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PMC:3148254 / 4211-4450 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1168 15-19 Protein denotes CD40
T1169 24-28 Protein denotes IL-4
T1170 223-230 Negative_regulation denotes absence
T1171 234-238 Protein denotes HOIP
R812 T1171 T1170 themeOf HOIP,absence

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2619 15-19 Protein denotes CD40
T2620 24-28 Protein denotes IL-4
T2621 80-120 Protein denotes immunoglobulin epsilon heavy chain locus
T2622 145-164 Protein denotes immunoglobulin gene
T2623 36-46 Gene_expression denotes production
T2624 36-46 Gene_expression denotes production
T2625 36-46 Gene_expression denotes production
R1982 T2619 T2623 themeOf CD40,production
R1983 T2620 T2624 themeOf IL-4,production
R1985 T2621 T2625 themeOf immunoglobulin epsilon heavy chain locus,production

events-check-again

Id Subject Object Predicate Lexical cue
T2697 15-19 Protein denotes CD40
T2698 24-28 Protein denotes IL-4
T2699 223-230 Negative_regulation denotes absence
T2700 234-238 Protein denotes HOIP
R2049 T2700 T2699 themeOf HOIP,absence

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2127 0-9 RB denotes Similarly
T2128 9-10 -COMMA- denotes ,
T2129 11-14 DT denotes the
T2130 15-19 NN denotes CD40
T2131 20-23 CC denotes and
T2132 24-28 NN denotes IL-4
T2133 29-35 JJ denotes driven
T2134 36-46 NN denotes production
T2135 47-49 IN denotes of
T2136 50-58 NN denotes germline
T2137 59-70 NN denotes transcripts
T2138 71-75 IN denotes from
T2139 76-79 DT denotes the
T2140 80-94 NN denotes immunoglobulin
T2141 95-102 NN denotes epsilon
T2142 103-108 JJ denotes heavy
T2143 109-114 NN denotes chain
T2144 115-120 NN denotes locus
T2145 120-121 -COMMA- denotes ,
T2146 122-124 DT denotes an
T2147 125-130 NN denotes event
T2148 131-135 WDT denotes that
T2149 136-144 VB denotes precedes
T2150 145-159 NN denotes immunoglobulin
T2151 160-164 NN denotes gene
T2152 165-178 NN denotes rearrangement
T2153 179-182 CC denotes and
T2154 183-190 NN denotes isotype
T2155 191-200 NN denotes switching
T2156 200-201 -COMMA- denotes ,
T2157 202-205 VB denotes was
T2158 206-215 JJ denotes defective
T2159 216-218 IN denotes in
T2160 219-222 DT denotes the
T2161 223-230 NN denotes absence
T2162 231-233 IN denotes of
T2163 234-238 NN denotes HOIP
R1752 T2130 T2131 arg1Of CD40,and
R1759 T2132 T2131 arg2Of IL-4,and
R1760 T2134 T2129 arg1Of production,the
R1761 T2134 T2130 arg1Of production,CD40
R1762 T2134 T2132 arg1Of production,IL-4
R1763 T2134 T2133 arg1Of production,driven
R1772 T2134 T2135 arg1Of production,of
R1773 T2134 T2157 arg1Of production,was
R1776 T2134 T2158 arg1Of production,defective
R1778 T2137 T2135 arg2Of transcripts,of
R1788 T2137 T2136 arg1Of transcripts,germline
R1789 T2137 T2138 arg1Of transcripts,from
R1792 T2144 T2138 arg2Of locus,from
R1804 T2144 T2139 arg1Of locus,the
R1808 T2144 T2140 arg1Of locus,immunoglobulin
R1809 T2144 T2141 arg1Of locus,epsilon
R1810 T2144 T2142 arg1Of locus,heavy
R1815 T2144 T2143 arg1Of locus,chain
R1816 T2144 T2145 arg1Of locus,","
R1820 T2147 T2145 arg2Of event,","
R1823 T2147 T2146 arg1Of event,an
R1824 T2147 T2148 arg1Of event,that
R1825 T2147 T2149 arg1Of event,precedes
R1826 T2152 T2150 arg1Of rearrangement,immunoglobulin
R1827 T2152 T2151 arg1Of rearrangement,gene
R1828 T2152 T2153 arg1Of rearrangement,and
R1829 T2153 T2149 arg2Of and,precedes
R1834 T2155 T2153 arg2Of switching,and
R1835 T2155 T2154 arg1Of switching,isotype
R1839 T2157 T2127 arg1Of was,Similarly
R1841 T2157 T2128 arg1Of was,","
R1842 T2157 T2156 arg1Of was,","
R1843 T2157 T2159 arg1Of was,in
R1844 T2158 T2157 arg2Of defective,was
R1845 T2161 T2159 arg2Of absence,in
R1846 T2161 T2160 arg1Of absence,the
R1847 T2161 T2162 arg1Of absence,of
R1848 T2163 T2162 arg2Of HOIP,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1614 0-9 RB denotes Similarly
T1615 9-10 , denotes ,
T1616 11-14 DT denotes the
T1617 15-19 NNP denotes CD40
T1618 20-23 CC denotes and
T1619 24-28 NN denotes IL-4
T1620 29-35 VBN denotes driven
T1621 36-46 NN denotes production
T1622 47-49 IN denotes of
T1623 50-58 NN denotes germline
T1624 59-70 NNS denotes transcripts
T1625 71-75 IN denotes from
T1626 76-79 DT denotes the
T1627 80-94 NN denotes immunoglobulin
T1628 95-102 NN denotes epsilon
T1629 103-108 JJ denotes heavy
T1630 109-114 NN denotes chain
T1631 115-120 NN denotes locus
T1632 120-121 , denotes ,
T1633 122-124 DT denotes an
T1634 125-130 NN denotes event
T1635 131-135 WDT denotes that
T1636 136-144 VBZ denotes precedes
T1637 145-159 NN denotes immunoglobulin
T1638 160-164 NN denotes gene
T1639 165-178 NN denotes rearrangement
T1640 179-182 CC denotes and
T1641 183-190 NN denotes isotype
T1642 191-200 NN denotes switching
T1643 200-201 , denotes ,
T1644 202-205 VBD denotes was
T1645 206-215 JJ denotes defective
T1646 216-218 IN denotes in
T1647 219-222 DT denotes the
T1648 223-230 NN denotes absence
T1649 231-233 IN denotes of
T1650 234-238 NNP denotes HOIP
T1651 238-239 . denotes .
R1232 T1614 T1620 advmod Similarly,driven
R1233 T1615 T1620 punct ",",driven
R1234 T1616 T1617 det the,CD40
R1235 T1617 T1620 nsubj CD40,driven
R1236 T1618 T1617 cc and,CD40
R1237 T1619 T1617 conj IL-4,CD40
R1238 T1620 T1620 ROOT driven,driven
R1239 T1621 T1620 dobj production,driven
R1240 T1622 T1621 prep of,production
R1241 T1623 T1624 compound germline,transcripts
R1242 T1624 T1622 pobj transcripts,of
R1243 T1625 T1624 prep from,transcripts
R1244 T1626 T1631 det the,locus
R1245 T1627 T1631 amod immunoglobulin,locus
R1246 T1628 T1631 amod epsilon,locus
R1247 T1629 T1631 amod heavy,locus
R1248 T1630 T1631 compound chain,locus
R1249 T1631 T1625 pobj locus,from
R1250 T1632 T1620 punct ",",driven
R1251 T1633 T1634 det an,event
R1252 T1634 T1620 npadvmod event,driven
R1253 T1635 T1636 nsubj that,precedes
R1254 T1636 T1634 relcl precedes,event
R1255 T1637 T1639 compound immunoglobulin,rearrangement
R1256 T1638 T1639 compound gene,rearrangement
R1257 T1639 T1636 dobj rearrangement,precedes
R1258 T1640 T1639 cc and,rearrangement
R1259 T1641 T1642 compound isotype,switching
R1260 T1642 T1639 conj switching,rearrangement
R1261 T1643 T1620 punct ",",driven
R1262 T1644 T1620 conj was,driven
R1263 T1645 T1644 acomp defective,was
R1264 T1646 T1644 prep in,was
R1265 T1647 T1648 det the,absence
R1266 T1648 T1646 pobj absence,in
R1267 T1649 T1648 prep of,absence
R1268 T1650 T1649 pobj HOIP,of
R1269 T1651 T1620 punct .,driven

