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PMC:3148254 / 6837-7154 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T2847 124-128 Protein denotes HOIP
T2848 129-138 Negative_regulation denotes deficient
T14778 190-194 Protein denotes HOIP
T14779 226-231 Protein denotes Rnf31
T14780 267-271 Protein denotes HOIP
R2117 T2847 T2848 themeOf HOIP,deficient

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T15300 226-231 Protein denotes Rnf31
T15301 267-276 Protein denotes HOIP gene

events-check-again

Id Subject Object Predicate Lexical cue
T4018 124-128 Protein denotes HOIP
T4019 129-138 Negative_regulation denotes deficient
T15319 190-194 Protein denotes HOIP
T15320 226-231 Protein denotes Rnf31
T15321 267-271 Protein denotes HOIP
R3101 T4018 T4019 themeOf HOIP,deficient

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3668 3-7 IN denotes that
T3669 8-11 DT denotes the
T3670 12-21 VB denotes targeting
T3671 22-29 NN denotes process
T3672 30-33 VB denotes was
T3673 34-44 JJ denotes successful
T3674 46-48 IN denotes In
T3675 49-52 DT denotes the
T3676 53-57 NN denotes text
T3677 58-62 WDT denotes that
T3678 63-70 VB denotes follows
T3679 70-71 -COMMA- denotes ,
T3680 72-75 DT denotes the
T3681 76-79 CD denotes two
T3682 80-93 JJ denotes gene-targeted
T3683 94-98 NN denotes cell
T3684 99-104 NN denotes lines
T3685 105-108 VB denotes are
T3686 109-117 VB denotes referred
T3687 118-120 TO denotes to
T3688 121-123 IN denotes as
T3689 124-138 JJ denotes HOIP-deficient
T3690 139-144 NN denotes cells
T15027 190-194 NN denotes HOIP
T15028 195-199 NN denotes gene
T15029 200-209 NN denotes targeting
T15030 211-212 -LRB- denotes (
T15031 212-213 NN denotes A
T15032 213-214 -RRB- denotes )
T15033 215-222 NN denotes Regions
T15034 223-225 IN denotes of
T15035 226-231 NN denotes Rnf31
T15036 232-236 NN denotes gene
T15037 237-245 NN denotes sequence
T15038 246-247 -LRB- denotes (
T15039 247-253 NN denotes bottom
T15040 253-254 -RRB- denotes )
T15041 255-259 VB denotes used
T15042 260-262 IN denotes in
T15043 263-266 DT denotes the
T15044 267-271 NN denotes HOIP
T15045 272-276 NN denotes gene
T15046 277-286 NN denotes targeting
T15047 287-293 NN denotes vector
T15048 294-295 -LRB- denotes (
T15049 295-298 NN denotes top
T15050 298-299 -RRB- denotes )
T15051 300-303 VB denotes are
T15052 304-309 VB denotes shown
T15053 311-317 NN denotes Arrows
R2918 T3669 T3670 arg1Of the,targeting
R2919 T3670 T3669 arg1Of targeting,the
R2920 T3670 T3672 arg1Of targeting,was
R2921 T3670 T3673 arg1Of targeting,successful
R2922 T3671 T3670 arg2Of process,targeting
R2924 T3672 T3668 arg1Of was,that
R2925 T3673 T3672 arg2Of successful,was
R2926 T3676 T3674 arg2Of text,In
R2927 T3676 T3675 arg1Of text,the
R2928 T3676 T3677 arg1Of text,that
R2929 T3676 T3678 arg1Of text,follows
R2930 T3684 T3680 arg1Of lines,the
R2931 T3684 T3681 arg1Of lines,two
R2932 T3684 T3682 arg1Of lines,gene-targeted
R2933 T3684 T3683 arg1Of lines,cell
R2934 T3684 T3685 arg1Of lines,are
R2935 T3684 T3686 arg2Of lines,referred
R2936 T3686 T3674 arg1Of referred,In
R2937 T3686 T3679 arg1Of referred,","
R2938 T3686 T3685 arg2Of referred,are
R2939 T3686 T3687 arg1Of referred,to
R2940 T3686 T3688 arg1Of referred,as
R2941 T3690 T3688 arg2Of cells,as
R2942 T3690 T3689 arg1Of cells,HOIP-deficient
R11923 T15029 T15027 arg1Of targeting,HOIP
R11924 T15029 T15028 arg1Of targeting,gene
R11925 T15031 T15030 arg2Of A,(
R11926 T15032 T15030 arg3Of ),(
R11927 T15033 T15030 arg1Of Regions,(
R11928 T15033 T15034 arg1Of Regions,of
R11929 T15033 T15041 arg2Of Regions,used
R11930 T15033 T15051 arg1Of Regions,are
R11931 T15033 T15052 arg2Of Regions,shown
R11934 T15037 T15036 arg1Of sequence,gene
R11935 T15037 T15038 arg1Of sequence,(
R11936 T15039 T15038 arg2Of bottom,(
R11937 T15040 T15038 arg3Of ),(
R11938 T15041 T15042 arg1Of used,in
R11939 T15047 T15042 arg2Of vector,in
R11940 T15047 T15043 arg1Of vector,the
R11941 T15047 T15044 arg1Of vector,HOIP
R11942 T15047 T15045 arg1Of vector,gene
R11943 T15047 T15046 arg1Of vector,targeting
R11944 T15047 T15048 arg1Of vector,(
R11945 T15049 T15048 arg2Of top,(
R11946 T15050 T15048 arg3Of ),(
R11947 T15052 T15051 arg2Of shown,are
R11932 T15037 T15034 arg2Of sequence,of
R11933 T15037 T15035 arg1Of sequence,Rnf31

