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PMC:3148254 / 32170-33090 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T13864 50-54 Protein denotes CD40
T13865 109-119 Gene_expression denotes expressing
T13866 126-131 Protein denotes CD154
T13867 133-144 Protein denotes CD40 ligand
R10898 T13866 T13865 themeOf CD154,expressing
R10899 T13867 T13866 equivalentTo CD40 ligand,CD154

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T14258 0-5 Protein denotes NF-κB
T14259 10-13 Protein denotes JNK
T14260 14-24 Positive_regulation denotes activation
T14261 50-54 Protein denotes CD40
T14262 126-131 Protein denotes CD154
T14263 133-137 Protein denotes CD40
T14264 109-119 Gene_expression denotes expressing
T14265 109-119 Gene_expression denotes expressing
T14266 322-325 Protein denotes Fig
T14267 692-695 Protein denotes Fig
R11252 T14258 T14260 themeOf NF-κB,activation
R11253 T14262 T14264 themeOf CD154,expressing
R11254 T14263 T14265 themeOf CD40,expressing

events-check-again

Id Subject Object Predicate Lexical cue
T14268 50-54 Protein denotes CD40
T14269 109-119 Gene_expression denotes expressing
T14270 126-131 Protein denotes CD154
T14271 133-144 Protein denotes CD40 ligand
R11255 T14270 T14269 themeOf CD154,expressing
R11256 T14271 T14270 equivalentTo CD40 ligand,CD154

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14056 0-5 NN denotes NF-κB
T14057 6-9 CC denotes and
T14058 10-13 NN denotes JNK
T14059 14-24 NN denotes activation
T14060 25-31 NN denotes assays
T14061 32-35 IN denotes For
T14062 36-46 NN denotes activation
T14063 47-49 IN denotes of
T14064 50-54 NN denotes CD40
T14065 55-64 NN denotes signaling
T14066 64-65 -COMMA- denotes ,
T14067 66-71 CD denotes 5×104
T14068 72-75 NN denotes HI5
T14069 76-82 NN denotes insect
T14070 83-88 NN denotes cells
T14071 89-91 CC denotes or
T14072 92-95 NN denotes HI5
T14073 96-102 NN denotes insect
T14074 103-108 NN denotes cells
T14075 109-119 VB denotes expressing
T14076 120-125 NN denotes mouse
T14077 126-131 NN denotes CD154
T14078 132-133 -LRB- denotes (
T14079 133-137 NN denotes CD40
T14080 138-144 NN denotes ligand
T14081 144-145 -RRB- denotes )
T14082 146-150 VB denotes were
T14083 151-156 VB denotes added
T14084 157-159 TO denotes to
T14085 160-165 CD denotes 1×106
T14086 166-167 NN denotes B
T14087 168-173 NN denotes cells
T14088 175-180 NN denotes Cells
T14089 181-185 VB denotes were
T14090 186-197 VB denotes centrifuged
T14091 198-201 IN denotes for
T14092 202-203 CD denotes 1
T14093 204-210 NN denotes minute
T14094 211-213 IN denotes at
T14095 214-217 CD denotes 400
T14096 218-219 SYM denotes x
T14097 220-221 NN denotes g
T14098 222-223 -LRB- denotes (
T14099 223-225 TO denotes to
T14100 226-233 VB denotes promote
T14101 234-241 NN denotes contact
T14102 242-249 IN denotes between
T14103 250-256 NN denotes ligand
T14104 257-262 NN denotes cells
T14105 263-266 CC denotes and
T14106 267-268 NN denotes B
T14107 269-274 NN denotes cells
T14108 274-275 -RRB- denotes )
T14109 276-280 RB denotes then
T14110 281-290 VB denotes incubated
T14111 291-293 IN denotes at
T14112 294-298 NN denotes 37°C
T14113 299-302 IN denotes for
T14114 303-308 NN denotes times
T14115 309-318 VB denotes indicated
T14116 319-321 IN denotes in
T14117 322-326 NNP denotes Fig.
T14118 327-328 CD denotes 4
T14119 330-339 VB denotes Following
T14120 340-351 NN denotes stimulation
T14121 351-352 -COMMA- denotes ,
T14122 353-358 NN denotes cells
T14123 359-363 VB denotes were
T14124 364-371 VB denotes chilled
T14125 372-374 IN denotes on
T14126 375-378 NN denotes ice
T14127 379-382 IN denotes for
T14128 383-384 CD denotes 2
T14129 385-392 NN denotes minutes
T14130 394-398 NN denotes Cell
T14131 399-406 NN denotes pellets
T14132 407-411 VB denotes were
T14133 412-421 VB denotes dissolved
T14134 422-424 IN denotes in
T14135 425-427 NN denotes 2X
T14136 428-436 NN denotes SDS-PAGE
T14137 437-444 VB denotes loading
T14138 445-451 NN denotes buffer
T14139 451-452 -COMMA- denotes ,
T14140 453-462 VB denotes sonicated
T14141 462-463 -COMMA- denotes ,
T14142 464-467 CC denotes and
T14143 468-474 VB denotes heated
T14144 475-478 IN denotes for
T14145 479-480 CD denotes 5
T14146 481-488 NN denotes minutes
T14147 489-491 IN denotes at
T14148 492-497 NNP denotes 95°C.
