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PMC:3148254 / 3811-4100 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1157 143-149 Negative_regulation denotes ablate
T1158 150-160 Gene_expression denotes expression
T1159 164-168 Protein denotes HOIP
T1160 240-244 Protein denotes CD40
R805 T1158 T1157 themeOf expression,ablate
R806 T1159 T1158 themeOf HOIP,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2613 29-34 Protein denotes NF-κB
T2614 15-25 Positive_regulation denotes activation
T2616 233-244 Protein denotes B cell CD40
R1977 T2613 T2614 themeOf NF-κB,activation

events-check-again

Id Subject Object Predicate Lexical cue
T2686 143-149 Negative_regulation denotes ablate
T2687 150-160 Gene_expression denotes expression
T2688 164-168 Protein denotes HOIP
T2689 240-244 Protein denotes CD40
R2037 T2687 T2686 themeOf expression,ablate
R2042 T2688 T2687 themeOf HOIP,expression

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2050 7-10 IN denotes for
T2051 11-14 DT denotes the
T2052 15-25 NN denotes activation
T2053 26-28 IN denotes of
T2054 29-34 NN denotes NF-κB
T2055 35-38 CC denotes and
T2056 39-47 RB denotes possibly
T2057 48-53 JJ denotes other
T2058 54-63 VB denotes signaling
T2059 64-73 NN denotes molecules
T2060 75-77 TO denotes To
T2061 78-82 VB denotes test
T2062 83-87 DT denotes this
T2063 88-98 NN denotes hypothesis
T2064 98-99 -COMMA- denotes ,
T2065 100-102 PRP denotes we
T2066 103-111 VB denotes employed
T2067 112-119 JJ denotes somatic
T2068 120-124 NN denotes cell
T2069 125-129 NN denotes gene
T2070 130-139 VB denotes targeting
T2071 140-142 TO denotes to
T2072 143-149 VB denotes ablate
T2073 150-160 NN denotes expression
T2074 161-163 IN denotes of
T2075 164-168 NN denotes HOIP
T2076 169-171 IN denotes in
T2077 172-173 DT denotes a
T2078 174-179 NN denotes mouse
T2079 180-181 NN denotes B
T2080 182-186 NN denotes cell
T2081 187-191 NN denotes line
T2082 192-196 WDT denotes that
T2083 197-200 VB denotes has
T2084 201-207 VB denotes proven
T2085 208-210 TO denotes to
T2086 211-213 VB denotes be
T2087 214-215 DT denotes a
T2088 216-222 JJ denotes useful
T2089 223-228 NN denotes model
T2090 229-232 IN denotes for
T2091 233-234 NN denotes B
T2092 235-239 NN denotes cell
T2093 240-244 NN denotes CD40
T2094 245-254 NN denotes signaling
T2095 255-256 -LRB- denotes [
T2096 256-257 CD denotes 7
T2097 257-258 -RRB- denotes ]
T2098 258-259 -COMMA- denotes ,
T2099 260-261 -LRB- denotes [
T2100 261-262 CD denotes 8
T2101 262-263 -RRB- denotes ]
T2102 263-264 -COMMA- denotes ,
T2103 265-266 -LRB- denotes [
T2104 266-267 CD denotes 9
T2105 267-268 -RRB- denotes ]
T2106 270-272 PRP denotes We
T2107 273-278 VB denotes found
T2108 279-283 IN denotes that
T2109 284-287 DT denotes the
T7478 7-10 IN denotes for
R1624 T2094 T2090 arg2Of signaling,for
R1625 T2094 T2091 arg1Of signaling,B
R1627 T2094 T2092 arg1Of signaling,cell
R1628 T2094 T2093 arg1Of signaling,CD40
R1630 T2094 T2095 arg1Of signaling,[
R1633 T2096 T2095 arg2Of 7,[
R1639 T2097 T2095 arg3Of ],[
R1641 T2100 T2070 arg2Of 8,targeting
R1650 T2100 T2099 arg2Of 8,[
R1651 T2101 T2099 arg3Of ],[
R1659 T2104 T2103 arg2Of 9,[
R1663 T2105 T2103 arg3Of ],[
R1670 T2106 T2107 arg1Of We,found
R1699 T2052 T2050 arg2Of activation,for
R1700 T2052 T2051 arg1Of activation,the
R1701 T2052 T2053 arg1Of activation,of
R1702 T2054 T2055 arg1Of NF-κB,and
R1703 T2055 T2053 arg2Of and,of
R1706 T2059 T2055 arg2Of molecules,and
R1707 T2059 T2056 arg1Of molecules,possibly
R1708 T2059 T2057 arg1Of molecules,other
R1709 T2059 T2058 arg1Of molecules,signaling
R1710 T2061 T2060 arg1Of test,To
R1711 T2063 T2061 arg2Of hypothesis,test
R1712 T2063 T2062 arg1Of hypothesis,this
R1714 T2065 T2061 arg1Of we,test
R1715 T2065 T2066 arg1Of we,employed
R1716 T2066 T2060 modOf employed,To
R1717 T2066 T2064 arg1Of employed,","
R1720 T2066 T2102 arg1Of employed,","
R1721 T2066 T2103 arg1Of employed,[
R1723 T2069 T2066 arg2Of gene,employed
R1724 T2069 T2067 arg1Of gene,somatic
R1725 T2069 T2068 arg1Of gene,cell
R1726 T2069 T2070 arg1Of gene,targeting
R1727 T2070 T2071 modOf targeting,to
R1728 T2070 T2098 arg1Of targeting,","
R1729 T2072 T2071 arg1Of ablate,to
R1730 T2073 T2072 arg2Of expression,ablate
R1731 T2073 T2074 arg1Of expression,of
R1732 T2073 T2076 arg1Of expression,in
R1735 T2075 T2074 arg2Of HOIP,of
R1739 T2081 T2076 arg2Of line,in
R1740 T2081 T2077 arg1Of line,a
R1741 T2081 T2078 arg1Of line,mouse
R1742 T2081 T2079 arg1Of line,B
R1744 T2081 T2080 arg1Of line,cell
R1745 T2081 T2082 arg1Of line,that
R1746 T2081 T2083 arg1Of line,has
R1747 T2081 T2084 arg1Of line,proven
R1748 T2081 T2086 arg1Of line,be
R1751 T2084 T2083 arg2Of proven,has
R1753 T2086 T2084 arg2Of be,proven
R1754 T2086 T2085 arg1Of be,to
R1755 T2089 T2086 arg2Of model,be
R1756 T2089 T2087 arg1Of model,a
R1757 T2089 T2088 arg1Of model,useful
R1758 T2089 T2090 arg1Of model,for

