PMC:3148254 / 4015-4180
Annnotations
bionlp-st-ge-2016-reference
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1160 | 36-40 | Protein | denotes | CD40 |
| T1161 | 84-88 | Protein | denotes | CD40 |
| T1162 | 89-96 | Positive_regulation | denotes | induced |
| T1163 | 97-109 | Positive_regulation | denotes | upregulation |
| T1164 | 113-117 | Protein | denotes | CD80 |
| R807 | T1161 | T1162 | causeOf | CD40,induced |
| R809 | T1163 | T1162 | themeOf | upregulation,induced |
| R810 | T1164 | T1163 | themeOf | CD80,upregulation |
bionlp-st-ge-2016-reference-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2616 | 29-40 | Protein | denotes | B cell CD40 |
| T2617 | 84-88 | Protein | denotes | CD40 |
| T2618 | 113-117 | Protein | denotes | CD80 |
events-check-again
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2689 | 36-40 | Protein | denotes | CD40 |
| T2690 | 84-88 | Protein | denotes | CD40 |
| T2691 | 89-96 | Positive_regulation | denotes | induced |
| T2692 | 97-109 | Positive_regulation | denotes | upregulation |
| T2693 | 113-117 | Protein | denotes | CD80 |
| R2044 | T2690 | T2691 | causeOf | CD40,induced |
| R2046 | T2692 | T2691 | themeOf | upregulation,induced |
| R2047 | T2693 | T2692 | themeOf | CD80,upregulation |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2085 | 4-6 | TO | denotes | to |
| T2086 | 7-9 | VB | denotes | be |
| T2087 | 10-11 | DT | denotes | a |
| T2088 | 12-18 | JJ | denotes | useful |
| T2089 | 19-24 | NN | denotes | model |
| T2090 | 25-28 | IN | denotes | for |
| T2091 | 29-30 | NN | denotes | B |
| T2092 | 31-35 | NN | denotes | cell |
| T2093 | 36-40 | NN | denotes | CD40 |
| T2094 | 41-50 | NN | denotes | signaling |
| T2095 | 51-52 | -LRB- | denotes | [ |
| T2096 | 52-53 | CD | denotes | 7 |
| T2097 | 53-54 | -RRB- | denotes | ] |
| T2098 | 54-55 | -COMMA- | denotes | , |
| T2099 | 56-57 | -LRB- | denotes | [ |
| T2100 | 57-58 | CD | denotes | 8 |
| T2101 | 58-59 | -RRB- | denotes | ] |
| T2102 | 59-60 | -COMMA- | denotes | , |
| T2103 | 61-62 | -LRB- | denotes | [ |
| T2104 | 62-63 | CD | denotes | 9 |
| T2105 | 63-64 | -RRB- | denotes | ] |
| T2106 | 66-68 | PRP | denotes | We |
| T2107 | 69-74 | VB | denotes | found |
| T2108 | 75-79 | IN | denotes | that |
| T2109 | 80-83 | DT | denotes | the |
| T2110 | 84-96 | JJ | denotes | CD40-induced |
| T2111 | 97-109 | NN | denotes | upregulation |
| T2112 | 110-112 | IN | denotes | of |
| T2113 | 113-117 | NN | denotes | CD80 |
| T2114 | 118-119 | -LRB- | denotes | ( |
| T2115 | 119-120 | DT | denotes | a |
| T2116 | 121-134 | JJ | denotes | costimulatory |
| T2117 | 135-143 | NN | denotes | molecule |
| T2118 | 144-147 | IN | denotes | for |
| T2119 | 148-149 | NN | denotes | T |
| T2120 | 150-155 | NN | denotes | cells |
| T2121 | 155-156 | -RRB- | denotes | ) |
| T2122 | 157-160 | VB | denotes | was |
| R1624 | T2094 | T2090 | arg2Of | signaling,for |
| R1625 | T2094 | T2091 | arg1Of | signaling,B |
