PMC:3148254 / 752-967
Annnotations
bionlp-st-ge-2016-reference-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T905 | 81-85 | Protein | denotes | CD40 |
| T906 | 127-157 | Protein | denotes | TNF receptor-associated factor |
| T907 | 159-163 | Protein | denotes | TRAF |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T533 | 0-9 | NN | denotes | signaling |
| T534 | 10-16 | NN | denotes | events |
| T535 | 17-21 | VB | denotes | have |
| T536 | 22-26 | VB | denotes | been |
| T537 | 27-31 | RB | denotes | only |
| T538 | 32-41 | RB | denotes | partially |
| T539 | 42-55 | VB | denotes | characterized |
| T540 | 57-62 | VB | denotes | Known |
| T541 | 63-73 | NN | denotes | components |
| T542 | 74-76 | IN | denotes | of |
| T543 | 77-80 | DT | denotes | the |
| T544 | 81-85 | NN | denotes | CD40 |
| T545 | 86-95 | NN | denotes | signaling |
| T546 | 96-103 | NN | denotes | complex |
| T547 | 104-111 | VB | denotes | include |
| T548 | 112-119 | NN | denotes | members |
| T549 | 120-122 | IN | denotes | of |
| T550 | 123-126 | DT | denotes | the |
| T551 | 127-130 | NN | denotes | TNF |
| T552 | 131-150 | JJ | denotes | receptor-associated |
| T553 | 151-157 | NN | denotes | factor |
| T554 | 158-159 | -LRB- | denotes | ( |
| T555 | 159-163 | NN | denotes | TRAF |
| T556 | 163-164 | -RRB- | denotes | ) |
| T557 | 165-171 | NN | denotes | family |
| T558 | 172-174 | IN | denotes | of |
| T559 | 175-183 | NN | denotes | proteins |
| T560 | 185-187 | PRP | denotes | We |
| T561 | 188-198 | RB | denotes | previously |
| T562 | 199-205 | VB | denotes | showed |
| T563 | 206-210 | IN | denotes | that |
| T564 | 211-214 | DT | denotes | the |
| R453 | T534 | T533 | arg1Of | events,signaling |
| R454 | T538 | T537 | arg1Of | partially,only |
| R457 | T539 | T535 | arg2Of | characterized,have |
| R458 | T539 | T536 | arg2Of | characterized,been |
| R459 | T539 | T538 | arg1Of | characterized,partially |
| R460 | T541 | T540 | arg2Of | components,Known |
| R461 | T541 | T542 | arg1Of | components,of |
| R462 | T541 | T547 | arg1Of | components,include |
| R463 | T546 | T542 | arg2Of | complex,of |
| R464 | T546 | T543 | arg1Of | complex,the |
| R465 | T546 | T544 | arg1Of | complex,CD40 |
| R466 | T546 | T545 | arg1Of | complex,signaling |
| R467 | T548 | T547 | arg2Of | members,include |
| R468 | T548 | T549 | arg1Of | members,of |
| R469 | T553 | T551 | arg1Of | factor,TNF |
| R470 | T553 | T552 | arg1Of | factor,receptor-associated |
| R471 | T553 | T554 | arg1Of | factor,( |
| R472 | T555 | T554 | arg2Of | TRAF,( |
| R473 | T556 | T554 | arg3Of | ),( |
| R474 | T557 | T549 | arg2Of | family,of |
| R475 | T557 | T550 | arg1Of | family,the |
| R476 | T557 | T553 | arg1Of | family,factor |
| R477 | T557 | T558 | arg1Of | family,of |
| R478 | T559 | T558 | arg2Of | proteins,of |
| R479 | T560 | T562 | arg1Of | We,showed |
| R480 | T562 | T561 | arg1Of | showed,previously |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T247 | 0-9 | VBG | denotes | signaling |
| T248 | 10-16 | NNS | denotes | events |
| T249 | 17-21 | VBP | denotes | have |
| T250 | 22-26 | VBN | denotes | been |
| T251 | 27-31 | RB | denotes | only |
| T252 | 32-41 | RB | denotes | partially |
| T253 | 42-55 | VBN | denotes | characterized |
| T254 | 55-56 | . | denotes | . |
| T255 | 57-62 | VBN | denotes | Known |
