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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1143 86-113 Protein denotes HOIL-1L interacting protein
T1144 115-119 Protein denotes HOIP
T1145 211-220 Binding denotes recruited
T1146 224-228 Protein denotes CD40
T1147 234-239 Protein denotes TRAF2
T1148 240-249 Regulation denotes dependent
T1149 257-266 Positive_regulation denotes following
T1150 267-277 Binding denotes engagement
T1151 281-285 Protein denotes CD40
R795 T1143 T1145 themeOf HOIL-1L interacting protein,recruited
R796 T1144 T1143 equivalentTo HOIP,HOIL-1L interacting protein
R797 T1145 T1148 themeOf recruited,dependent
R798 T1146 T1145 themeOf CD40,recruited
R799 T1147 T1148 causeOf TRAF2,dependent
R800 T1148 T1149 themeOf dependent,following
R801 T1150 T1149 causeOf engagement,following
R802 T1151 T1150 themeOf CD40,engagement

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2601 86-113 Protein denotes HOIL-1L interacting protein
T2602 115-119 Protein denotes HOIP
T2603 124-140 Protein denotes ubiquitin ligase
T2604 224-228 Protein denotes CD40
T2605 234-239 Protein denotes TRAF2
T2606 281-285 Protein denotes CD40
T2607 211-220 Binding denotes recruited
T2608 211-220 Binding denotes recruited
T2609 211-220 Binding denotes recruited
T2610 267-277 Binding denotes engagement
R2006 T2601 T2607 themeOf HOIL-1L interacting protein,recruited
R2007 T2602 T2608 themeOf HOIP,recruited
R2008 T2603 T2609 themeOf ubiquitin ligase,recruited
R2009 T2604 T2607 themeOf CD40,recruited
R2011 T2604 T2608 themeOf CD40,recruited
R2013 T2604 T2609 themeOf CD40,recruited
R2014 T2606 T2610 themeOf CD40,engagement

events-check-again

Id Subject Object Predicate Lexical cue
T2672 86-113 Protein denotes HOIL-1L interacting protein
T2673 115-119 Protein denotes HOIP
T2674 211-220 Binding denotes recruited
T2675 224-228 Protein denotes CD40
T2676 234-239 Protein denotes TRAF2
T2677 240-249 Regulation denotes dependent
T2678 257-266 Positive_regulation denotes following
T2679 267-277 Binding denotes engagement
T2680 281-285 Protein denotes CD40
R2017 T2680 T2679 themeOf CD40,engagement
R2035 T2672 T2674 themeOf HOIL-1L interacting protein,recruited
R2036 T2673 T2672 equivalentTo HOIP,HOIL-1L interacting protein
R2038 T2674 T2677 themeOf recruited,dependent
R2039 T2675 T2674 themeOf CD40,recruited
R2040 T2676 T2677 causeOf TRAF2,dependent
R2041 T2677 T2678 themeOf dependent,following
R2043 T2679 T2678 causeOf engagement,following

