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PMC:3148254 / 3426-3647 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1143 21-48 Protein denotes HOIL-1L interacting protein
T1144 50-54 Protein denotes HOIP
T1145 146-155 Binding denotes recruited
T1146 159-163 Protein denotes CD40
T1147 169-174 Protein denotes TRAF2
T1148 175-184 Regulation denotes dependent
T1149 192-201 Positive_regulation denotes following
T1150 202-212 Binding denotes engagement
T1151 216-220 Protein denotes CD40
R795 T1143 T1145 themeOf HOIL-1L interacting protein,recruited
R796 T1144 T1143 equivalentTo HOIP,HOIL-1L interacting protein
R797 T1145 T1148 themeOf recruited,dependent
R798 T1146 T1145 themeOf CD40,recruited
R799 T1147 T1148 causeOf TRAF2,dependent
R800 T1148 T1149 themeOf dependent,following
R801 T1150 T1149 causeOf engagement,following
R802 T1151 T1150 themeOf CD40,engagement

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2601 21-48 Protein denotes HOIL-1L interacting protein
T2602 50-54 Protein denotes HOIP
T2603 59-75 Protein denotes ubiquitin ligase
T2604 159-163 Protein denotes CD40
T2605 169-174 Protein denotes TRAF2
T2606 216-220 Protein denotes CD40
T2607 146-155 Binding denotes recruited
T2608 146-155 Binding denotes recruited
T2609 146-155 Binding denotes recruited
T2610 202-212 Binding denotes engagement
R2006 T2601 T2607 themeOf HOIL-1L interacting protein,recruited
R2007 T2602 T2608 themeOf HOIP,recruited
R2008 T2603 T2609 themeOf ubiquitin ligase,recruited
R2009 T2604 T2607 themeOf CD40,recruited
R2011 T2604 T2608 themeOf CD40,recruited
R2013 T2604 T2609 themeOf CD40,recruited
R2014 T2606 T2610 themeOf CD40,engagement

events-check-again

Id Subject Object Predicate Lexical cue
T2672 21-48 Protein denotes HOIL-1L interacting protein
T2673 50-54 Protein denotes HOIP
T2674 146-155 Binding denotes recruited
T2675 159-163 Protein denotes CD40
T2676 169-174 Protein denotes TRAF2
T2677 175-184 Regulation denotes dependent
T2678 192-201 Positive_regulation denotes following
T2679 202-212 Binding denotes engagement
T2680 216-220 Protein denotes CD40
R2017 T2680 T2679 themeOf CD40,engagement
R2035 T2672 T2674 themeOf HOIL-1L interacting protein,recruited
R2036 T2673 T2672 equivalentTo HOIP,HOIL-1L interacting protein
R2038 T2674 T2677 themeOf recruited,dependent
R2039 T2675 T2674 themeOf CD40,recruited
R2040 T2676 T2677 causeOf TRAF2,dependent
R2041 T2677 T2678 themeOf dependent,following
R2043 T2679 T2678 causeOf engagement,following