T14149 498-503 NNP denotes Total
T14150 504-508 NN denotes cell
T14151 509-516 NN denotes lysates
T14152 517-518 -LRB- denotes (
T14153 518-523 CD denotes 1×105
T14154 524-528 NN denotes cell
T14155 529-540 NN denotes equivalents
T14156 541-544 IN denotes per
T14157 545-549 NN denotes lane
T14158 549-550 -RRB- denotes )
T14159 551-555 VB denotes were
T14160 556-568 VB denotes fractionated
T14161 569-571 IN denotes by
T14162 572-580 NN denotes SDS-PAGE
T14163 581-584 CC denotes and
T14164 585-592 VB denotes blotted
T14165 593-595 TO denotes to
T14166 596-610 NN denotes polyvinylidine
T14167 611-619 NN denotes fluoride
T14168 620-621 -LRB- denotes (
T14169 621-625 NN denotes PVDF
T14170 625-626 -RRB- denotes )
T14171 627-636 NN denotes membranes
T14172 638-647 NN denotes Membranes
T14173 648-652 VB denotes were
T14174 653-659 VB denotes probed
T14175 660-664 IN denotes with
T14176 665-675 NN denotes antibodies
T14177 676-678 IN denotes as
T14178 679-688 VB denotes indicated
T14179 689-691 IN denotes in
T14180 692-696 NNP denotes Fig.
T14181 697-698 CD denotes 4
T14182 700-716 JJ denotes Chemiluminescent
T14183 717-726 NN denotes detection
T14184 727-728 -LRB- denotes (
T14185 728-734 NNP denotes Pierce
T14186 735-748 NNP denotes Biotechnology
T14187 748-749 -RRB- denotes )
T14188 750-753 VB denotes was
T14189 754-758 VB denotes used
T14190 759-762 IN denotes for
T14191 763-766 DT denotes the
T14192 767-780 NN denotes visualization
T14193 781-783 IN denotes of
T14194 784-789 NN denotes bands
T14195 790-792 IN denotes on
T14196 793-800 JJ denotes Western
T14197 801-806 NN denotes blots
T14198 808-814 NN denotes Images
T14199 815-817 IN denotes of
T14200 818-823 NN denotes blots
T14201 824-828 VB denotes were
T14202 829-837 VB denotes recorded
T14203 838-842 IN denotes with
T14204 843-844 DT denotes a
T14205 845-854 JJ denotes low-light
T14206 855-862 NN denotes imaging
T14207 863-869 NN denotes system
T14208 870-871 -LRB- denotes (
T14209 871-878 NN denotes LAS4000
T14210 878-879 -COMMA- denotes ,
T14211 880-884 NNP denotes Fuji
T14212 885-892 NNP denotes Medical
T14213 893-900 NNP denotes Systems
T14214 900-901 -RRB- denotes )
T14215 902-905 CC denotes and
T14216 906-908 IN denotes on
T14217 909-914 NN denotes X-ray
T14218 915-919 NN denotes film
R11080 T14056 T14057 arg1Of NF-κB,and
R11081 T14058 T14057 arg2Of JNK,and
R11082 T14060 T14056 arg1Of assays,NF-κB
R11083 T14060 T14058 arg1Of assays,JNK
R11084 T14060 T14059 arg1Of assays,activation
R11085 T14062 T14061 arg2Of activation,For
R11086 T14062 T14063 arg1Of activation,of
R11087 T14065 T14063 arg2Of signaling,of
R11088 T14065 T14064 arg1Of signaling,CD40
R11089 T14070 T14067 arg1Of cells,5×104
R11090 T14070 T14068 arg1Of cells,HI5
R11091 T14070 T14069 arg1Of cells,insect
R11092 T14070 T14071 arg1Of cells,or
R11093 T14071 T14075 arg1Of or,expressing
R11094 T14071 T14082 arg1Of or,were
R11095 T14071 T14083 arg2Of or,added
R11096 T14074 T14071 arg2Of cells,or
R11097 T14074 T14072 arg1Of cells,HI5
R11098 T14074 T14073 arg1Of cells,insect