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1972 3-6 DT denotes the
T1973 7-17 NN denotes activation
T1974 18-20 IN denotes of
T1975 21-31 JJ denotes downstream
T1976 32-41 NN denotes signaling
T1977 42-50 NN denotes pathways
T1978 51-52 -LRB- denotes [
T1979 52-53 CD denotes 4
T1980 53-54 -RRB- denotes ]
T1981 56-58 PRP denotes We
T1982 59-67 RB denotes recently
T1983 68-80 VB denotes demonstrated
T1984 81-85 IN denotes that
T1985 86-93 NN denotes HOIL-1L
T1986 94-105 VB denotes interacting
T1987 106-113 NN denotes protein
T1988 114-115 -LRB- denotes (
T1989 115-119 NN denotes HOIP
T1990 119-120 -RRB- denotes )
T1991 120-121 -COMMA- denotes ,
T1992 122-123 DT denotes a
T1993 124-133 NN denotes ubiquitin
T1994 134-140 NN denotes ligase
T1995 141-145 WDT denotes that
T1996 146-149 MD denotes can
T1997 150-158 VB denotes catalyze
T1998 159-162 DT denotes the
T1999 163-171 NN denotes assembly
T2000 172-174 IN denotes of
T2001 175-181 JJ denotes linear
T2002 182-195 NN denotes polyubiquitin
T2003 196-202 NN denotes chains
T2004 203-204 -LRB- denotes [
T2005 204-205 CD denotes 5
T2006 205-206 -RRB- denotes ]
T2007 206-207 -COMMA- denotes ,
T2008 208-210 VB denotes is
T2009 211-220 VB denotes recruited
T2010 221-223 TO denotes to
T2011 224-228 NN denotes CD40
T2012 229-231 IN denotes in
T2013 232-233 DT denotes a
T2014 234-249 JJ denotes TRAF2-dependent
T2015 250-256 NN denotes manner
T2016 257-266 VB denotes following
T2017 267-277 NN denotes engagement
T2018 278-280 IN denotes of
T2019 281-285 NN denotes CD40
T2020 286-288 IN denotes by
R1594 T1973 T1972 arg1Of activation,the
R1595 T1973 T1974 arg1Of activation,of
R1596 T1977 T1974 arg2Of pathways,of
R1597 T1977 T1975 arg1Of pathways,downstream
R1598 T1977 T1976 arg1Of pathways,signaling
R1599 T1977 T1978 arg1Of pathways,[
R1601 T1979 T1978 arg2Of 4,[
R1602 T1980 T1978 arg3Of ],[
R1603 T1981 T1983 arg1Of We,demonstrated
R1606 T1983 T1982 arg1Of demonstrated,recently
R1609 T1987 T1985 arg1Of protein,HOIL-1L
R1610 T1987 T1986 arg1Of protein,interacting
R1611 T1987 T1988 arg1Of protein,(
R1612 T1987 T1991 arg1Of protein,","
R1613 T1987 T2008 arg1Of protein,is
R1614 T1987 T2009 arg2Of protein,recruited
R1615 T1989 T1988 arg2Of HOIP,(
R1616 T1990 T1988 arg3Of ),(
R1617 T1994 T1991 arg2Of ligase,","
R1618 T1994 T1992 arg1Of ligase,a
R1619 T1994 T1993 arg1Of ligase,ubiquitin
R1620 T1994 T1995 arg1Of ligase,that
R1621 T1994 T1996 arg1Of ligase,can
R1622 T1994 T1997 arg1Of ligase,catalyze
R1626 T1997 T1996 arg2Of catalyze,can
R1629 T1999 T1997 arg2Of assembly,catalyze
R1631 T1999 T1998 arg1Of assembly,the
R1632 T1999 T2000 arg1Of assembly,of
R1634 T2003 T2000 arg2Of chains,of
R1635 T2003 T2001 arg1Of chains,linear
R1636 T2003 T2002 arg1Of chains,polyubiquitin
R1637 T2003 T2004 arg1Of chains,[
R1638 T2005 T2004 arg2Of 5,[
R1640 T2006 T2004 arg3Of ],[
R1642 T2009 T1983 arg2Of recruited,demonstrated
R1643 T2009 T1984 arg1Of recruited,that
R1644 T2009 T2007 arg1Of recruited,","
R1645 T2009 T2008 arg2Of recruited,is
R1646 T2009 T2010 arg1Of recruited,to
R1647 T2009 T2012 arg1Of recruited,in
R1648 T2009 T2016 arg1Of recruited,following
R1649 T2011 T2010 arg2Of CD40,to
R1652 T2015 T2012 arg2Of manner,in
R1653 T2015 T2013 arg1Of manner,a
R1654 T2015 T2014 arg1Of manner,TRAF2-dependent
R1655 T2017 T2016 arg2Of engagement,following
R1656 T2017 T2018 arg1Of engagement,of
R1657 T2017 T2020 arg1Of engagement,by
R1660 T2019 T2018 arg2Of CD40,of

2_test

Id Subject Object Predicate Lexical cue
21829693-17633023-89653752 52-53 17633023 denotes 4
21829693-17006537-89653753 204-205 17006537 denotes 5
T85269 52-53 17633023 denotes 4
T1216 204-205 17006537 denotes 5