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1983 3-15 VB denotes demonstrated
T1984 16-20 IN denotes that
T1985 21-28 NN denotes HOIL-1L
T1986 29-40 VB denotes interacting
T1987 41-48 NN denotes protein
T1988 49-50 -LRB- denotes (
T1989 50-54 NN denotes HOIP
T1990 54-55 -RRB- denotes )
T1991 55-56 -COMMA- denotes ,
T1992 57-58 DT denotes a
T1993 59-68 NN denotes ubiquitin
T1994 69-75 NN denotes ligase
T1995 76-80 WDT denotes that
T1996 81-84 MD denotes can
T1997 85-93 VB denotes catalyze
T1998 94-97 DT denotes the
T1999 98-106 NN denotes assembly
T2000 107-109 IN denotes of
T2001 110-116 JJ denotes linear
T2002 117-130 NN denotes polyubiquitin
T2003 131-137 NN denotes chains
T2004 138-139 -LRB- denotes [
T2005 139-140 CD denotes 5
T2006 140-141 -RRB- denotes ]
T2007 141-142 -COMMA- denotes ,
T2008 143-145 VB denotes is
T2009 146-155 VB denotes recruited
T2010 156-158 TO denotes to
T2011 159-163 NN denotes CD40
T2012 164-166 IN denotes in
T2013 167-168 DT denotes a
T2014 169-184 JJ denotes TRAF2-dependent
T2015 185-191 NN denotes manner
T2016 192-201 VB denotes following
T2017 202-212 NN denotes engagement
T2018 213-215 IN denotes of
T2019 216-220 NN denotes CD40
R1609 T1987 T1985 arg1Of protein,HOIL-1L
R1610 T1987 T1986 arg1Of protein,interacting
R1611 T1987 T1988 arg1Of protein,(
R1612 T1987 T1991 arg1Of protein,","
R1613 T1987 T2008 arg1Of protein,is
R1614 T1987 T2009 arg2Of protein,recruited
R1615 T1989 T1988 arg2Of HOIP,(
R1616 T1990 T1988 arg3Of ),(
R1617 T1994 T1991 arg2Of ligase,","
R1618 T1994 T1992 arg1Of ligase,a
R1619 T1994 T1993 arg1Of ligase,ubiquitin
R1620 T1994 T1995 arg1Of ligase,that
R1621 T1994 T1996 arg1Of ligase,can
R1622 T1994 T1997 arg1Of ligase,catalyze
R1626 T1997 T1996 arg2Of catalyze,can
R1629 T1999 T1997 arg2Of assembly,catalyze
R1631 T1999 T1998 arg1Of assembly,the
R1632 T1999 T2000 arg1Of assembly,of
R1634 T2003 T2000 arg2Of chains,of
R1635 T2003 T2001 arg1Of chains,linear
R1636 T2003 T2002 arg1Of chains,polyubiquitin
R1637 T2003 T2004 arg1Of chains,[
R1638 T2005 T2004 arg2Of 5,[
R1640 T2006 T2004 arg3Of ],[
R1642 T2009 T1983 arg2Of recruited,demonstrated
R1643 T2009 T1984 arg1Of recruited,that
R1644 T2009 T2007 arg1Of recruited,","
R1645 T2009 T2008 arg2Of recruited,is
R1646 T2009 T2010 arg1Of recruited,to
R1647 T2009 T2012 arg1Of recruited,in
R1648 T2009 T2016 arg1Of recruited,following
R1649 T2011 T2010 arg2Of CD40,to
R1652 T2015 T2012 arg2Of manner,in
R1653 T2015 T2013 arg1Of manner,a
R1654 T2015 T2014 arg1Of manner,TRAF2-dependent
R1655 T2017 T2016 arg2Of engagement,following
R1656 T2017 T2018 arg1Of engagement,of
R1660 T2019 T2018 arg2Of CD40,of

2_test

Id Subject Object Predicate Lexical cue
21829693-17006537-89653753 139-140 17006537 denotes 5
T1216 139-140 17006537 denotes 5