R11099 T14077 T14075 arg2Of CD154,expressing
R11100 T14077 T14076 arg1Of CD154,mouse
R11101 T14077 T14078 arg1Of CD154,(
R11102 T14080 T14078 arg2Of ligand,(
R11103 T14080 T14079 arg1Of ligand,CD40
R11104 T14081 T14078 arg3Of ),(
R11105 T14083 T14061 arg1Of added,For
R11106 T14083 T14066 arg1Of added,","
R11107 T14083 T14082 arg2Of added,were
R11108 T14083 T14084 arg1Of added,to
R11109 T14087 T14084 arg2Of cells,to
R11110 T14087 T14085 arg1Of cells,1×106
R11111 T14087 T14086 arg1Of cells,B
R11112 T14088 T14089 arg1Of Cells,were
R11113 T14088 T14090 arg2Of Cells,centrifuged
R11114 T14090 T14089 arg2Of centrifuged,were
R11115 T14090 T14091 arg1Of centrifuged,for
R11116 T14090 T14094 arg1Of centrifuged,at
R11117 T14090 T14099 modOf centrifuged,to
R11118 T14093 T14091 arg2Of minute,for
R11119 T14093 T14092 arg1Of minute,1
R11120 T14097 T14094 arg2Of g,at
R11121 T14097 T14095 arg1Of g,400
R11122 T14097 T14096 arg1Of g,x
R11123 T14097 T14098 arg1Of g,(
R11124 T14100 T14099 arg1Of promote,to
R11125 T14101 T14100 arg2Of contact,promote
R11126 T14101 T14102 arg1Of contact,between
R11127 T14104 T14103 arg1Of cells,ligand
R11128 T14104 T14105 arg1Of cells,and
R11129 T14105 T14102 arg2Of and,between
R11130 T14105 T14108 arg1Of and,)
R11131 T14105 T14110 arg2Of and,incubated
R11132 T14107 T14105 arg2Of cells,and
R11133 T14107 T14106 arg1Of cells,B
R11134 T14110 T14109 arg1Of incubated,then
R11135 T14110 T14111 arg1Of incubated,at
R11136 T14112 T14111 arg2Of 37°C,at
R11137 T14112 T14113 arg1Of 37°C,for
R11138 T14114 T14113 arg2Of times,for
R11139 T14114 T14115 arg2Of times,indicated
R11140 T14115 T14116 arg1Of indicated,in
R11141 T14117 T14116 arg2Of Fig.,in
R11142 T14117 T14118 arg1Of Fig.,4
R11143 T14120 T14119 arg2Of stimulation,Following
R11144 T14122 T14123 arg1Of cells,were
R11145 T14122 T14124 arg2Of cells,chilled
R11146 T14124 T14119 arg1Of chilled,Following
R11147 T14124 T14121 arg1Of chilled,","
R11148 T14124 T14123 arg2Of chilled,were
R11149 T14124 T14125 arg1Of chilled,on
R11150 T14124 T14127 arg1Of chilled,for
R11151 T14126 T14125 arg2Of ice,on
R11152 T14129 T14127 arg2Of minutes,for
R11153 T14129 T14128 arg1Of minutes,2
R11154 T14131 T14130 arg1Of pellets,Cell
R11155 T14131 T14132 arg1Of pellets,were
R11156 T14131 T14133 arg2Of pellets,dissolved
R11157 T14131 T14140 arg2Of pellets,sonicated
R11158 T14131 T14143 arg2Of pellets,heated
R11159 T14133 T14134 arg1Of dissolved,in
R11160 T14133 T14139 arg1Of dissolved,","
R11161 T14136 T14134 arg2Of SDS-PAGE,in
R11162 T14136 T14135 arg1Of SDS-PAGE,2X
R11163 T14136 T14137 arg1Of SDS-PAGE,loading
R11164 T14138 T14137 arg2Of buffer,loading
R11165 T14139 T14142 arg1Of ",",and
R11166 T14140 T14139 arg2Of sonicated,","
R11167 T14142 T14132 arg2Of and,were
R11168 T14142 T14141 arg1Of and,","
R11169 T14143 T14142 arg2Of heated,and
R11170 T14143 T14144 arg1Of heated,for
R11171 T14146 T14144 arg2Of minutes,for
R11172 T14146 T14145 arg1Of minutes,5
R11173 T14146 T14147 arg1Of minutes,at
R11174 T14149 T14148 arg1Of Total,95°C.
