PMC:3148254 / 4878-5121
Annnotations
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1180 | 6-10 | Protein | denotes | CD40 |
T1181 | 11-21 | Binding | denotes | engagement |
T2812 | 47-51 | Protein | denotes | HOIP |
T2813 | 52-61 | Negative_regulation | denotes | deficient |
T2814 | 83-93 | Negative_regulation | denotes | disruption |
T2815 | 97-102 | Protein | denotes | Rnf31 |
T2816 | 122-126 | Protein | denotes | HOIP |
T2817 | 171-175 | Protein | denotes | HOIP |
T2818 | 179-188 | Binding | denotes | recruited |
R816 | T1180 | T1181 | themeOf | CD40,engagement |
R2101 | T2812 | T2813 | themeOf | HOIP,deficient |
R2102 | T2815 | T2814 | themeOf | Rnf31,disruption |
R2103 | T2816 | T2815 | equivalentTo | HOIP,Rnf31 |
R2104 | T2817 | T2818 | themeOf | HOIP,recruited |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2642 | 6-21 | Protein | denotes | CD40 engagement |
T3953 | 97-102 | Protein | denotes | Rnf31 |
T3954 | 83-93 | Transcription | denotes | disruption |
T3955 | 196-200 | Protein | denotes | CD40 |
R3082 | T3953 | T3954 | themeOf | Rnf31,disruption |
events-check-again
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2709 | 6-10 | Protein | denotes | CD40 |
T2710 | 11-21 | Binding | denotes | engagement |
T3983 | 47-51 | Protein | denotes | HOIP |
T3984 | 52-61 | Negative_regulation | denotes | deficient |
T3985 | 83-93 | Negative_regulation | denotes | disruption |
T3986 | 97-102 | Protein | denotes | Rnf31 |
T3987 | 122-126 | Protein | denotes | HOIP |
T3988 | 171-175 | Protein | denotes | HOIP |
T3989 | 179-188 | Binding | denotes | recruited |
R2053 | T2709 | T2710 | themeOf | CD40,engagement |
R3100 | T3983 | T3984 | themeOf | HOIP,deficient |
R3102 | T3986 | T3985 | themeOf | Rnf31,disruption |
R3104 | T3987 | T3986 | equivalentTo | HOIP,Rnf31 |
R3105 | T3988 | T3989 | themeOf | HOIP,recruited |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2231 | 3-5 | TO | denotes | to |
T2232 | 6-10 | NN | denotes | CD40 |
T2233 | 11-21 | NN | denotes | engagement |
T3341 | 33-43 | NN | denotes | Generation |
T3342 | 44-46 | IN | denotes | of |
T3343 | 47-61 | JJ | denotes | HOIP-deficient |
T3344 | 62-63 | NN | denotes | B |
T3345 | 64-69 | NN | denotes | cells |
T3346 | 70-73 | IN | denotes | via |
T3347 | 74-82 | VB | denotes | targeted |
T3348 | 83-93 | NN | denotes | disruption |
T3349 | 94-96 | IN | denotes | of |
T3350 | 97-102 | NN | denotes | Rnf31 |
T3351 | 102-103 | -COMMA- | denotes | , |
T3352 | 104-107 | DT | denotes | the |
T3353 | 108-112 | NN | denotes | gene |
T3354 | 113-121 | VB | denotes | encoding |
T3355 | 122-126 | NN | denotes | HOIP |
T3356 | 127-129 | IN | denotes | In |
T3357 | 130-133 | PRP-DOLLAR- | denotes | our |
T3358 | 134-142 | JJ | denotes | previous |
T3359 | 143-148 | NN | denotes | study |
T3360 | 148-149 | -COMMA- | denotes | , |
T3361 | 150-152 | PRP | denotes | we |
T3362 | 153-165 | VB | denotes | demonstrated |
T3363 | 166-170 | IN | denotes | that |
T3364 | 171-175 | NN | denotes | HOIP |
T3365 | 176-178 | VB | denotes | is |
T3366 | 179-188 | VB | denotes | recruited |
T3367 | 189-191 | TO | denotes | to |
T3368 | 192-195 | DT | denotes | the |
T3369 | 196-200 | NN | denotes | CD40 |
T3370 | 201-210 | NN | denotes | signaling |
T3371 | 211-218 | NN | denotes | complex |