2_test

Id Subject Object Predicate Lexical cue
21829693-12958312-89653755 256-257 12958312 denotes 7
21829693-17878362-89653756 261-262 17878362 denotes 8
21829693-14981114-89653757 266-267 14981114 denotes 9
T40872 256-257 12958312 denotes 7
T96147 261-262 17878362 denotes 8
T94358 266-267 14981114 denotes 9

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1534 7-10 IN denotes for
T1535 11-14 DT denotes the
T1536 15-25 NN denotes activation
T1537 26-28 IN denotes of
T1538 29-34 NNP denotes NF-κB
T1539 35-38 CC denotes and
T1540 39-47 RB denotes possibly
T1541 48-53 JJ denotes other
T1542 54-63 VBG denotes signaling
T1543 64-73 NNS denotes molecules
T1544 73-74 . denotes .
T1545 75-77 TO denotes To
T1546 78-82 VB denotes test
T1547 83-87 DT denotes this
T1548 88-98 NN denotes hypothesis
T1549 98-99 , denotes ,
T1550 100-102 PRP denotes we
T1551 103-111 VBD denotes employed
T1552 112-119 JJ denotes somatic
T1553 120-124 NN denotes cell
T1554 125-129 NN denotes gene
T1555 130-139 VBG denotes targeting
T1556 140-142 TO denotes to
T1557 143-149 VB denotes ablate
T1558 150-160 NN denotes expression
T1559 161-163 IN denotes of
T1560 164-168 NNP denotes HOIP
T1561 169-171 IN denotes in
T1562 172-173 DT denotes a
T1563 174-179 NN denotes mouse
T1564 180-181 NNP denotes B
T1565 182-186 NN denotes cell
T1566 187-191 NN denotes line
T1567 192-196 WDT denotes that
T1568 197-200 VBZ denotes has
T1569 201-207 VBN denotes proven
T1570 208-210 TO denotes to
T1571 211-213 VB denotes be
T1572 214-215 DT denotes a
T1573 216-222 JJ denotes useful
T1574 223-228 NN denotes model
T1575 229-232 IN denotes for
T1576 233-234 NNP denotes B
T1577 235-239 NN denotes cell
T1578 240-244 CD denotes CD40
T1579 245-254 VBG denotes signaling
T1580 255-256 NN denotes [
T1581 256-257 CD denotes 7
T1582 257-258 NNP denotes ]
T1583 258-259 , denotes ,
T1584 260-261 NNP denotes [
T1585 261-262 CD denotes 8
T1586 262-263 NNP denotes ]
T1587 263-264 , denotes ,
T1588 265-266 NNP denotes [
T1589 266-267 CD denotes 9
T1590 267-268 NNP denotes ]
T1591 268-269 . denotes .
T1592 270-272 PRP denotes We
T1593 273-278 VBD denotes found
T1594 279-283 IN denotes that
T1595 284-287 DT denotes the
T6733 7-10 IN denotes for
R1153 T1535 T1536 det the,activation
R1154 T1536 T1534 pobj activation,for
R1155 T1537 T1536 prep of,activation
R1156 T1538 T1537 pobj NF-κB,of
R1157 T1539 T1536 cc and,activation
R1158 T1540 T1543 advmod possibly,molecules
R1159 T1541 T1543 amod other,molecules
R1160 T1542 T1543 amod signaling,molecules
R1161 T1543 T1536 conj molecules,activation
R1163 T1545 T1546 aux To,test
R1164 T1546 T1551 advcl test,employed