R11175 T14149 T14159 modOf Total,were
R11176 T14151 T14150 arg1Of lysates,cell
R11177 T14151 T14152 arg1Of lysates,(
R11178 T14151 T14159 arg1Of lysates,were
R11179 T14151 T14160 arg2Of lysates,fractionated
R11180 T14151 T14164 arg2Of lysates,blotted
R11181 T14155 T14152 arg2Of equivalents,(
R11182 T14155 T14153 arg1Of equivalents,1×105
R11183 T14155 T14154 arg1Of equivalents,cell
R11184 T14155 T14156 arg1Of equivalents,per
R11185 T14157 T14156 arg2Of lane,per
R11186 T14158 T14152 arg3Of ),(
R11187 T14160 T14163 arg1Of fractionated,and
R11188 T14162 T14160 arg1Of SDS-PAGE,fractionated
R11189 T14162 T14161 arg2Of SDS-PAGE,by
R11190 T14163 T14159 arg2Of and,were
R11191 T14164 T14163 arg2Of blotted,and
R11192 T14164 T14165 arg1Of blotted,to
R11193 T14167 T14165 arg2Of fluoride,to
R11194 T14167 T14166 arg1Of fluoride,polyvinylidine
R11195 T14167 T14168 arg1Of fluoride,(
R11196 T14169 T14168 arg2Of PVDF,(
R11197 T14170 T14168 arg3Of ),(
R11198 T14171 T14147 arg2Of membranes,at
R11199 T14171 T14149 arg1Of membranes,Total
R11200 T14172 T14173 arg1Of Membranes,were
R11201 T14172 T14174 arg2Of Membranes,probed
R11202 T14174 T14173 arg2Of probed,were
R11203 T14174 T14175 arg1Of probed,with
R11204 T14174 T14177 arg1Of probed,as
R11205 T14176 T14175 arg2Of antibodies,with
R11206 T14178 T14177 arg2Of indicated,as
R11207 T14178 T14179 arg1Of indicated,in
R11208 T14180 T14179 arg2Of Fig.,in
R11209 T14180 T14181 arg1Of Fig.,4
R11210 T14183 T14182 arg1Of detection,Chemiluminescent
R11211 T14183 T14184 arg1Of detection,(
R11212 T14183 T14188 arg1Of detection,was
R11213 T14183 T14189 arg2Of detection,used
R11214 T14186 T14184 arg2Of Biotechnology,(
R11215 T14186 T14185 arg1Of Biotechnology,Pierce
R11216 T14187 T14184 arg3Of ),(
R11217 T14189 T14188 arg2Of used,was
R11218 T14189 T14190 arg1Of used,for
R11219 T14192 T14190 arg2Of visualization,for
R11220 T14192 T14191 arg1Of visualization,the
R11221 T14192 T14193 arg1Of visualization,of
R11222 T14192 T14195 arg1Of visualization,on
R11223 T14194 T14193 arg2Of bands,of
R11224 T14197 T14195 arg2Of blots,on
R11225 T14197 T14196 arg1Of blots,Western
R11226 T14198 T14199 arg1Of Images,of
R11227 T14198 T14201 arg1Of Images,were
R11228 T14198 T14202 arg2Of Images,recorded
R11229 T14200 T14199 arg2Of blots,of
R11230 T14202 T14201 arg2Of recorded,were
R11231 T14202 T14203 arg1Of recorded,with
R11232 T14202 T14216 arg1Of recorded,on
R11233 T14203 T14215 arg1Of with,and
R11234 T14207 T14203 arg2Of system,with
R11235 T14207 T14204 arg1Of system,a
R11236 T14207 T14205 arg1Of system,low-light
R11237 T14207 T14206 arg1Of system,imaging
R11238 T14207 T14208 arg1Of system,(
R11239 T14209 T14208 arg2Of LAS4000,(
R11240 T14209 T14210 arg1Of LAS4000,","
R11241 T14213 T14210 arg2Of Systems,","
R11242 T14213 T14211 arg1Of Systems,Fuji
R11243 T14213 T14212 arg1Of Systems,Medical
R11244 T14214 T14208 arg3Of ),(
R11245 T14216 T14215 arg2Of on,and
R11246 T14218 T14216 arg2Of film,on
R11247 T14218 T14217 arg1Of film,X-ray

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13876 0-5 NN denotes NF-κB
T13877 6-9 CC denotes and
T13878 10-13 NNP denotes JNK
T13879 14-24 NN denotes activation
T13880 25-31 NN denotes assays
T13881 32-35 IN denotes For
T13882 36-46 NN denotes activation
T13883 47-49 IN denotes of
T13884 50-54 NNP denotes CD40
T13885 55-64 VBG denotes signaling
T13886 64-65 , denotes ,
T13887 66-67 CD denotes 5
T13888 67-68 NN denotes ×
T13889 68-71 CD denotes 104
T13890 72-75 CD denotes HI5
T13891 76-82 NN denotes insect
T13892 83-88 NNS denotes cells
T13893 89-91 CC denotes or
T13894 92-95 CD denotes HI5
T13895 96-102 JJ denotes insect
T13896 103-108 NNS denotes cells
T13897 109-119 VBG denotes expressing
T13898 120-125 NN denotes mouse
T13899 126-131 NNP denotes CD154
T13900 132-133 -LRB- denotes (
T13901 133-137 NNP denotes CD40
T13902 138-144 NN denotes ligand
T13903 144-145 -RRB- denotes )
T13904 146-150 VBD denotes were
T13905 151-156 VBN denotes added
T13906 157-159 TO denotes to
T13907 160-161 CD denotes 1
T13908 161-162 CD denotes ×
T13909 162-165 CD denotes 106
T13910 166-167 NNP denotes B
T13911 168-173 NNS denotes cells
T13912 173-174 . denotes .