| R1627 | T2094 | T2092 | arg1Of | signaling,cell |
| R1628 | T2094 | T2093 | arg1Of | signaling,CD40 |
| R1630 | T2094 | T2095 | arg1Of | signaling,[ |
| R1633 | T2096 | T2095 | arg2Of | 7,[ |
| R1639 | T2097 | T2095 | arg3Of | ],[ |
| R1650 | T2100 | T2099 | arg2Of | 8,[ |
| R1651 | T2101 | T2099 | arg3Of | ],[ |
| R1659 | T2104 | T2103 | arg2Of | 9,[ |
| R1663 | T2105 | T2103 | arg3Of | ],[ |
| R1670 | T2106 | T2107 | arg1Of | We,found |
| R1675 | T2111 | T2109 | arg1Of | upregulation,the |
| R1683 | T2111 | T2110 | arg1Of | upregulation,CD40-induced |
| R1689 | T2111 | T2112 | arg1Of | upregulation,of |
| R1691 | T2111 | T2122 | arg1Of | upregulation,was |
| R1698 | T2113 | T2112 | arg2Of | CD80,of |
| R1704 | T2113 | T2114 | arg1Of | CD80,( |
| R1705 | T2117 | T2114 | arg2Of | molecule,( |
| R1713 | T2117 | T2115 | arg1Of | molecule,a |
| R1718 | T2117 | T2116 | arg1Of | molecule,costimulatory |
| R1719 | T2117 | T2118 | arg1Of | molecule,for |
| R1722 | T2120 | T2118 | arg2Of | cells,for |
| R1733 | T2120 | T2119 | arg1Of | cells,T |
| R1734 | T2121 | T2114 | arg3Of | ),( |
| R1736 | T2122 | T2107 | arg2Of | was,found |
| R1737 | T2122 | T2108 | arg1Of | was,that |
| R1754 | T2086 | T2085 | arg1Of | be,to |
| R1755 | T2089 | T2086 | arg2Of | model,be |
| R1756 | T2089 | T2087 | arg1Of | model,a |
| R1757 | T2089 | T2088 | arg1Of | model,useful |
| R1758 | T2089 | T2090 | arg1Of | model,for |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 21829693-12958312-89653755 | 52-53 | 12958312 | denotes | 7 |
| 21829693-17878362-89653756 | 57-58 | 17878362 | denotes | 8 |
| 21829693-14981114-89653757 | 62-63 | 14981114 | denotes | 9 |
| T40872 | 52-53 | 12958312 | denotes | 7 |
| T96147 | 57-58 | 17878362 | denotes | 8 |
| T94358 | 62-63 | 14981114 | denotes | 9 |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1570 | 4-6 | TO | denotes | to |
| T1571 | 7-9 | VB | denotes | be |
| T1572 | 10-11 | DT | denotes | a |
| T1573 | 12-18 | JJ | denotes | useful |
| T1574 | 19-24 | NN | denotes | model |
| T1575 | 25-28 | IN | denotes | for |
| T1576 | 29-30 | NNP | denotes | B |
| T1577 | 31-35 | NN | denotes | cell |
| T1578 | 36-40 | CD | denotes | CD40 |
| T1579 | 41-50 | VBG | denotes | signaling |
| T1580 | 51-52 | NN | denotes | [ |
| T1581 | 52-53 | CD | denotes | 7 |
| T1582 | 53-54 | NNP | denotes | ] |
| T1583 | 54-55 | , | denotes | , |
| T1584 | 56-57 | NNP | denotes | [ |
| T1585 | 57-58 | CD | denotes | 8 |
| T1586 | 58-59 | NNP | denotes | ] |
| T1587 | 59-60 | , | denotes | , |
| T1588 | 61-62 | NNP | denotes | [ |
| T1589 | 62-63 | CD | denotes | 9 |
| T1590 | 63-64 | NNP | denotes | ] |
| T1591 | 64-65 | . | denotes | . |
| T1592 | 66-68 | PRP | denotes | We |
| T1593 | 69-74 | VBD | denotes | found |
| T1594 | 75-79 | IN | denotes | that |
| T1595 | 80-83 | DT | denotes | the |
| T1596 | 84-96 | JJ | denotes | CD40-induced |
| T1597 | 97-109 | NN | denotes | upregulation |
