PMC:3148254 / 4211-4450
Annnotations
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1168 | 15-19 | Protein | denotes | CD40 |
T1169 | 24-28 | Protein | denotes | IL-4 |
T1170 | 223-230 | Negative_regulation | denotes | absence |
T1171 | 234-238 | Protein | denotes | HOIP |
R812 | T1171 | T1170 | themeOf | HOIP,absence |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2619 | 15-19 | Protein | denotes | CD40 |
T2620 | 24-28 | Protein | denotes | IL-4 |
T2621 | 80-120 | Protein | denotes | immunoglobulin epsilon heavy chain locus |
T2622 | 145-164 | Protein | denotes | immunoglobulin gene |
T2623 | 36-46 | Gene_expression | denotes | production |
T2624 | 36-46 | Gene_expression | denotes | production |
T2625 | 36-46 | Gene_expression | denotes | production |
R1982 | T2619 | T2623 | themeOf | CD40,production |
R1983 | T2620 | T2624 | themeOf | IL-4,production |
R1985 | T2621 | T2625 | themeOf | immunoglobulin epsilon heavy chain locus,production |
events-check-again
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2697 | 15-19 | Protein | denotes | CD40 |
T2698 | 24-28 | Protein | denotes | IL-4 |
T2699 | 223-230 | Negative_regulation | denotes | absence |
T2700 | 234-238 | Protein | denotes | HOIP |
R2049 | T2700 | T2699 | themeOf | HOIP,absence |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2127 | 0-9 | RB | denotes | Similarly |
T2128 | 9-10 | -COMMA- | denotes | , |
T2129 | 11-14 | DT | denotes | the |
T2130 | 15-19 | NN | denotes | CD40 |
T2131 | 20-23 | CC | denotes | and |
T2132 | 24-28 | NN | denotes | IL-4 |
T2133 | 29-35 | JJ | denotes | driven |
T2134 | 36-46 | NN | denotes | production |
T2135 | 47-49 | IN | denotes | of |
T2136 | 50-58 | NN | denotes | germline |
T2137 | 59-70 | NN | denotes | transcripts |
T2138 | 71-75 | IN | denotes | from |
T2139 | 76-79 | DT | denotes | the |
T2140 | 80-94 | NN | denotes | immunoglobulin |
T2141 | 95-102 | NN | denotes | epsilon |
T2142 | 103-108 | JJ | denotes | heavy |
T2143 | 109-114 | NN | denotes | chain |
T2144 | 115-120 | NN | denotes | locus |
T2145 | 120-121 | -COMMA- | denotes | , |
T2146 | 122-124 | DT | denotes | an |
T2147 | 125-130 | NN | denotes | event |
T2148 | 131-135 | WDT | denotes | that |
T2149 | 136-144 | VB | denotes | precedes |
T2150 | 145-159 | NN | denotes | immunoglobulin |
T2151 | 160-164 | NN | denotes | gene |
T2152 | 165-178 | NN | denotes | rearrangement |
T2153 | 179-182 | CC | denotes | and |
T2154 | 183-190 | NN | denotes | isotype |
T2155 | 191-200 | NN | denotes | switching |
T2156 | 200-201 | -COMMA- | denotes | , |
T2157 | 202-205 | VB | denotes | was |
T2158 | 206-215 | JJ | denotes | defective |
T2159 | 216-218 | IN | denotes | in |
T2160 | 219-222 | DT | denotes | the |
T2161 | 223-230 | NN | denotes | absence |
T2162 | 231-233 | IN | denotes | of |
T2163 | 234-238 | NN | denotes | HOIP |
R1752 | T2130 | T2131 | arg1Of | CD40,and |
R1759 | T2132 | T2131 | arg2Of | IL-4,and |
R1760 | T2134 | T2129 | arg1Of | production,the |
R1761 | T2134 | T2130 | arg1Of | production,CD40 |
R1762 | T2134 | T2132 | arg1Of | production,IL-4 |
R1763 | T2134 | T2133 | arg1Of | production,driven |
R1772 | T2134 | T2135 | arg1Of | production,of |
R1773 | T2134 | T2157 | arg1Of | production,was |