T13913 175-180 NNS denotes Cells
T13914 181-185 VBD denotes were
T13915 186-197 VBN denotes centrifuged
T13916 198-201 IN denotes for
T13917 202-203 CD denotes 1
T13918 204-210 NN denotes minute
T13919 211-213 IN denotes at
T13920 214-217 CD denotes 400
T13921 218-219 SYM denotes x
T13922 220-221 FW denotes g
T13923 222-223 -LRB- denotes (
T13924 223-225 TO denotes to
T13925 226-233 VB denotes promote
T13926 234-241 NN denotes contact
T13927 242-249 IN denotes between
T13928 250-256 JJ denotes ligand
T13929 257-262 NNS denotes cells
T13930 263-266 CC denotes and
T13931 267-268 NNP denotes B
T13932 269-274 NNS denotes cells
T13933 274-275 -RRB- denotes )
T13934 276-280 RB denotes then
T13935 281-290 VBD denotes incubated
T13936 291-293 IN denotes at
T13937 294-296 CD denotes 37
T13938 296-297 CD denotes °
T13939 297-298 NNP denotes C
T13940 299-302 IN denotes for
T13941 303-308 NNS denotes times
T13942 309-318 VBD denotes indicated
T13943 319-321 IN denotes in
T13944 322-326 NNP denotes Fig.
T13945 327-328 CD denotes 4
T13946 328-329 . denotes .
T13947 330-339 VBG denotes Following
T13948 340-351 NN denotes stimulation
T13949 351-352 , denotes ,
T13950 353-358 NNS denotes cells
T13951 359-363 VBD denotes were
T13952 364-371 VBN denotes chilled
T13953 372-374 IN denotes on
T13954 375-378 NN denotes ice
T13955 379-382 IN denotes for
T13956 383-384 CD denotes 2
T13957 385-392 NNS denotes minutes
T13958 392-393 . denotes .
T13959 394-398 NN denotes Cell
T13960 399-406 NNS denotes pellets
T13961 407-411 VBD denotes were
T13962 412-421 VBN denotes dissolved
T13963 422-424 IN denotes in
T13964 425-427 NNP denotes 2X
T13965 428-436 NNP denotes SDS-PAGE
T13966 437-444 VBG denotes loading
T13967 445-451 NN denotes buffer
T13968 451-452 , denotes ,
T13969 453-462 VBN denotes sonicated
T13970 462-463 , denotes ,
T13971 464-467 CC denotes and
T13972 468-474 VBN denotes heated
T13973 475-478 IN denotes for
T13974 479-480 CD denotes 5
T13975 481-488 NNS denotes minutes
T13976 489-491 IN denotes at
T13977 492-494 CD denotes 95
T13978 494-495 CD denotes °
T13979 495-497 NNP denotes C.
T13980 498-503 NNP denotes Total
T13981 504-508 NN denotes cell
T13982 509-516 VBZ denotes lysates
T13983 517-518 -LRB- denotes (
T13984 518-519 CD denotes 1
T13985 519-520 CD denotes ×
T13986 520-523 CD denotes 105
T13987 524-528 NN denotes cell
T13988 529-540 NNS denotes equivalents
T13989 541-544 IN denotes per
T13990 545-549 NN denotes lane
T13991 549-550 -RRB- denotes )
T13992 551-555 VBD denotes were
T13993 556-568 VBN denotes fractionated
T13994 569-571 IN denotes by
T13995 572-580 NNP denotes SDS-PAGE
T13996 581-584 CC denotes and
T13997 585-592 VBD denotes blotted
T13998 593-595 TO denotes to
T13999 596-610 VB denotes polyvinylidine
T14000 611-619 NN denotes fluoride
T14001 620-621 -LRB- denotes (
T14002 621-625 NNP denotes PVDF
T14003 625-626 -RRB- denotes )
T14004 627-636 NNS denotes membranes
T14005 636-637 . denotes .
T14006 638-647 NNS denotes Membranes
T14007 648-652 VBD denotes were
T14008 653-659 VBN denotes probed
T14009 660-664 IN denotes with
T14010 665-675 NNS denotes antibodies
T14011 676-678 IN denotes as
T14012 679-688 VBN denotes indicated
T14013 689-691 IN denotes in
T14014 692-696 NNP denotes Fig.
T14015 697-698 CD denotes 4
T14016 698-699 . denotes .
T14017 700-716 JJ denotes Chemiluminescent
T14018 717-726 NN denotes detection
T14019 727-728 -LRB- denotes (
T14020 728-734 NNP denotes Pierce
T14021 735-748 NNP denotes Biotechnology
T14022 748-749 -RRB- denotes )
T14023 750-753 VBD denotes was
T14024 754-758 VBN denotes used
T14025 759-762 IN denotes for
T14026 763-766 DT denotes the
T14027 767-780 NN denotes visualization
T14028 781-783 IN denotes of
T14029 784-789 NNS denotes bands
T14030 790-792 IN denotes on
T14031 793-800 JJ denotes Western
T14032 801-806 NNS denotes blots
T14033 806-807 . denotes .
