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PMC:3148254 / 4878-5121 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1180 6-10 Protein denotes CD40
T1181 11-21 Binding denotes engagement
T2812 47-51 Protein denotes HOIP
T2813 52-61 Negative_regulation denotes deficient
T2814 83-93 Negative_regulation denotes disruption
T2815 97-102 Protein denotes Rnf31
T2816 122-126 Protein denotes HOIP
T2817 171-175 Protein denotes HOIP
T2818 179-188 Binding denotes recruited
R816 T1180 T1181 themeOf CD40,engagement
R2101 T2812 T2813 themeOf HOIP,deficient
R2102 T2815 T2814 themeOf Rnf31,disruption
R2103 T2816 T2815 equivalentTo HOIP,Rnf31
R2104 T2817 T2818 themeOf HOIP,recruited

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2642 6-21 Protein denotes CD40 engagement
T3953 97-102 Protein denotes Rnf31
T3954 83-93 Transcription denotes disruption
T3955 196-200 Protein denotes CD40
R3082 T3953 T3954 themeOf Rnf31,disruption

events-check-again

Id Subject Object Predicate Lexical cue
T2709 6-10 Protein denotes CD40
T2710 11-21 Binding denotes engagement
T3983 47-51 Protein denotes HOIP
T3984 52-61 Negative_regulation denotes deficient
T3985 83-93 Negative_regulation denotes disruption
T3986 97-102 Protein denotes Rnf31
T3987 122-126 Protein denotes HOIP
T3988 171-175 Protein denotes HOIP
T3989 179-188 Binding denotes recruited
R2053 T2709 T2710 themeOf CD40,engagement
R3100 T3983 T3984 themeOf HOIP,deficient
R3102 T3986 T3985 themeOf Rnf31,disruption
R3104 T3987 T3986 equivalentTo HOIP,Rnf31
R3105 T3988 T3989 themeOf HOIP,recruited

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2231 3-5 TO denotes to
T2232 6-10 NN denotes CD40
T2233 11-21 NN denotes engagement
T3341 33-43 NN denotes Generation
T3342 44-46 IN denotes of
T3343 47-61 JJ denotes HOIP-deficient
T3344 62-63 NN denotes B
T3345 64-69 NN denotes cells
T3346 70-73 IN denotes via
T3347 74-82 VB denotes targeted
T3348 83-93 NN denotes disruption
T3349 94-96 IN denotes of
T3350 97-102 NN denotes Rnf31
T3351 102-103 -COMMA- denotes ,
T3352 104-107 DT denotes the
T3353 108-112 NN denotes gene
T3354 113-121 VB denotes encoding
T3355 122-126 NN denotes HOIP
T3356 127-129 IN denotes In
T3357 130-133 PRP-DOLLAR- denotes our
T3358 134-142 JJ denotes previous
T3359 143-148 NN denotes study
T3360 148-149 -COMMA- denotes ,
T3361 150-152 PRP denotes we
T3362 153-165 VB denotes demonstrated
T3363 166-170 IN denotes that
T3364 171-175 NN denotes HOIP
T3365 176-178 VB denotes is
T3366 179-188 VB denotes recruited
T3367 189-191 TO denotes to
T3368 192-195 DT denotes the
T3369 196-200 NN denotes CD40
T3370 201-210 NN denotes signaling
T3371 211-218 NN denotes complex
T3372 219-221 IN denotes in
T3373 222-225 CD denotes two
T3374 226-231 NN denotes mouse
T3375 232-233 NN denotes B
T3376 234-238 NN denotes cell
R1821 T2233 T2231 arg2Of engagement,to
R1822 T2233 T2232 arg1Of engagement,CD40
R2586 T3341 T3342 arg1Of Generation,of
R2587 T3341 T3346 arg1Of Generation,via
R2588 T3345 T3342 arg2Of cells,of
R2589 T3345 T3343 arg1Of cells,HOIP-deficient
R2590 T3345 T3344 arg1Of cells,B
R2591 T3348 T3346 arg2Of disruption,via
R2592 T3348 T3347 arg2Of disruption,targeted
R2593 T3348 T3349 arg1Of disruption,of
R2594 T3350 T3349 arg2Of Rnf31,of
R2595 T3350 T3351 arg1Of Rnf31,","
R2596 T3353 T3351 arg2Of gene,","
R2597 T3353 T3352 arg1Of gene,the
R2598 T3353 T3354 arg1Of gene,encoding
R2599 T3355 T3354 arg2Of HOIP,encoding
R2600 T3359 T3356 arg2Of study,In
R2601 T3359 T3357 arg1Of study,our
R2602 T3359 T3358 arg1Of study,previous
R2603 T3361 T3362 arg1Of we,demonstrated
R2604 T3362 T3356 arg1Of demonstrated,In
R2605 T3362 T3360 arg1Of demonstrated,","
R2606 T3364 T3365 arg1Of HOIP,is
R2607 T3364 T3366 arg2Of HOIP,recruited
R2608 T3366 T3362 arg2Of recruited,demonstrated
R2609 T3366 T3363 arg1Of recruited,that
R2610 T3366 T3365 arg2Of recruited,is
R2611 T3366 T3367 arg1Of recruited,to
R2612 T3366 T3372 arg1Of recruited,in
R2614 T3371 T3367 arg2Of complex,to
R2615 T3371 T3368 arg1Of complex,the
R2616 T3371 T3369 arg1Of complex,CD40
R2617 T3371 T3370 arg1Of complex,signaling

