compound Rnf31,gene
R2512 T3267 T3264 pobj gene,of
R2513 T3268 T3274 punct ",",transduced
R2514 T3269 T3272 det both,lines
R2515 T3270 T3272 amod HOIP-deficient,lines
R2516 T3271 T3272 compound cell,lines
R2517 T3272 T3274 nsubjpass lines,transduced
R2518 T3273 T3274 auxpass were,transduced
R2519 T3274 T3274 ROOT transduced,transduced
R2520 T3275 T3274 prep with,transduced
R2521 T3276 T3277 det a,retrovirus
R2522 T3277 T3278 nsubj retrovirus,encoding
R2523 T3278 T3281 amod encoding,HOIP
R2524 T3279 T3281 compound FLAG-tagged,HOIP
R2525 T3280 T3281 compound wild-type,HOIP
R2526 T3281 T3275 pobj HOIP,with
R2527 T3282 T3274 punct ",",transduced
R2528 T3283 T3284 advmod thus,restoring
R2529 T3284 T3274 advcl restoring,transduced
R2530 T3285 T3287 compound HOIP,expression
R2531 T3286 T3287 compound protein,expression
R2532 T3287 T3284 dobj expression,restoring
R2533 T3288 T3290 punct (,1B
R2534 T3289 T3290 compound Fig.,1B
R2535 T3290 T3284 appos 1B,restoring
R2536 T3291 T3290 punct ),1B
R2537 T3292 T3274 punct .,transduced

GO-BP

Id Subject Object Predicate Lexical cue
T3838 33-42 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T3845 92-97 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T2877 0-291 Sentence denotes To enable us to confirm that any signaling or functional defects observed in HOIP-deficient cells were due to disruption of the Rnf31 gene, both HOIP-deficient cell lines were transduced with a retrovirus encoding FLAG-tagged wild-type HOIP, thus restoring HOIP protein expression (Fig. 1B).
T59 0-291 Sentence denotes To enable us to confirm that any signaling or functional defects observed in HOIP-deficient cells were due to disruption of the Rnf31 gene, both HOIP-deficient cell lines were transduced with a retrovirus encoding FLAG-tagged wild-type HOIP, thus restoring HOIP protein expression (Fig. 1B).

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3810 77-81 Q96EP0 denotes HOIP
T3811 128-133 Q96EP0 denotes Rnf31
T3812 145-149 Q96EP0 denotes HOIP
T3813 236-240 Q96EP0 denotes HOIP
T3814 257-261 Q96EP0 denotes HOIP

test2

Id Subject Object Predicate Lexical cue
T2799 77-81 Protein denotes HOIP
T2800 82-91 Negative_regulation denotes deficient
T2801 110-120 Negative_regulation denotes disruption
T2802 128-133 Protein denotes Rnf31
T2803 145-149 Protein denotes HOIP
T2804 150-159 Negative_regulation denotes deficient
T2805 236-240 Protein denotes HOIP
T2806 247-256 Negative_regulation denotes restoring
T2807 257-261 Protein denotes HOIP
T2808 270-280 Gene_expression denotes expression
R2095 T2799 T2800 themeOf HOIP,deficient
R2096 T2802 T2801 themeOf Rnf31,disruption
R2097 T2803 T2804 themeOf HOIP,deficient
R2098 T2807 T2808 themeOf HOIP,expression
R2099 T2808 T2806 themeOf expression,restoring