T14034 808-814 NNS denotes Images
T14035 815-817 IN denotes of
T14036 818-823 NNS denotes blots
T14037 824-828 VBD denotes were
T14038 829-837 VBN denotes recorded
T14039 838-842 IN denotes with
T14040 843-844 DT denotes a
T14041 845-854 JJ denotes low-light
T14042 855-862 NN denotes imaging
T14043 863-869 NN denotes system
T14044 870-871 -LRB- denotes (
T14045 871-878 CD denotes LAS4000
T14046 878-879 , denotes ,
T14047 880-884 NNP denotes Fuji
T14048 885-892 NNP denotes Medical
T14049 893-900 NNPS denotes Systems
T14050 900-901 -RRB- denotes )
T14051 902-905 CC denotes and
T14052 906-908 IN denotes on
T14053 909-914 NN denotes X-ray
T14054 915-919 NN denotes film
T14055 919-920 . denotes .
R10900 T13876 T13880 nmod NF-κB,assays
R10901 T13877 T13876 cc and,NF-κB
R10902 T13878 T13876 conj JNK,NF-κB
R10903 T13879 T13880 compound activation,assays
R10904 T13880 T13905 nsubjpass assays,added
R10905 T13881 T13880 prep For,assays
R10906 T13882 T13881 pobj activation,For
R10907 T13883 T13882 prep of,activation
R10908 T13884 T13883 pobj CD40,of
R10909 T13885 T13881 pobj signaling,For
R10910 T13886 T13885 punct ",",signaling
R10911 T13887 T13888 nummod 5,×
R10912 T13888 T13892 dep ×,cells
R10913 T13889 T13892 nummod 104,cells
R10914 T13890 T13892 nummod HI5,cells
R10915 T13891 T13892 compound insect,cells
R10916 T13892 T13880 appos cells,assays
R10917 T13893 T13892 cc or,cells
R10918 T13894 T13896 nummod HI5,cells
R10919 T13895 T13896 compound insect,cells
R10920 T13896 T13892 conj cells,cells
R10921 T13897 T13896 acl expressing,cells
R10922 T13898 T13899 compound mouse,CD154
R10923 T13899 T13897 dobj CD154,expressing
R10924 T13900 T13899 punct (,CD154
R10925 T13901 T13902 compound CD40,ligand
R10926 T13902 T13899 appos ligand,CD154
R10927 T13903 T13899 punct ),CD154
R10928 T13904 T13905 auxpass were,added
R10929 T13905 T13905 ROOT added,added
R10930 T13906 T13905 prep to,added
R10931 T13907 T13911 nummod 1,cells
R10932 T13908 T13911 nummod ×,cells
R10933 T13909 T13911 nummod 106,cells
R10934 T13910 T13911 compound B,cells
R10935 T13911 T13906 pobj cells,to
R10936 T13912 T13905 punct .,added
R10937 T13913 T13915 nsubjpass Cells,centrifuged
R10938 T13914 T13915 auxpass were,centrifuged
R10939 T13915 T13915 ROOT centrifuged,centrifuged
R10940 T13916 T13915 prep for,centrifuged
R10941 T13917 T13918 nummod 1,minute
R10942 T13918 T13916 pobj minute,for
R10943 T13919 T13915 prep at,centrifuged
R10944 T13920 T13922 nummod 400,g
R10945 T13921 T13922 punct x,g
R10946 T13922 T13919 pobj g,at
R10947 T13923 T13922 punct (,g
R10948 T13924 T13925 aux to,promote
R10949 T13925 T13922 acl promote,g
R10950 T13926 T13925 dobj contact,promote
R10951 T13927 T13926 prep between,contact
R10952 T13928 T13929 amod ligand,cells
R10953 T13929 T13927 pobj cells,between
R10954 T13930 T13929 cc and,cells
R10955 T13931 T13932 compound B,cells
R10956 T13932 T13929 conj cells,cells
R10957 T13933 T13925 punct ),promote
R10958 T13934 T13935 advmod then,incubated
R10959 T13935 T13922 dep incubated,g
R10960 T13936 T13935 prep at,incubated
R10961 T13937 T13938 nummod 37,°
R10962 T13938 T13939 nummod °,C
R10963 T13939 T13936 pobj C,at
R10964 T13940 T13935 prep for,incubated
R10965 T13941 T13940 pobj times,for
R10966 T13942 T13935 conj indicated,incubated
R10967 T13943 T13942 prep in,indicated
R10968 T13944 T13943 pobj Fig.,in
R10969 T13945 T13944 nummod 4,Fig.
