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PMC:3148254 / 2460-2711
Annnotations
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T1121","span":{"begin":24,"end":28},"obj":"Protein"},{"id":"T1122","span":{"begin":99,"end":117},"obj":"Entity"},{"id":"T1123","span":{"begin":121,"end":125},"obj":"Protein"},{"id":"T1124","span":{"begin":225,"end":236},"obj":"Binding"}],"relations":[{"id":"R778","pred":"themeOf","subj":"T1122","obj":"T1124"},{"id":"R779","pred":"partOf","subj":"T1122","obj":"T1123"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":" The mechanism by which CD40 induces these signaling pathways has not been completely defined. The cytoplasmic domain of CD40 does not appear to have intrinsic enzymatic activity, but is able to mediate signaling through the recruitment of several int"}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T2572","span":{"begin":24,"end":28},"obj":"Protein"},{"id":"T2573","span":{"begin":121,"end":125},"obj":"Protein"}],"text":" The mechanism by which CD40 induces these signaling pathways has not been completely defined. The cytoplasmic domain of CD40 does not appear to have intrinsic enzymatic activity, but is able to mediate signaling through the recruitment of several int"}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T2650","span":{"begin":24,"end":28},"obj":"Protein"},{"id":"T2651","span":{"begin":99,"end":117},"obj":"Entity"},{"id":"T2652","span":{"begin":121,"end":125},"obj":"Protein"},{"id":"T2653","span":{"begin":225,"end":236},"obj":"Binding"}],"relations":[{"id":"R2015","pred":"themeOf","subj":"T2651","obj":"T2653"},{"id":"R2016","pred":"partOf","subj":"T2651","obj":"T2652"}],"text":" The mechanism by which CD40 induces these signaling pathways has not been completely defined. The cytoplasmic domain of CD40 does not appear to have intrinsic enzymatic activity, but is able to mediate signaling through the recruitment of several int"}
pmc-enju-pas
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The mechanism by which CD40 induces these signaling pathways has not been completely defined. The cytoplasmic domain of CD40 does not appear to have intrinsic enzymatic activity, but is able to mediate signaling through the recruitment of several int"}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1301","span":{"begin":1,"end":4},"obj":"DT"},{"id":"T1302","span":{"begin":5,"end":14},"obj":"NN"},{"id":"T1303","span":{"begin":15,"end":17},"obj":"IN"},{"id":"T1304","span":{"begin":18,"end":23},"obj":"WDT"},{"id":"T1305","span":{"begin":24,"end":28},"obj":"NNP"},{"id":"T1306","span":{"begin":29,"end":36},"obj":"VBZ"},{"id":"T1307","span":{"begin":37,"end":42},"obj":"DT"},{"id":"T1308","span":{"begin":43,"end":52},"obj":"VBG"},{"id":"T1309","span":{"begin":53,"end":61},"obj":"NNS"},{"id":"T1310","span":{"begin":62,"end":65},"obj":"VBZ"},{"id":"T1311","span":{"begin":66,"end":69},"obj":"RB"},{"id":"T1312","span":{"begin":70,"end":74},"obj":"VBN"},{"id":"T1313","span":{"begin":75,"end":85},"obj":"RB"},{"id":"T1314","span":{"begin":86,"end":93},"obj":"VBN"},{"id":"T1315","span":{"begin":93,"end":94},"obj":"."},{"id":"T1316","span":{"begin":95,"end":98},"obj":"DT"},{"id":"T1317","span":{"begin":99,"end":110},"obj":"JJ"},{"id":"T1318","span":{"begin":111,"end":117},"obj":"NN"},{"id":"T1319","span":{"begin":118,"end":120},"obj":"IN"},{"id":"T1320","span":{"begin":121,"end":125},"obj":"NNP"},{"id":"T1321","span":{"begin":126,"end":130},"obj":"VBZ"},{"id":"T1322","span":{"begin":131,"end":134},"obj":"RB"},{"id":"T1323","span":{"begin":135,"end":141},"obj":"VB"},{"id":"T1324","span":{"begin":142,"end":144},"obj":"TO"},{"id":"T1325","span":{"begin":145,"end":149},"obj":"VB"},{"id":"T1326","span":{"begin":150,"end":159},"obj":"JJ"},{"id":"T1327","span":{"begin":160,"end":169},"obj":"JJ"},{"id":"T1328","span":{"begin":170,"end":178},"obj":"NN"},{"id":"T1329","span":{"begin":178,"end":179},"obj":","},{"id":"T1330","span":{"begin":180,"end":183},"obj":"CC"},{"id":"T1331","span":{"begin":184,"end":186},"obj":"VBZ"},{"id":"T1332","span":{"begin":187,"end":191},"obj":"JJ"},{"id":"T1333","span":{"begin":192,"end":194},"obj":"TO"},{"id":"T1334","span":{"begin":195,"end":202},"obj":"VB"},{"id":"T1335","span":{"begin":203,"end":212},"obj":"VBG"},{"id":"T1336","span":{"begin":213,"end":220},"obj":"IN"},{"id":"T1337","span":{"begin":221,"end":224},"obj":"DT"},{"id":"T1338","span":{"begin":225,"end":236},"obj":"NN"},{"id":"T1339","span":{"begin":237,"end":239},"obj":"IN"},{"id":"T1340","span":{"begin":240,"end":247},"obj":"JJ"}],"relations":[{"id":"R919","pred":"det","subj":"T1301","obj":"T1302"},{"id":"R920","pred":"nsubjpass","