| T256 | 63-73 | NNS | denotes | components |
| T257 | 74-76 | IN | denotes | of |
| T258 | 77-80 | DT | denotes | the |
| T259 | 81-85 | NNP | denotes | CD40 |
| T260 | 86-95 | VBG | denotes | signaling |
| T261 | 96-103 | JJ | denotes | complex |
| T262 | 104-111 | VBP | denotes | include |
| T263 | 112-119 | NNS | denotes | members |
| T264 | 120-122 | IN | denotes | of |
| T265 | 123-126 | DT | denotes | the |
| T266 | 127-130 | NNP | denotes | TNF |
| T267 | 131-150 | JJ | denotes | receptor-associated |
| T268 | 151-157 | NN | denotes | factor |
| T269 | 158-159 | -LRB- | denotes | ( |
| T270 | 159-163 | NNP | denotes | TRAF |
| T271 | 163-164 | -RRB- | denotes | ) |
| T272 | 165-171 | NN | denotes | family |
| T273 | 172-174 | IN | denotes | of |
| T274 | 175-183 | NNS | denotes | proteins |
| T275 | 183-184 | . | denotes | . |
| T276 | 185-187 | PRP | denotes | We |
| T277 | 188-198 | RB | denotes | previously |
| T278 | 199-205 | VBD | denotes | showed |
| T279 | 206-210 | IN | denotes | that |
| T280 | 211-214 | DT | denotes | the |
| R169 | T247 | T248 | amod | signaling,events |
| R171 | T249 | T250 | aux | have,been |
| R172 | T250 | T250 | ROOT | been,been |
| R173 | T251 | T253 | advmod | only,characterized |
| R174 | T252 | T253 | advmod | partially,characterized |
| R175 | T253 | T250 | acomp | characterized,been |
| R176 | T254 | T253 | punct | .,characterized |
| R177 | T255 | T256 | amod | Known,components |
| R178 | T256 | T262 | nsubj | components,include |
| R179 | T257 | T256 | prep | of,components |
| R180 | T258 | T259 | det | the,CD40 |
| R181 | T259 | T257 | pobj | CD40,of |
| R182 | T260 | T256 | acl | signaling,components |
| R183 | T261 | T260 | pcomp | complex,signaling |
| R184 | T262 | T262 | ROOT | include,include |
| R185 | T263 | T262 | dobj | members,include |
| R186 | T264 | T263 | prep | of,members |
| R187 | T265 | T268 | det | the,factor |
| R188 | T266 | T268 | nmod | TNF,factor |
| R189 | T267 | T268 | amod | receptor-associated,factor |
| R190 | T268 | T264 | pobj | factor,of |
| R191 | T269 | T270 | punct | (,TRAF |
| R192 | T270 | T268 | appos | TRAF,factor |
| R193 | T271 | T270 | punct | ),TRAF |
| R194 | T272 | T263 | conj | family,members |
| R195 | T273 | T272 | prep | of,family |
| R196 | T274 | T273 | pobj | proteins,of |
| R197 | T275 | T262 | punct | .,include |
| R198 | T276 | T278 | nsubj | We,showed |
| R199 | T277 | T278 | advmod | previously,showed |
| R200 | T278 | T278 | ROOT | showed,showed |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T759 | 0-9 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
| T760 | 86-95 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T127 | 57-184 | Sentence | denotes | Known components of the CD40 signaling complex include members of the TNF receptor-associated factor (TRAF) family of proteins. |
| T8 | 57-184 | Sentence | denotes | Known components of the CD40 signaling complex include members of the TNF receptor-associated factor (TRAF) family of proteins. |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T713 | 81-85 | P25942 | denotes | CD40 |
| T714 | 127-130 | P01375 | denotes | TNF |
| T715 | 127-157 | Q13114 | denotes | TNF receptor-associated factor |
| T716 | 127-157 | Q12933 | denotes | TNF receptor-associated factor |
| T717 | 127-157 | Q9Y4K3 | denotes | TNF receptor-associated factor |