T3372 | 219-221 | IN | denotes | in |
T3373 | 222-225 | CD | denotes | two |
T3374 | 226-231 | NN | denotes | mouse |
T3375 | 232-233 | NN | denotes | B |
T3376 | 234-238 | NN | denotes | cell |
R1821 | T2233 | T2231 | arg2Of | engagement,to |
R1822 | T2233 | T2232 | arg1Of | engagement,CD40 |
R2586 | T3341 | T3342 | arg1Of | Generation,of |
R2587 | T3341 | T3346 | arg1Of | Generation,via |
R2588 | T3345 | T3342 | arg2Of | cells,of |
R2589 | T3345 | T3343 | arg1Of | cells,HOIP-deficient |
R2590 | T3345 | T3344 | arg1Of | cells,B |
R2591 | T3348 | T3346 | arg2Of | disruption,via |
R2592 | T3348 | T3347 | arg2Of | disruption,targeted |
R2593 | T3348 | T3349 | arg1Of | disruption,of |
R2594 | T3350 | T3349 | arg2Of | Rnf31,of |
R2595 | T3350 | T3351 | arg1Of | Rnf31,"," |
R2596 | T3353 | T3351 | arg2Of | gene,"," |
R2597 | T3353 | T3352 | arg1Of | gene,the |
R2598 | T3353 | T3354 | arg1Of | gene,encoding |
R2599 | T3355 | T3354 | arg2Of | HOIP,encoding |
R2600 | T3359 | T3356 | arg2Of | study,In |
R2601 | T3359 | T3357 | arg1Of | study,our |
R2602 | T3359 | T3358 | arg1Of | study,previous |
R2603 | T3361 | T3362 | arg1Of | we,demonstrated |
R2604 | T3362 | T3356 | arg1Of | demonstrated,In |
R2605 | T3362 | T3360 | arg1Of | demonstrated,"," |
R2606 | T3364 | T3365 | arg1Of | HOIP,is |
R2607 | T3364 | T3366 | arg2Of | HOIP,recruited |
R2608 | T3366 | T3362 | arg2Of | recruited,demonstrated |
R2609 | T3366 | T3363 | arg1Of | recruited,that |
R2610 | T3366 | T3365 | arg2Of | recruited,is |
R2611 | T3366 | T3367 | arg1Of | recruited,to |
R2612 | T3366 | T3372 | arg1Of | recruited,in |
R2614 | T3371 | T3367 | arg2Of | complex,to |
R2615 | T3371 | T3368 | arg1Of | complex,the |
R2616 | T3371 | T3369 | arg1Of | complex,CD40 |
R2617 | T3371 | T3370 | arg1Of | complex,signaling |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1721 | 3-5 | TO | denotes | to |
T1722 | 6-10 | CD | denotes | CD40 |
T1723 | 11-21 | NN | denotes | engagement |
T1724 | 21-22 | . | denotes | . |
T2880 | 33-43 | NNP | denotes | Generation |
T2881 | 44-46 | IN | denotes | of |
T2882 | 47-61 | NNP | denotes | HOIP-deficient |
T2883 | 62-63 | NNP | denotes | B |
T2884 | 64-69 | NNS | denotes | cells |
T2885 | 70-73 | IN | denotes | via |
T2886 | 74-82 | JJ | denotes | targeted |
T2887 | 83-93 | NN | denotes | disruption |
T2888 | 94-96 | IN | denotes | of |
T2889 | 97-102 | NNP | denotes | Rnf31 |
T2890 | 102-103 | , | denotes | , |
T2891 | 104-107 | DT | denotes | the |
T2892 | 108-112 | NN | denotes | gene |
T2893 | 113-121 | VBG | denotes | encoding |
T2894 | 122-126 | NNP | denotes | HOIP |
T2895 | 127-129 | IN | denotes | In |
T2896 | 130-133 | PRP$ | denotes | our |
T2897 | 134-142 | JJ | denotes | previous |
T2898 | 143-148 | NN | denotes | study |
T2899 | 148-149 | , | denotes | , |
T2900 | 150-152 | PRP | denotes | we |
T2901 | 153-165 | VBD | denotes | demonstrated |
T2902 | 166-170 | IN | denotes | that |
T2903 | 171-175 | NNP | denotes | HOIP |
T2904 | 176-178 | VBZ | denotes | is |
T2905 | 179-188 | VBN | denotes | recruited |
T2906 | 189-191 | TO | denotes | to |
T2907 | 192-195 | DT | denotes | the |
T2908 | 196-200 | NNP | denotes | CD40 |
T2909 | 201-210 | VBG | denotes | signaling |
T2910 | 211-218 | JJ | denotes | complex |
T2911 | 219-221 | IN | denotes | in |
T2912 | 222-225 | CD | denotes | two |