R1776 | T2134 | T2158 | arg1Of | production,defective |
R1778 | T2137 | T2135 | arg2Of | transcripts,of |
R1788 | T2137 | T2136 | arg1Of | transcripts,germline |
R1789 | T2137 | T2138 | arg1Of | transcripts,from |
R1792 | T2144 | T2138 | arg2Of | locus,from |
R1804 | T2144 | T2139 | arg1Of | locus,the |
R1808 | T2144 | T2140 | arg1Of | locus,immunoglobulin |
R1809 | T2144 | T2141 | arg1Of | locus,epsilon |
R1810 | T2144 | T2142 | arg1Of | locus,heavy |
R1815 | T2144 | T2143 | arg1Of | locus,chain |
R1816 | T2144 | T2145 | arg1Of | locus,"," |
R1820 | T2147 | T2145 | arg2Of | event,"," |
R1823 | T2147 | T2146 | arg1Of | event,an |
R1824 | T2147 | T2148 | arg1Of | event,that |
R1825 | T2147 | T2149 | arg1Of | event,precedes |
R1826 | T2152 | T2150 | arg1Of | rearrangement,immunoglobulin |
R1827 | T2152 | T2151 | arg1Of | rearrangement,gene |
R1828 | T2152 | T2153 | arg1Of | rearrangement,and |
R1829 | T2153 | T2149 | arg2Of | and,precedes |
R1834 | T2155 | T2153 | arg2Of | switching,and |
R1835 | T2155 | T2154 | arg1Of | switching,isotype |
R1839 | T2157 | T2127 | arg1Of | was,Similarly |
R1841 | T2157 | T2128 | arg1Of | was,"," |
R1842 | T2157 | T2156 | arg1Of | was,"," |
R1843 | T2157 | T2159 | arg1Of | was,in |
R1844 | T2158 | T2157 | arg2Of | defective,was |
R1845 | T2161 | T2159 | arg2Of | absence,in |
R1846 | T2161 | T2160 | arg1Of | absence,the |
R1847 | T2161 | T2162 | arg1Of | absence,of |
R1848 | T2163 | T2162 | arg2Of | HOIP,of |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1614 | 0-9 | RB | denotes | Similarly |
T1615 | 9-10 | , | denotes | , |
T1616 | 11-14 | DT | denotes | the |
T1617 | 15-19 | NNP | denotes | CD40 |
T1618 | 20-23 | CC | denotes | and |
T1619 | 24-28 | NN | denotes | IL-4 |
T1620 | 29-35 | VBN | denotes | driven |
T1621 | 36-46 | NN | denotes | production |
T1622 | 47-49 | IN | denotes | of |
T1623 | 50-58 | NN | denotes | germline |
T1624 | 59-70 | NNS | denotes | transcripts |
T1625 | 71-75 | IN | denotes | from |
T1626 | 76-79 | DT | denotes | the |
T1627 | 80-94 | NN | denotes | immunoglobulin |
T1628 | 95-102 | NN | denotes | epsilon |
T1629 | 103-108 | JJ | denotes | heavy |
T1630 | 109-114 | NN | denotes | chain |
T1631 | 115-120 | NN | denotes | locus |
T1632 | 120-121 | , | denotes | , |
T1633 | 122-124 | DT | denotes | an |
T1634 | 125-130 | NN | denotes | event |
T1635 | 131-135 | WDT | denotes | that |
T1636 | 136-144 | VBZ | denotes | precedes |
T1637 | 145-159 | NN | denotes | immunoglobulin |
T1638 | 160-164 | NN | denotes | gene |
T1639 | 165-178 | NN | denotes | rearrangement |
T1640 | 179-182 | CC | denotes | and |
T1641 | 183-190 | NN | denotes | isotype |
T1642 | 191-200 | NN | denotes | switching |
T1643 | 200-201 | , | denotes | , |
T1644 | 202-205 | VBD | denotes | was |
T1645 | 206-215 | JJ | denotes | defective |
T1646 | 216-218 | IN | denotes | in |
T1647 | 219-222 | DT | denotes | the |
T1648 | 223-230 | NN | denotes | absence |
T1649 | 231-233 | IN | denotes | of |
T1650 | 234-238 | NNP | denotes | HOIP |
T1651 | 238-239 | . | denotes | . |
R1232 | T1614 | T1620 | advmod | Similarly,driven |
R1233 | T1615 | T1620 | punct | ",",driven |
R1234 | T1616 | T1617 | det | the,CD40 |
R1235 | T1617 | T1620 | nsubj | CD40,driven |
R1236 | T1618 | T1617 | cc | and,CD40 |