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1721 3-5 TO denotes to
T1722 6-10 CD denotes CD40
T1723 11-21 NN denotes engagement
T1724 21-22 . denotes .
T2880 33-43 NNP denotes Generation
T2881 44-46 IN denotes of
T2882 47-61 NNP denotes HOIP-deficient
T2883 62-63 NNP denotes B
T2884 64-69 NNS denotes cells
T2885 70-73 IN denotes via
T2886 74-82 JJ denotes targeted
T2887 83-93 NN denotes disruption
T2888 94-96 IN denotes of
T2889 97-102 NNP denotes Rnf31
T2890 102-103 , denotes ,
T2891 104-107 DT denotes the
T2892 108-112 NN denotes gene
T2893 113-121 VBG denotes encoding
T2894 122-126 NNP denotes HOIP
T2895 127-129 IN denotes In
T2896 130-133 PRP$ denotes our
T2897 134-142 JJ denotes previous
T2898 143-148 NN denotes study
T2899 148-149 , denotes ,
T2900 150-152 PRP denotes we
T2901 153-165 VBD denotes demonstrated
T2902 166-170 IN denotes that
T2903 171-175 NNP denotes HOIP
T2904 176-178 VBZ denotes is
T2905 179-188 VBN denotes recruited
T2906 189-191 TO denotes to
T2907 192-195 DT denotes the
T2908 196-200 NNP denotes CD40
T2909 201-210 VBG denotes signaling
T2910 211-218 JJ denotes complex
T2911 219-221 IN denotes in
T2912 222-225 CD denotes two
T2913 226-231 NN denotes mouse
T2914 232-233 NNP denotes B
T2915 234-238 NN denotes cell
R1340 T1722 T1723 nummod CD40,engagement
R1341 T1723 T1721 pobj engagement,to
R2125 T2880 T2880 ROOT Generation,Generation
R2126 T2881 T2880 prep of,Generation
R2127 T2882 T2883 compound HOIP-deficient,B
R2128 T2883 T2884 compound B,cells
R2129 T2884 T2881 pobj cells,of
R2130 T2885 T2880 prep via,Generation
R2131 T2886 T2887 amod targeted,disruption
R2132 T2887 T2885 pobj disruption,via
R2133 T2888 T2887 prep of,disruption
R2134 T2889 T2888 pobj Rnf31,of
R2135 T2890 T2889 punct ",",Rnf31
R2136 T2891 T2892 det the,gene
R2137 T2892 T2889 appos gene,Rnf31
R2138 T2893 T2892 acl encoding,gene
R2139 T2894 T2893 dobj HOIP,encoding
R2140 T2895 T2901 prep In,demonstrated
R2141 T2896 T2898 poss our,study
R2142 T2897 T2898 amod previous,study
R2143 T2898 T2895 pobj study,In
R2144 T2899 T2901 punct ",",demonstrated
R2145 T2900 T2901 nsubj we,demonstrated
R2146 T2901 T2901 ROOT demonstrated,demonstrated
R2147 T2902 T2905 mark that,recruited
R2148 T2903 T2905 nsubjpass HOIP,recruited
R2149 T2904 T2905 auxpass is,recruited
R2150 T2905 T2901 ccomp recruited,demonstrated
R2151 T2906 T2905 prep to,recruited
R2152 T2907 T2908 det the,CD40
R2153 T2908 T2909 nsubj CD40,signaling
R2154 T2909 T2906 pcomp signaling,to
R2155 T2910 T2909 dobj complex,signaling
R2156 T2911 T2909 prep in,signaling
R2158 T2913 T2915 compound mouse,cell
R2159 T2914 T2915 compound B,cell

GO-BP

Id Subject Object Predicate Lexical cue
T3835 201-210 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T3841 64-69 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T2863 33-126 Sentence denotes Generation of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP
T34 24-31 Sentence denotes Results
T35 33-126 Sentence denotes Generation of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2294 6-10 P25942 denotes CD40
T3782 47-51 Q96EP0 denotes HOIP
T3783 97-102 Q96EP0 denotes Rnf31
T3784 122-126 Q96EP0 denotes HOIP
T3785 171-175 Q96EP0 denotes HOIP
T3786 196-200 P25942 denotes CD40

test2

Id Subject Object Predicate Lexical cue
T1111 6-10 Protein denotes CD40
T1112 11-21 Binding denotes engagement
T2762 47-51 Protein denotes HOIP
T2763 52-61 Negative_regulation denotes deficient
T2764 83-93 Negative_regulation denotes disruption
T2765 97-102 Protein denotes Rnf31
T2766 122-126 Protein denotes HOIP
T2767 171-175 Protein denotes HOIP
T2768 179-188 Binding denotes recruited
R775 T1111 T1112 themeOf CD40,engagement
R2078 T2762 T2763 themeOf HOIP,deficient
R2079 T2765 T2764 themeOf Rnf31,disruption
R2080 T2766 T2765 equivalentTo HOIP,Rnf31
R2081 T2767 T2768 themeOf HOIP,recruited