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1466 3-15 VBD denotes demonstrated
T1467 16-20 IN denotes that
T1468 21-28 JJ denotes HOIL-1L
T1469 29-40 VBG denotes interacting
T1470 41-48 NN denotes protein
T1471 49-50 -LRB- denotes (
T1472 50-54 NNP denotes HOIP
T1473 54-55 -RRB- denotes )
T1474 55-56 , denotes ,
T1475 57-58 DT denotes a
T1476 59-68 NN denotes ubiquitin
T1477 69-75 NN denotes ligase
T1478 76-80 WDT denotes that
T1479 81-84 MD denotes can
T1480 85-93 VB denotes catalyze
T1481 94-97 DT denotes the
T1482 98-106 NN denotes assembly
T1483 107-109 IN denotes of
T1484 110-116 JJ denotes linear
T1485 117-130 NN denotes polyubiquitin
T1486 131-137 NNS denotes chains
T1487 138-139 VBP denotes [
T1488 139-140 CD denotes 5
T1489 140-141 NNP denotes ]
T1490 141-142 , denotes ,
T1491 143-145 VBZ denotes is
T1492 146-155 VBN denotes recruited
T1493 156-158 TO denotes to
T1494 159-163 NNP denotes CD40
T1495 164-166 IN denotes in
T1496 167-168 DT denotes a
T1497 169-184 JJ denotes TRAF2-dependent
T1498 185-191 NN denotes manner
T1499 192-201 VBG denotes following
T1500 202-212 NN denotes engagement
T1501 213-215 IN denotes of
T1502 216-220 CD denotes CD40
R1084 T1466 T1466 ROOT demonstrated,demonstrated
R1085 T1467 T1487 mark that,[
R1086 T1468 T1470 amod HOIL-1L,protein
R1087 T1469 T1470 amod interacting,protein
R1088 T1470 T1487 nsubj protein,[
R1089 T1471 T1470 punct (,protein
R1090 T1472 T1470 appos HOIP,protein
R1091 T1473 T1470 punct ),protein
R1092 T1474 T1470 punct ",",protein
R1093 T1475 T1477 det a,ligase
R1094 T1476 T1477 compound ubiquitin,ligase
R1095 T1477 T1470 appos ligase,protein
R1096 T1478 T1480 nsubj that,catalyze
R1097 T1479 T1480 aux can,catalyze
R1098 T1480 T1477 relcl catalyze,ligase
R1099 T1481 T1482 det the,assembly
R1100 T1482 T1480 dobj assembly,catalyze
R1101 T1483 T1482 prep of,assembly
R1102 T1484 T1486 amod linear,chains
R1103 T1485 T1486 compound polyubiquitin,chains
R1104 T1486 T1483 pobj chains,of
R1105 T1487 T1466 ccomp [,demonstrated
R1106 T1488 T1489 nummod 5,]
R1107 T1489 T1487 dobj ],[
R1108 T1490 T1492 punct ",",recruited
R1109 T1491 T1492 auxpass is,recruited
R1110 T1492 T1466 conj recruited,demonstrated
R1111 T1493 T1492 prep to,recruited
R1112 T1494 T1493 pobj CD40,to
R1113 T1495 T1492 prep in,recruited
R1114 T1496 T1498 det a,manner
R1115 T1497 T1498 amod TRAF2-dependent,manner
R1116 T1498 T1495 pobj manner,in
R1117 T1499 T1492 prep following,recruited
R1118 T1500 T1499 pobj engagement,following
R1119 T1501 T1500 prep of,engagement
R1120 T1502 T1501 pobj CD40,of

GO-BP

Id Subject Object Predicate Lexical cue
T2361 117-130 http://purl.obolibrary.org/obo/GO_0000209 denotes polyubiquitin

GO-MF

Id Subject Object Predicate Lexical cue
T2403 59-68 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2268 21-48 Q96EP0 denotes HOIL-1L interacting protein
T2269 50-54 Q96EP0 denotes HOIP
T2270 159-163 P25942 denotes CD40
T2271 169-174 Q12933 denotes TRAF2
T2272 216-220 P25942 denotes CD40

test2

Id Subject Object Predicate Lexical cue
T1073 21-48 Protein denotes HOIL-1L interacting protein
T1074 50-54 Protein denotes HOIP
T1075 146-155 Binding denotes recruited
T1076 159-163 Protein denotes CD40
T1077 169-174 Protein denotes TRAF2
T1078 175-184 Regulation denotes dependent
T1079 192-201 Positive_regulation denotes following
T1080 202-212 Binding denotes engagement
T1081 216-220 Protein denotes CD40
R754 T1073 T1075 themeOf HOIL-1L interacting protein,recruited
R755 T1074 T1073 equivalentTo HOIP,HOIL-1L interacting protein
R756 T1075 T1079 themeOf recruited,following
R757 T1075 T1078 themeOf recruited,dependent
R758 T1076 T1075 themeOf CD40,recruited
R759 T1077 T1078 causeOf TRAF2,dependent
R760 T1078 T1079 themeOf dependent,following
R761 T1080 T1079 causeOf engagement,following
R762 T1081 T1080 themeOf CD40,engagement