R10970 T13946 T13915 punct .,centrifuged
R10971 T13947 T13952 prep Following,chilled
R10972 T13948 T13947 pobj stimulation,Following
R10973 T13949 T13952 punct ",",chilled
R10974 T13950 T13952 nsubjpass cells,chilled
R10975 T13951 T13952 auxpass were,chilled
R10976 T13952 T13952 ROOT chilled,chilled
R10977 T13953 T13952 prep on,chilled
R10978 T13954 T13953 pobj ice,on
R10979 T13955 T13952 prep for,chilled
R10980 T13956 T13957 nummod 2,minutes
R10981 T13957 T13955 pobj minutes,for
R10982 T13958 T13952 punct .,chilled
R10983 T13959 T13960 compound Cell,pellets
R10984 T13960 T13962 nsubjpass pellets,dissolved
R10985 T13961 T13962 auxpass were,dissolved
R10986 T13962 T13962 ROOT dissolved,dissolved
R10987 T13963 T13962 prep in,dissolved
R10988 T13964 T13965 compound 2X,SDS-PAGE
R10989 T13965 T13967 compound SDS-PAGE,buffer
R10990 T13966 T13967 compound loading,buffer
R10991 T13967 T13963 pobj buffer,in
R10992 T13968 T13962 punct ",",dissolved
R10993 T13969 T13962 advcl sonicated,dissolved
R10994 T13970 T13969 punct ",",sonicated
R10995 T13971 T13969 cc and,sonicated
R10996 T13972 T13969 conj heated,sonicated
R10997 T13973 T13972 prep for,heated
R10998 T13974 T13975 nummod 5,minutes
R10999 T13975 T13973 pobj minutes,for
R11000 T13976 T13975 prep at,minutes
R11001 T13977 T13978 nummod 95,°
R11002 T13978 T13982 nummod °,lysates
R11003 T13979 T13980 compound C.,Total
R11004 T13980 T13981 compound Total,cell
R11005 T13981 T13982 compound cell,lysates
R11006 T13982 T13976 pobj lysates,at
R11007 T13983 T13982 punct (,lysates
R11008 T13984 T13988 nummod 1,equivalents
R11009 T13985 T13988 nummod ×,equivalents
R11010 T13986 T13988 nummod 105,equivalents
R11011 T13987 T13988 compound cell,equivalents
R11012 T13988 T13982 appos equivalents,lysates
R11013 T13989 T13988 prep per,equivalents
R11014 T13990 T13989 pobj lane,per
R11015 T13991 T13962 punct ),dissolved
R11016 T13992 T13993 auxpass were,fractionated
R11017 T13993 T13993 ROOT fractionated,fractionated
R11018 T13994 T13993 agent by,fractionated
R11019 T13995 T13994 pobj SDS-PAGE,by
R11020 T13996 T13993 cc and,fractionated
R11021 T13997 T13993 conj blotted,fractionated
R11022 T13998 T13997 prep to,blotted
R11023 T13999 T14000 compound polyvinylidine,fluoride
R11024 T14000 T13998 pobj fluoride,to
R11025 T14001 T14000 punct (,fluoride
R11026 T14002 T14000 appos PVDF,fluoride
R11027 T14003 T14000 punct ),fluoride
R11028 T14004 T13993 nsubjpass membranes,fractionated
R11029 T14005 T13993 punct .,fractionated
R11030 T14006 T14008 nsubjpass Membranes,probed
R11031 T14007 T14008 auxpass were,probed
R11032 T14008 T14008 ROOT probed,probed
R11033 T14009 T14008 prep with,probed
R11034 T14010 T14009 pobj antibodies,with
R11035 T14011 T14012 mark as,indicated
R11036 T14012 T14008 advcl indicated,probed
R11037 T14013 T14012 prep in,indicated
R11038 T14014 T14013 pobj Fig.,in
R11039 T14015 T14014 nummod 4,Fig.
