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PMC:3148254 / 5472-5707 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T2829 47-51 Protein denotes HOIP
T2830 68-72 Protein denotes CD40
T2831 152-156 Protein denotes HOIP
T2832 160-164 Protein denotes CD40
T2833 215-222 Negative_regulation denotes disrupt

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T3968 68-72 Protein denotes CD40
T3969 160-164 Protein denotes CD40

events-check-again

Id Subject Object Predicate Lexical cue
T4000 47-51 Protein denotes HOIP
T4001 68-72 Protein denotes CD40
T4002 152-156 Protein denotes HOIP
T4003 160-164 Protein denotes CD40
T4004 215-222 Negative_regulation denotes disrupt

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3434 5-10 DT denotes These
T3435 11-18 NN denotes results
T3436 19-26 VB denotes support
T3437 27-30 DT denotes the
T3438 31-41 NN denotes hypothesis
T3439 42-46 IN denotes that
T3440 47-51 NN denotes HOIP
T3441 52-57 VB denotes plays
T3442 58-59 DT denotes a
T3443 60-64 NN denotes role
T3444 65-67 IN denotes in
T3445 68-72 NN denotes CD40
T3446 73-79 NN denotes signal
T3447 80-92 NN denotes transduction
T3448 94-96 TO denotes To
T3449 97-104 RB denotes further
T3450 105-111 VB denotes define
T3451 112-115 DT denotes the
T3452 116-120 NN denotes role
T3453 121-124 CC denotes and
T3454 125-133 VB denotes evaluate
T3455 134-137 DT denotes the
T3456 138-148 NN denotes importance
T3457 149-151 IN denotes of
T3458 152-156 NN denotes HOIP
T3459 157-159 IN denotes in
T3460 160-164 NN denotes CD40
T3461 165-174 NN denotes signaling
T3462 174-175 -COMMA- denotes ,
T3463 176-178 PRP denotes we
T3464 179-183 VB denotes used
T3465 184-191 JJ denotes somatic
T3466 192-196 NN denotes cell
T3467 197-201 NN denotes gene
T3468 202-211 VB denotes targeting
T3469 212-214 TO denotes to
T3470 215-222 VB denotes disrupt
T3471 223-226 DT denotes the
T3472 227-231 NN denotes gene
R2679 T3435 T3434 arg1Of results,These
R2680 T3435 T3436 arg1Of results,support
R2681 T3438 T3436 arg2Of hypothesis,support
R2682 T3438 T3437 arg1Of hypothesis,the
R2683 T3440 T3441 arg1Of HOIP,plays
R2684 T3441 T3438 arg2Of plays,hypothesis
R2685 T3441 T3439 arg1Of plays,that
R2686 T3441 T3444 arg1Of plays,in
R2687 T3443 T3441 arg2Of role,plays
R2688 T3443 T3442 arg1Of role,a
R2689 T3447 T3444 arg2Of transduction,in
R2690 T3447 T3445 arg1Of transduction,CD40
R2691 T3447 T3446 arg1Of transduction,signal
R2692 T3450 T3453 arg1Of define,and
R2693 T3452 T3450 arg2Of role,define
R2694 T3452 T3451 arg1Of role,the
R2695 T3453 T3448 arg1Of and,To
R2696 T3453 T3449 arg1Of and,further
R2697 T3454 T3453 arg2Of evaluate,and
R2698 T3456 T3454 arg2Of importance,evaluate
R2699 T3456 T3455 arg1Of importance,the
R2700 T3456 T3457 arg1Of importance,of
R2701 T3456 T3459 arg1Of importance,in
R2702 T3458 T3457 arg2Of HOIP,of
R2703 T3461 T3459 arg2Of signaling,in
R2704 T3461 T3460 arg1Of signaling,CD40
R2705 T3463 T3450 arg1Of we,define
R2706 T3463 T3454 arg1Of we,evaluate
R2707 T3463 T3464 arg1Of we,used
R2708 T3464 T3448 modOf used,To
R2709 T3464 T3462 arg1Of used,","
R2710 T3467 T3464 arg2Of gene,used
R2711 T3467 T3465 arg1Of gene,somatic
R2712 T3467 T3466 arg1Of gene,cell
R2713 T3467 T3468 arg1Of gene,targeting
R2714 T3468 T3469 modOf targeting,to
R2715 T3470 T3469 arg1Of disrupt,to
R2716 T3472 T3470 arg2Of gene,disrupt
R2717 T3472 T3471 arg1Of gene,the