T2913 | 226-231 | NN | denotes | mouse |
T2914 | 232-233 | NNP | denotes | B |
T2915 | 234-238 | NN | denotes | cell |
R1340 | T1722 | T1723 | nummod | CD40,engagement |
R1341 | T1723 | T1721 | pobj | engagement,to |
R2125 | T2880 | T2880 | ROOT | Generation,Generation |
R2126 | T2881 | T2880 | prep | of,Generation |
R2127 | T2882 | T2883 | compound | HOIP-deficient,B |
R2128 | T2883 | T2884 | compound | B,cells |
R2129 | T2884 | T2881 | pobj | cells,of |
R2130 | T2885 | T2880 | prep | via,Generation |
R2131 | T2886 | T2887 | amod | targeted,disruption |
R2132 | T2887 | T2885 | pobj | disruption,via |
R2133 | T2888 | T2887 | prep | of,disruption |
R2134 | T2889 | T2888 | pobj | Rnf31,of |
R2135 | T2890 | T2889 | punct | ",",Rnf31 |
R2136 | T2891 | T2892 | det | the,gene |
R2137 | T2892 | T2889 | appos | gene,Rnf31 |
R2138 | T2893 | T2892 | acl | encoding,gene |
R2139 | T2894 | T2893 | dobj | HOIP,encoding |
R2140 | T2895 | T2901 | prep | In,demonstrated |
R2141 | T2896 | T2898 | poss | our,study |
R2142 | T2897 | T2898 | amod | previous,study |
R2143 | T2898 | T2895 | pobj | study,In |
R2144 | T2899 | T2901 | punct | ",",demonstrated |
R2145 | T2900 | T2901 | nsubj | we,demonstrated |
R2146 | T2901 | T2901 | ROOT | demonstrated,demonstrated |
R2147 | T2902 | T2905 | mark | that,recruited |
R2148 | T2903 | T2905 | nsubjpass | HOIP,recruited |
R2149 | T2904 | T2905 | auxpass | is,recruited |
R2150 | T2905 | T2901 | ccomp | recruited,demonstrated |
R2151 | T2906 | T2905 | prep | to,recruited |
R2152 | T2907 | T2908 | det | the,CD40 |
R2153 | T2908 | T2909 | nsubj | CD40,signaling |
R2154 | T2909 | T2906 | pcomp | signaling,to |
R2155 | T2910 | T2909 | dobj | complex,signaling |
R2156 | T2911 | T2909 | prep | in,signaling |
R2158 | T2913 | T2915 | compound | mouse,cell |
R2159 | T2914 | T2915 | compound | B,cell |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3835 | 201-210 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3841 | 64-69 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2863 | 33-126 | Sentence | denotes | Generation of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP |
T34 | 24-31 | Sentence | denotes | Results |
T35 | 33-126 | Sentence | denotes | Generation of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2294 | 6-10 | P25942 | denotes | CD40 |
T3782 | 47-51 | Q96EP0 | denotes | HOIP |
T3783 | 97-102 | Q96EP0 | denotes | Rnf31 |
T3784 | 122-126 | Q96EP0 | denotes | HOIP |
T3785 | 171-175 | Q96EP0 | denotes | HOIP |
T3786 | 196-200 | P25942 | denotes | CD40 |
test2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1111 | 6-10 | Protein | denotes | CD40 |
T1112 | 11-21 | Binding | denotes | engagement |
T2762 | 47-51 | Protein | denotes | HOIP |
T2763 | 52-61 | Negative_regulation | denotes | deficient |
T2764 | 83-93 | Negative_regulation | denotes | disruption |
T2765 | 97-102 | Protein | denotes | Rnf31 |
T2766 | 122-126 | Protein | denotes | HOIP |
T2767 | 171-175 | Protein | denotes | HOIP |
T2768 | 179-188 | Binding | denotes | recruited |
R775 | T1111 | T1112 | themeOf | CD40,engagement |
R2078 | T2762 | T2763 | themeOf | HOIP,deficient |
R2079 | T2765 | T2764 | themeOf | Rnf31,disruption |
R2080 | T2766 | T2765 | equivalentTo | HOIP,Rnf31 |
R2081 | T2767 | T2768 | themeOf | HOIP,recruited |