R11040 T14016 T14008 punct .,probed
R11041 T14017 T14018 amod Chemiluminescent,detection
R11042 T14018 T14018 ROOT detection,detection
R11043 T14019 T14024 punct (,used
R11044 T14020 T14021 compound Pierce,Biotechnology
R11045 T14021 T14024 nsubjpass Biotechnology,used
R11046 T14022 T14021 punct ),Biotechnology
R11047 T14023 T14024 auxpass was,used
R11048 T14024 T14024 ROOT used,used
R11049 T14025 T14024 prep for,used
R11050 T14026 T14027 det the,visualization
R11051 T14027 T14025 pobj visualization,for
R11052 T14028 T14027 prep of,visualization
R11053 T14029 T14028 pobj bands,of
R11054 T14030 T14029 prep on,bands
R11055 T14031 T14032 amod Western,blots
R11056 T14032 T14030 pobj blots,on
R11057 T14033 T14024 punct .,used
R11058 T14034 T14038 nsubjpass Images,recorded
R11059 T14035 T14034 prep of,Images
R11060 T14036 T14035 pobj blots,of
R11061 T14037 T14038 auxpass were,recorded
R11062 T14038 T14038 ROOT recorded,recorded
R11063 T14039 T14038 prep with,recorded
R11064 T14040 T14043 det a,system
R11065 T14041 T14043 amod low-light,system
R11066 T14042 T14043 compound imaging,system
R11067 T14043 T14039 pobj system,with
R11068 T14044 T14043 punct (,system
R11069 T14045 T14043 appos LAS4000,system
R11070 T14046 T14043 punct ",",system
R11071 T14047 T14049 compound Fuji,Systems
R11072 T14048 T14049 compound Medical,Systems
R11073 T14049 T14043 appos Systems,system
R11074 T14050 T14043 punct ),system
R11075 T14051 T14039 cc and,with
R11076 T14052 T14039 conj on,with
R11077 T14053 T14054 compound X-ray,film
R11078 T14054 T14052 pobj film,on
R11079 T14055 T14038 punct .,recorded

GO-BP

Id Subject Object Predicate Lexical cue
T14231 10-13 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T14232 55-64 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-MF

Id Subject Object Predicate Lexical cue
T14233 10-13 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T14234 138-144 http://purl.obolibrary.org/obo/GO_0005488 denotes ligand
T14235 250-256 http://purl.obolibrary.org/obo/GO_0005488 denotes ligand
T14236 665-675 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T14242 353-358 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14243 394-398 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T14244 504-508 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T14245 524-528 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T14246 627-636 http://purl.obolibrary.org/obo/GO_0016020 denotes membranes
T14247 638-647 http://purl.obolibrary.org/obo/GO_0016020 denotes Membranes
T14248 665-675 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T14249 665-675 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T14237 83-88 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14238 103-108 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14239 168-173 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14240 257-262 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14241 269-274 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T13868 0-31 Sentence denotes NF-κB and JNK activation assays
T13869 32-174 Sentence denotes For activation of CD40 signaling, 5×104 HI5 insect cells or HI5 insect cells expressing mouse CD154 (CD40 ligand) were added to 1×106 B cells.
T13870 175-329 Sentence denotes Cells were centrifuged for 1 minute at 400 x g (to promote contact between ligand cells and B cells) then incubated at 37°C for times indicated in Fig. 4.
T13871 330-393 Sentence denotes Following stimulation, cells were chilled on ice for 2 minutes.
T13872 394-637 Sentence denotes Cell pellets were dissolved in 2X SDS-PAGE loading buffer, sonicated, and heated for 5 minutes at 95°C. Total cell lysates (1×105 cell equivalents per lane) were fractionated by SDS-PAGE and blotted to polyvinylidine fluoride (PVDF) membranes.
T13873 638-699 Sentence denotes Membranes were probed with antibodies as indicated in Fig. 4.
T13874 700-807 Sentence denotes Chemiluminescent detection (Pierce Biotechnology) was used for the visualization of bands on Western blots.
T13875 808-920 Sentence denotes Images of blots were recorded with a low-light imaging system (LAS4000, Fuji Medical Systems) and on X-ray film.
T222 0-31 Sentence denotes NF-κB and JNK activation assays
T223 32-174 Sentence denotes For activation of CD40 signaling, 5×104 HI5 insect cells or HI5 insect cells expressing mouse CD154 (CD40 ligand) were added to 1×106 B cells.
T224 175-329 Sentence denotes Cells were centrifuged for 1 minute at 400 x g (to promote contact between ligand cells and B cells) then incubated at 37°C for times indicated in Fig. 4.
T225 330-393 Sentence denotes Following stimulation, cells were chilled on ice for 2 minutes.
T226 394-497 Sentence denotes Cell pellets were dissolved in 2X SDS-PAGE loading buffer, sonicated, and heated for 5 minutes at 95°C.
T227 498-637 Sentence denotes Total cell lysates (1×105 cell equivalents per lane) were fractionated by SDS-PAGE and blotted to polyvinylidine fluoride (PVDF) membranes.
T228 638-699 Sentence denotes Membranes were probed with antibodies as indicated in Fig. 4.
T229 700-807 Sentence denotes Chemiluminescent detection (Pierce Biotechnology) was used for the visualization of bands on Western blots.
T230 808-920 Sentence denotes Images of blots were recorded with a low-light imaging system (LAS4000, Fuji Medical Systems) and on X-ray film.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14219 50-54 P25942 denotes CD40
T14220 126-131 P29965 denotes CD154
T14221 133-137 P25942 denotes CD40
T14222 133-144 P29965 denotes CD40 ligand

test2

Id Subject Object Predicate Lexical cue
T13860 50-54 Protein denotes CD40
T13861 109-119 Gene_expression denotes expressing
T13862 126-131 Protein denotes CD154
T13863 133-144 Protein denotes CD40 ligand
R10896 T13862 T13861 themeOf CD154,expressing
R10897 T13863 T13862 equivalentTo CD40 ligand,CD154