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1454 3-6 DT denotes the
T1455 7-17 NN denotes activation
T1456 18-20 IN denotes of
T1457 21-31 JJ denotes downstream
T1458 32-41 VBG denotes signaling
T1459 42-50 NNS denotes pathways
T1460 51-52 NNP denotes [
T1461 52-53 CD denotes 4
T1462 53-54 NNP denotes ]
T1463 54-55 . denotes .
T1464 56-58 PRP denotes We
T1465 59-67 RB denotes recently
T1466 68-80 VBD denotes demonstrated
T1467 81-85 IN denotes that
T1468 86-93 JJ denotes HOIL-1L
T1469 94-105 VBG denotes interacting
T1470 106-113 NN denotes protein
T1471 114-115 -LRB- denotes (
T1472 115-119 NNP denotes HOIP
T1473 119-120 -RRB- denotes )
T1474 120-121 , denotes ,
T1475 122-123 DT denotes a
T1476 124-133 NN denotes ubiquitin
T1477 134-140 NN denotes ligase
T1478 141-145 WDT denotes that
T1479 146-149 MD denotes can
T1480 150-158 VB denotes catalyze
T1481 159-162 DT denotes the
T1482 163-171 NN denotes assembly
T1483 172-174 IN denotes of
T1484 175-181 JJ denotes linear
T1485 182-195 NN denotes polyubiquitin
T1486 196-202 NNS denotes chains
T1487 203-204 VBP denotes [
T1488 204-205 CD denotes 5
T1489 205-206 NNP denotes ]
T1490 206-207 , denotes ,
T1491 208-210 VBZ denotes is
T1492 211-220 VBN denotes recruited
T1493 221-223 TO denotes to
T1494 224-228 NNP denotes CD40
T1495 229-231 IN denotes in
T1496 232-233 DT denotes a
T1497 234-249 JJ denotes TRAF2-dependent
T1498 250-256 NN denotes manner
T1499 257-266 VBG denotes following
T1500 267-277 NN denotes engagement
T1501 278-280 IN denotes of
T1502 281-285 CD denotes CD40
T1503 286-288 IN denotes by
R1072 T1454 T1455 det the,activation
R1074 T1456 T1455 prep of,activation
R1075 T1457 T1459 amod downstream,pathways
R1076 T1458 T1459 compound signaling,pathways
R1077 T1459 T1456 pobj pathways,of
R1078 T1460 T1462 nmod [,]
R1079 T1461 T1462 nummod 4,]
R1080 T1462 T1455 appos ],activation
R1082 T1464 T1466 nsubj We,demonstrated
R1083 T1465 T1466 advmod recently,demonstrated
R1084 T1466 T1466 ROOT demonstrated,demonstrated
R1085 T1467 T1487 mark that,[
R1086 T1468 T1470 amod HOIL-1L,protein
R1087 T1469 T1470 amod interacting,protein
R1088 T1470 T1487 nsubj protein,[
R1089 T1471 T1470 punct (,protein
R1090 T1472 T1470 appos HOIP,protein
R1091 T1473 T1470 punct ),protein
R1092 T1474 T1470 punct ",",protein
R1093 T1475 T1477 det a,ligase
R1094 T1476 T1477 compound ubiquitin,ligase
R1095 T1477 T1470 appos ligase,protein
R1096 T1478 T1480 nsubj that,catalyze
R1097 T1479 T1480 aux can,catalyze
R1098 T1480 T1477 relcl catalyze,ligase
R1099 T1481 T1482 det the,assembly
R1100 T1482 T1480 dobj assembly,catalyze
R1101 T1483 T1482 prep of,assembly
R1102 T1484 T1486 amod linear,chains
R1103 T1485 T1486 compound polyubiquitin,chains
R1104 T1486 T1483 pobj chains,of
R1105 T1487 T1466 ccomp [,demonstrated
R1106 T1488 T1489 nummod 5,]
R1107 T1489 T1487 dobj ],[
R1108 T1490 T1492 punct ",",recruited
R1109 T1491 T1492 auxpass is,recruited
R1110 T1492 T1466 conj recruited,demonstrated
R1111 T1493 T1492 prep to,recruited
R1112 T1494 T1493 pobj CD40,to
R1113 T1495 T1492 prep in,recruited
R1114 T1496 T1498 det a,manner
R1115 T1497 T1498 amod TRAF2-dependent,manner
R1116 T1498 T1495 pobj manner,in
R1117 T1499 T1492 prep following,recruited
R1118 T1500 T1499 pobj engagement,following
R1119 T1501 T1500 prep of,engagement
R1120 T1502 T1501 pobj CD40,of
R1121 T1503 T1500 prep by,engagement

GO-BP

Id Subject Object Predicate Lexical cue
T2319 32-41 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T2342 32-50 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathways
T2360 32-53 http://purl.obolibrary.org/obo/GO_0007214 denotes signaling pathways [4
T2361 182-195 http://purl.obolibrary.org/obo/GO_0000209 denotes polyubiquitin

GO-MF

Id Subject Object Predicate Lexical cue
T2403 124-133 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2268 86-113 Q96EP0 denotes HOIL-1L interacting protein
T2269 115-119 Q96EP0 denotes HOIP
T2270 224-228 P25942 denotes CD40
T2271 234-239 Q12933 denotes TRAF2
T2272 281-285 P25942 denotes CD40

test2

Id Subject Object Predicate Lexical cue
T1073 86-113 Protein denotes HOIL-1L interacting protein
T1074 115-119 Protein denotes HOIP
T1075 211-220 Binding denotes recruited
T1076 224-228 Protein denotes CD40
T1077 234-239 Protein denotes TRAF2
T1078 240-249 Regulation denotes dependent
T1079 257-266 Positive_regulation denotes following
T1080 267-277 Binding denotes engagement
T1081 281-285 Protein denotes CD40
R754 T1073 T1075 themeOf HOIL-1L interacting protein,recruited
R755 T1074 T1073 equivalentTo HOIP,HOIL-1L interacting protein
R756 T1075 T1079 themeOf recruited,following
R757 T1075 T1078 themeOf recruited,dependent
R758 T1076 T1075 themeOf CD40,recruited
R759 T1077 T1078 causeOf TRAF2,dependent
R760 T1078 T1079 themeOf dependent,following
R761 T1080 T1079 causeOf engagement,following
R762 T1081 T1080 themeOf CD40,engagement