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2975 3-4 . denotes .
T2976 5-10 DT denotes These
T2977 11-18 NNS denotes results
T2978 19-26 VBP denotes support
T2979 27-30 DT denotes the
T2980 31-41 NN denotes hypothesis
T2981 42-46 WDT denotes that
T2982 47-51 NNP denotes HOIP
T2983 52-57 VBZ denotes plays
T2984 58-59 DT denotes a
T2985 60-64 NN denotes role
T2986 65-67 IN denotes in
T2987 68-72 CD denotes CD40
T2988 73-79 NN denotes signal
T2989 80-92 NN denotes transduction
T2990 92-93 . denotes .
T2991 94-96 TO denotes To
T2992 97-104 RBR denotes further
T2993 105-111 VB denotes define
T2994 112-115 DT denotes the
T2995 116-120 NN denotes role
T2996 121-124 CC denotes and
T2997 125-133 VB denotes evaluate
T2998 134-137 DT denotes the
T2999 138-148 NN denotes importance
T3000 149-151 IN denotes of
T3001 152-156 NNP denotes HOIP
T3002 157-159 IN denotes in
T3003 160-164 NNP denotes CD40
T3004 165-174 VBG denotes signaling
T3005 174-175 , denotes ,
T3006 176-178 PRP denotes we
T3007 179-183 VBD denotes used
T3008 184-191 JJ denotes somatic
T3009 192-196 NN denotes cell
T3010 197-201 NN denotes gene
T3011 202-211 VBG denotes targeting
T3012 212-214 TO denotes to
T3013 215-222 VB denotes disrupt
T3014 223-226 DT denotes the
T3015 227-231 NN denotes gene
R2221 T2976 T2977 det These,results
R2222 T2977 T2978 nsubj results,support
R2223 T2978 T2978 ROOT support,support
R2224 T2979 T2980 det the,hypothesis
R2225 T2980 T2978 dobj hypothesis,support
R2226 T2981 T2983 mark that,plays
R2227 T2982 T2983 nsubj HOIP,plays
R2228 T2983 T2980 acl plays,hypothesis
R2229 T2984 T2985 det a,role
R2230 T2985 T2983 dobj role,plays
R2231 T2986 T2985 prep in,role
R2232 T2987 T2989 nummod CD40,transduction
R2233 T2988 T2989 compound signal,transduction
R2234 T2989 T2986 pobj transduction,in
R2235 T2990 T2978 punct .,support
R2236 T2991 T2993 aux To,define
R2237 T2992 T2993 advmod further,define
R2238 T2993 T3007 advcl define,used
R2239 T2994 T2995 det the,role
R2240 T2995 T2993 dobj role,define
R2241 T2996 T2993 cc and,define
R2242 T2997 T2993 conj evaluate,define
R2243 T2998 T2999 det the,importance
R2244 T2999 T2997 dobj importance,evaluate
R2245 T3000 T2999 prep of,importance
R2246 T3001 T3000 pobj HOIP,of
R2247 T3002 T2997 prep in,evaluate
R2248 T3003 T3002 pobj CD40,in
R2249 T3004 T2997 advcl signaling,evaluate
R2250 T3005 T3007 punct ",",used
R2251 T3006 T3007 nsubj we,used
R2252 T3007 T3007 ROOT used,used
R2253 T3008 T3010 compound somatic,gene
R2254 T3009 T3010 compound cell,gene
R2255 T3010 T3007 dobj gene,used
R2256 T3011 T3010 acl targeting,gene
R2257 T3012 T3013 aux to,disrupt
R2258 T3013 T3011 xcomp disrupt,targeting
R2259 T3014 T3015 det the,gene
R2260 T3015 T3013 dobj gene,disrupt

GO-BP

Id Subject Object Predicate Lexical cue
T3836 165-174 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T3839 73-92 http://purl.obolibrary.org/obo/GO_0007165 denotes signal transduction
T3840 80-92 http://purl.obolibrary.org/obo/GO_0009293 denotes transduction

sentences

Id Subject Object Predicate Lexical cue
T2867 5-93 Sentence denotes These results support the hypothesis that HOIP plays a role in CD40 signal transduction.
T39 5-93 Sentence denotes These results support the hypothesis that HOIP plays a role in CD40 signal transduction.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3794 47-51 Q96EP0 denotes HOIP
T3795 68-72 P25942 denotes CD40
T3796 152-156 Q96EP0 denotes HOIP
T3797 160-164 P25942 denotes CD40

test2

Id Subject Object Predicate Lexical cue
T2779 47-51 Protein denotes HOIP
T2780 68-72 Protein denotes CD40
T2781 152-156 Protein denotes HOIP
T2782 160-164 Protein denotes CD40
T2783 215-222 Negative_regulation denotes disrupt