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3220 3-7 IN denotes that
T3221 8-11 DT denotes the
T3222 12-21 VBG denotes targeting
T3223 22-29 NN denotes process
T3224 30-33 VBD denotes was
T3225 34-44 JJ denotes successful
T3226 44-45 . denotes .
T3227 46-48 IN denotes In
T3228 49-52 DT denotes the
T3229 53-57 NN denotes text
T3230 58-62 WDT denotes that
T3231 63-70 VBZ denotes follows
T3232 70-71 , denotes ,
T3233 72-75 DT denotes the
T3234 76-79 CD denotes two
T3235 80-93 JJ denotes gene-targeted
T3236 94-98 NN denotes cell
T3237 99-104 NNS denotes lines
T3238 105-108 VBP denotes are
T3239 109-117 VBN denotes referred
T3240 118-120 TO denotes to
T3241 121-123 IN denotes as
T3242 124-138 JJ denotes HOIP-deficient
T3243 139-144 NNS denotes cells
T3244 144-145 . denotes .
T14807 190-194 NNP denotes HOIP
T14808 195-199 NN denotes gene
T14809 200-209 VBG denotes targeting
T14810 209-210 . denotes .
T14811 211-212 -LRB- denotes (
T14812 212-213 NNP denotes A
T14813 213-214 -RRB- denotes )
T14814 215-222 NNS denotes Regions
T14815 223-225 IN denotes of
T14816 226-231 JJ denotes Rnf31
T14817 232-236 NN denotes gene
T14818 237-245 NN denotes sequence
T14819 246-247 -LRB- denotes (
T14820 247-253 NN denotes bottom
T14821 253-254 -RRB- denotes )
T14822 255-259 VBN denotes used
T14823 260-262 IN denotes in
T14824 263-266 DT denotes the
T14825 267-271 NNP denotes HOIP
T14826 272-276 NN denotes gene
T14827 277-286 VBG denotes targeting
T14828 287-293 NN denotes vector
T14829 294-295 -LRB- denotes (
T14830 295-298 JJ denotes top
T14831 298-299 -RRB- denotes )
T14832 300-303 VBP denotes are
T14833 304-309 VBN denotes shown
T14834 309-310 . denotes .
T14835 311-317 NNS denotes Arrows
R2465 T3220 T3224 mark that,was
R2466 T3221 T3223 det the,process
R2467 T3222 T3223 compound targeting,process
R2468 T3223 T3224 nsubj process,was
R2470 T3225 T3224 acomp successful,was
R2472 T3227 T3239 prep In,referred
R2473 T3228 T3229 det the,text
R2474 T3229 T3227 pobj text,In
R2475 T3230 T3231 nsubj that,follows
R2476 T3231 T3229 relcl follows,text
R2477 T3232 T3239 punct ",",referred
R2478 T3233 T3237 det the,lines
R2479 T3234 T3237 nummod two,lines
R2480 T3235 T3237 amod gene-targeted,lines
R2481 T3236 T3237 compound cell,lines
R2482 T3237 T3239 nsubjpass lines,referred
R2483 T3238 T3239 auxpass are,referred
R2484 T3239 T3239 ROOT referred,referred
R2485 T3240 T3239 prep to,referred
R2486 T3241 T3239 prep as,referred
R2487 T3242 T3243 amod HOIP-deficient,cells
R2488 T3243 T3241 pobj cells,as
R2489 T3244 T3239 punct .,referred
R11703 T14807 T14808 compound HOIP,gene
R11704 T14808 T14809 compound gene,targeting
R11705 T14809 T14809 ROOT targeting,targeting
R11706 T14810 T14809 punct .,targeting
R11707 T14811 T14833 punct (,shown
R11708 T14812 T14833 advmod A,shown
R11709 T14813 T14814 punct ),Regions
R11710 T14814 T14833 nsubjpass Regions,shown
R11711 T14815 T14814 prep of,Regions
R11712 T14816 T14818 amod Rnf31,sequence
R11713 T14817 T14818 compound gene,sequence
R11714 T14818 T14815 pobj sequence,of
R11715 T14819 T14818 punct (,sequence
R11716 T14820 T14818 appos bottom,sequence
R11717 T14821 T14818 punct ),sequence
R11718 T14822 T14814 acl used,Regions
R11719 T14823 T14822 prep in,used
R11720 T14824 T14826 det the,gene
R11721 T14825 T14826 compound HOIP,gene
R11722 T14826 T14823 pobj gene,in
R11723 T14827 T14814 acl targeting,Regions
R11724 T14828 T14827 dobj vector,targeting
R11725 T14829 T14828 punct (,vector
R11726 T14830 T14828 amod top,vector
R11727 T14831 T14814 punct ),Regions
R11728 T14832 T14833 auxpass are,shown
R11729 T14833 T14833 ROOT shown,shown
R11730 T14834 T14833 punct .,shown