| T1598 | 110-112 | IN | denotes | of |
| T1599 | 113-117 | NNP | denotes | CD80 |
| T1600 | 118-119 | -LRB- | denotes | ( |
| T1601 | 119-120 | DT | denotes | a |
| T1602 | 121-134 | JJ | denotes | costimulatory |
| T1603 | 135-143 | NN | denotes | molecule |
| T1604 | 144-147 | IN | denotes | for |
| T1605 | 148-149 | NNP | denotes | T |
| T1606 | 150-155 | NNS | denotes | cells |
| T1607 | 155-156 | -RRB- | denotes | ) |
| T1608 | 157-160 | VBD | denotes | was |
| R1188 | T1570 | T1571 | aux | to,be |
| R1190 | T1572 | T1574 | det | a,model |
| R1191 | T1573 | T1574 | amod | useful,model |
| R1192 | T1574 | T1571 | attr | model,be |
| R1193 | T1575 | T1574 | prep | for,model |
| R1194 | T1576 | T1577 | compound | B,cell |
| R1195 | T1577 | T1575 | pobj | cell,for |
| R1196 | T1578 | T1577 | nummod | CD40,cell |
| R1197 | T1579 | T1574 | acl | signaling,model |
| R1198 | T1580 | T1579 | dobj | [,signaling |
| R1199 | T1581 | T1580 | nummod | 7,[ |
| R1200 | T1582 | T1580 | conj | ],[ |
| R1201 | T1583 | T1582 | punct | ",",] |
| R1202 | T1584 | T1586 | nmod | [,] |
| R1203 | T1585 | T1586 | nummod | 8,] |
| R1204 | T1586 | T1582 | conj | ],] |
| R1205 | T1587 | T1586 | punct | ",",] |
| R1206 | T1588 | T1590 | det | [,] |
| R1207 | T1589 | T1590 | nummod | 9,] |
| R1208 | T1590 | T1586 | appos | ],] |
| R1210 | T1592 | T1593 | nsubj | We,found |
| R1211 | T1593 | T1593 | ROOT | found,found |
| R1212 | T1594 | T1608 | mark | that,was |
| R1213 | T1595 | T1597 | det | the,upregulation |
| R1214 | T1596 | T1597 | amod | CD40-induced,upregulation |
| R1215 | T1597 | T1608 | nsubj | upregulation,was |
| R1216 | T1598 | T1597 | prep | of,upregulation |
| R1217 | T1599 | T1598 | pobj | CD80,of |
| R1218 | T1600 | T1599 | punct | (,CD80 |
| R1219 | T1601 | T1603 | det | a,molecule |
| R1220 | T1602 | T1603 | amod | costimulatory,molecule |
| R1221 | T1603 | T1599 | appos | molecule,CD80 |
| R1222 | T1604 | T1603 | prep | for,molecule |
| R1223 | T1605 | T1606 | compound | T,cells |
| R1224 | T1606 | T1604 | pobj | cells,for |
| R1225 | T1607 | T1599 | punct | ),CD80 |
| R1226 | T1608 | T1593 | ccomp | was,found |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2322 | 41-50 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2417 | 150-155 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2278 | 36-40 | P25942 | denotes | CD40 |
| T2279 | 84-88 | P25942 | denotes | CD40 |
| T2280 | 113-117 | P33681 | denotes | CD80 |
test2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1089 | 36-40 | Protein | denotes | CD40 |
| T1090 | 84-88 | Protein | denotes | CD40 |
| T1091 | 89-96 | Positive_regulation | denotes | induced |
| T1092 | 97-109 | Positive_regulation | denotes | upregulation |
| T1093 | 113-117 | Protein | denotes | CD80 |
| R764 | T1090 | T1091 | causeOf | CD40,induced |
| R766 | T1092 | T1091 | themeOf | upregulation,induced |
| R768 | T1093 | T1092 | themeOf | CD80,upregulation |