GO-BP

Id Subject Object Predicate Lexical cue
T2366 183-200 http://purl.obolibrary.org/obo/GO_0045190 denotes isotype switching

GO-MF

Id Subject Object Predicate Lexical cue
T2405 80-94 http://purl.obolibrary.org/obo/GO_0003823 denotes immunoglobulin
T2406 145-159 http://purl.obolibrary.org/obo/GO_0003823 denotes immunoglobulin
T2407 24-28 http://purl.obolibrary.org/obo/GO_0005136 denotes IL-4

sentences

Id Subject Object Predicate Lexical cue
T1195 0-239 Sentence denotes Similarly, the CD40 and IL-4 driven production of germline transcripts from the immunoglobulin epsilon heavy chain locus, an event that precedes immunoglobulin gene rearrangement and isotype switching, was defective in the absence of HOIP.
T30 0-239 Sentence denotes Similarly, the CD40 and IL-4 driven production of germline transcripts from the immunoglobulin epsilon heavy chain locus, an event that precedes immunoglobulin gene rearrangement and isotype switching, was defective in the absence of HOIP.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2282 15-19 P25942 denotes CD40
T2283 24-28 P05112 denotes IL-4
T2284 234-238 Q96EP0 denotes HOIP

test2

Id Subject Object Predicate Lexical cue
T1097 15-19 Protein denotes CD40
T1098 24-28 Protein denotes IL-4
T1099 36-46 Gene_expression denotes production
T1100 206-215 Negative_regulation denotes defective
T1101 223-230 Negative_regulation denotes absence
T1102 234-238 Protein denotes HOIP
R771 T1102 T1101 themeOf HOIP,absence