GO-CC

Id Subject Object Predicate Lexical cue
T3844 139-144 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T2876 46-145 Sentence denotes In the text that follows, the two gene-targeted cell lines are referred to as HOIP-deficient cells.
T14797 190-210 Sentence denotes HOIP gene targeting.
T14798 211-310 Sentence denotes (A) Regions of Rnf31 gene sequence (bottom) used in the HOIP gene targeting vector (top) are shown.
T48 46-145 Sentence denotes In the text that follows, the two gene-targeted cell lines are referred to as HOIP-deficient cells.
T49 146-210 Sentence denotes 10.1371/journal.pone.0023061.g001 Figure 1 HOIP gene targeting.
T50 211-310 Sentence denotes (A) Regions of Rnf31 gene sequence (bottom) used in the HOIP gene targeting vector (top) are shown.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3809 124-128 Q96EP0 denotes HOIP
T15228 190-194 Q96EP0 denotes HOIP
T15229 226-231 Q96EP0 denotes Rnf31
T15230 267-271 Q96EP0 denotes HOIP

test2

Id Subject Object Predicate Lexical cue
T2797 124-128 Protein denotes HOIP
T2798 129-138 Negative_regulation denotes deficient
T14759 190-194 Protein denotes HOIP
T14760 226-231 Protein denotes Rnf31
T14761 267-271 Protein denotes HOIP
R2094 T2797 T2798 themeOf HOIP,deficient