R1237 | T1619 | T1617 | conj | IL-4,CD40 |
R1238 | T1620 | T1620 | ROOT | driven,driven |
R1239 | T1621 | T1620 | dobj | production,driven |
R1240 | T1622 | T1621 | prep | of,production |
R1241 | T1623 | T1624 | compound | germline,transcripts |
R1242 | T1624 | T1622 | pobj | transcripts,of |
R1243 | T1625 | T1624 | prep | from,transcripts |
R1244 | T1626 | T1631 | det | the,locus |
R1245 | T1627 | T1631 | amod | immunoglobulin,locus |
R1246 | T1628 | T1631 | amod | epsilon,locus |
R1247 | T1629 | T1631 | amod | heavy,locus |
R1248 | T1630 | T1631 | compound | chain,locus |
R1249 | T1631 | T1625 | pobj | locus,from |
R1250 | T1632 | T1620 | punct | ",",driven |
R1251 | T1633 | T1634 | det | an,event |
R1252 | T1634 | T1620 | npadvmod | event,driven |
R1253 | T1635 | T1636 | nsubj | that,precedes |
R1254 | T1636 | T1634 | relcl | precedes,event |
R1255 | T1637 | T1639 | compound | immunoglobulin,rearrangement |
R1256 | T1638 | T1639 | compound | gene,rearrangement |
R1257 | T1639 | T1636 | dobj | rearrangement,precedes |
R1258 | T1640 | T1639 | cc | and,rearrangement |
R1259 | T1641 | T1642 | compound | isotype,switching |
R1260 | T1642 | T1639 | conj | switching,rearrangement |
R1261 | T1643 | T1620 | punct | ",",driven |
R1262 | T1644 | T1620 | conj | was,driven |
R1263 | T1645 | T1644 | acomp | defective,was |
R1264 | T1646 | T1644 | prep | in,was |
R1265 | T1647 | T1648 | det | the,absence |
R1266 | T1648 | T1646 | pobj | absence,in |
R1267 | T1649 | T1648 | prep | of,absence |
R1268 | T1650 | T1649 | pobj | HOIP,of |
R1269 | T1651 | T1620 | punct | .,driven |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2366 | 183-200 | http://purl.obolibrary.org/obo/GO_0045190 | denotes | isotype switching |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2405 | 80-94 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | immunoglobulin |
T2406 | 145-159 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | immunoglobulin |
T2407 | 24-28 | http://purl.obolibrary.org/obo/GO_0005136 | denotes | IL-4 |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1195 | 0-239 | Sentence | denotes | Similarly, the CD40 and IL-4 driven production of germline transcripts from the immunoglobulin epsilon heavy chain locus, an event that precedes immunoglobulin gene rearrangement and isotype switching, was defective in the absence of HOIP. |
T30 | 0-239 | Sentence | denotes | Similarly, the CD40 and IL-4 driven production of germline transcripts from the immunoglobulin epsilon heavy chain locus, an event that precedes immunoglobulin gene rearrangement and isotype switching, was defective in the absence of HOIP. |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2282 | 15-19 | P25942 | denotes | CD40 |
T2283 | 24-28 | P05112 | denotes | IL-4 |
T2284 | 234-238 | Q96EP0 | denotes | HOIP |
test2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1097 | 15-19 | Protein | denotes | CD40 |
T1098 | 24-28 | Protein | denotes | IL-4 |
T1099 | 36-46 | Gene_expression | denotes | production |
T1100 | 206-215 | Negative_regulation | denotes | defective |
T1101 | 223-230 | Negative_regulation | denotes | absence |
T1102 | 234-238 | Protein | denotes | HOIP |
R771 | T1102 | T1101 | themeOf | HOIP,absence |