subj":"T1302","obj":"T1314"},{"id":"R921","pred":"prep","subj":"T1303","obj":"T1306"},{"id":"R922","pred":"pobj","subj":"T1304","obj":"T1303"},{"id":"R923","pred":"nsubj","subj":"T1305","obj":"T1306"},{"id":"R924","pred":"relcl","subj":"T1306","obj":"T1302"},{"id":"R925","pred":"det","subj":"T1307","obj":"T1309"},{"id":"R926","pred":"amod","subj":"T1308","obj":"T1309"},{"id":"R927","pred":"dobj","subj":"T1309","obj":"T1306"},{"id":"R928","pred":"aux","subj":"T1310","obj":"T1314"},{"id":"R929","pred":"neg","subj":"T1311","obj":"T1314"},{"id":"R930","pred":"auxpass","subj":"T1312","obj":"T1314"},{"id":"R931","pred":"advmod","subj":"T1313","obj":"T1314"},{"id":"R932","pred":"ROOT","subj":"T1314","obj":"T1314"},{"id":"R933","pred":"punct","subj":"T1315","obj":"T1314"},{"id":"R934","pred":"det","subj":"T1316","obj":"T1318"},{"id":"R935","pred":"amod","subj":"T1317","obj":"T1318"},{"id":"R936","pred":"nsubj","subj":"T1318","obj":"T1323"},{"id":"R937","pred":"prep","subj":"T1319","obj":"T1318"},{"id":"R938","pred":"pobj","subj":"T1320","obj":"T1319"},{"id":"R939","pred":"aux","subj":"T1321","obj":"T1323"},{"id":"R940","pred":"neg","subj":"T1322","obj":"T1323"},{"id":"R941","pred":"ROOT","subj":"T1323","obj":"T1323"},{"id":"R942","pred":"aux","subj":"T1324","obj":"T1325"},{"id":"R943","pred":"xcomp","subj":"T1325","obj":"T1323"},{"id":"R944","pred":"amod","subj":"T1326","obj":"T1328"},{"id":"R945","pred":"amod","subj":"T1327","obj":"T1328"},{"id":"R946","pred":"dobj","subj":"T1328","obj":"T1325"},{"id":"R947","pred":"punct","subj":"T1329","obj":"T1323"},{"id":"R948","pred":"cc","subj":"T1330","obj":"T1323"},{"id":"R949","pred":"conj","subj":"T1331","obj":"T1323"},{"id":"R950","pred":"acomp","subj":"T1332","obj":"T1331"},{"id":"R951","pred":"aux","subj":"T1333","obj":"T1334"},{"id":"R952","pred":"xcomp","subj":"T1334","obj":"T1332"},{"id":"R953","pred":"dobj","subj":"T1335","obj":"T1334"},{"id":"R954","pred":"prep","subj":"T1336","obj":"T1335"},{"id":"R955","pred":"det","subj":"T1337","obj":"T1338"},{"id":"R956","pred":"pobj","subj":"T1338","obj":"T1336"},{"id":"R957","pred":"prep","subj":"T1339","obj":"T1338"}],"text":" The mechanism by which CD40 induces these signaling pathways has not been completely defined. The cytoplasmic domain of CD40 does not appear to have intrinsic enzymatic activity, but is able to mediate signaling through the recruitment of several int"}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T2315","span":{"begin":43,"end":52},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T2316","span":{"begin":203,"end":212},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T2341","span":{"begin":43,"end":61},"obj":"http://purl.obolibrary.org/obo/GO_0007165"}],"text":" The mechanism by which CD40 induces these signaling pathways has not been completely defined. The cytoplasmic domain of CD40 does not appear to have intrinsic enzymatic activity, but is able to mediate signaling through the recruitment of several int"}
sentences
{"project":"sentences","denotations":[{"id":"T1185","span":{"begin":1,"end":94},"obj":"Sentence"},{"id":"T20","span":{"begin":1,"end":94},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":" The mechanism by which CD40 induces these signaling pathways has not been completely defined. The cytoplasmic domain of CD40 does not appear to have intrinsic enzymatic activity, but is able to mediate signaling through the recruitment of several int"}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T2252","span":{"begin":24,"end":28},"obj":"P25942"},{"id":"T2253","span":{"begin":121,"end":125},"obj":"P25942"},{"id":"T2254","span":{"begin":187,"end":191},"obj":"P00519"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":" The mechanism by which CD40 induces these signaling pathways has not been completely defined. The cytoplasmic domain of CD40 does not appear to have intrinsic enzymatic activity, but is able to mediate signaling through the recruitment of several int"}
test2
{"project":"test2","denotations":[{"id":"T1056","span":{"begin":24,"end":28},"obj":"Protein"},{"id":"T1057","span":{"begin":99,"end":117},"obj":"Entity"},{"id":"T1058","span":{"begin":121,"end":125},"obj":"Protein"},{"id":"T1059","span":{"begin":225,"end":236},"obj":"Binding"}],"relations":[{"id":"R746","pred":"partOf","subj":"T1057","obj":"T1058"},{"id":"R747","pred":"themeOf","subj":"T1058","obj":"T1059"}],"text":" The mechanism by which CD40 induces these signaling pathways has not been completely defined. The cytoplasmic domain of CD40 does not appear to have intrinsic enzymatic activity, but is able to mediate signaling through the recruitment of several int"}