R1165 T1547 T1548 det this,hypothesis
R1166 T1548 T1546 dobj hypothesis,test
R1167 T1549 T1551 punct ",",employed
R1168 T1550 T1551 nsubj we,employed
R1169 T1551 T1551 ROOT employed,employed
R1170 T1552 T1554 amod somatic,gene
R1171 T1553 T1554 compound cell,gene
R1172 T1554 T1551 dobj gene,employed
R1173 T1555 T1554 acl targeting,gene
R1174 T1556 T1557 aux to,ablate
R1175 T1557 T1555 xcomp ablate,targeting
R1176 T1558 T1557 dobj expression,ablate
R1177 T1559 T1558 prep of,expression
R1178 T1560 T1559 pobj HOIP,of
R1179 T1561 T1557 prep in,ablate
R1180 T1562 T1566 det a,line
R1181 T1563 T1565 compound mouse,cell
R1182 T1564 T1565 compound B,cell
R1183 T1565 T1566 compound cell,line
R1184 T1566 T1561 pobj line,in
R1185 T1567 T1569 nsubj that,proven
R1186 T1568 T1569 aux has,proven
R1187 T1569 T1566 relcl proven,line
R1188 T1570 T1571 aux to,be
R1189 T1571 T1569 xcomp be,proven
R1190 T1572 T1574 det a,model
R1191 T1573 T1574 amod useful,model
R1192 T1574 T1571 attr model,be
R1193 T1575 T1574 prep for,model
R1194 T1576 T1577 compound B,cell
R1195 T1577 T1575 pobj cell,for
R1196 T1578 T1577 nummod CD40,cell
R1197 T1579 T1574 acl signaling,model
R1198 T1580 T1579 dobj [,signaling
R1199 T1581 T1580 nummod 7,[
R1200 T1582 T1580 conj ],[
R1201 T1583 T1582 punct ",",]
R1202 T1584 T1586 nmod [,]
R1203 T1585 T1586 nummod 8,]
R1204 T1586 T1582 conj ],]
R1205 T1587 T1586 punct ",",]
R1206 T1588 T1590 det [,]
R1207 T1589 T1590 nummod 9,]
R1208 T1590 T1586 appos ],]
R1209 T1591 T1551 punct .,employed
R1210 T1592 T1593 nsubj We,found
R1211 T1593 T1593 ROOT found,found

GO-BP

Id Subject Object Predicate Lexical cue
T2321 54-63 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T2322 245-254 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T2363 15-34 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB

sentences

Id Subject Object Predicate Lexical cue
T1193 75-269 Sentence denotes To test this hypothesis, we employed somatic cell gene targeting to ablate expression of HOIP in a mouse B cell line that has proven to be a useful model for B cell CD40 signaling [7], [8], [9].
T28 75-269 Sentence denotes To test this hypothesis, we employed somatic cell gene targeting to ablate expression of HOIP in a mouse B cell line that has proven to be a useful model for B cell CD40 signaling [7], [8], [9].

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2277 164-168 Q96EP0 denotes HOIP
T2278 240-244 P25942 denotes CD40

test2

Id Subject Object Predicate Lexical cue
T1087 150-160 Gene_expression denotes expression
T1088 164-168 Protein denotes HOIP
T1089 240-244 Protein denotes CD40
R763 T1088 T1087 themeOf HOIP,expression