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PMC:3148254 / 1560-1816 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T114 53-57 Protein denotes HOIP
T115 58-67 Negative_regulation denotes deficient
T116 130-141 Positive_regulation denotes Restoration
T117 145-149 Protein denotes HOIP
T118 150-160 Gene_expression denotes expression
T119 241-245 Protein denotes HOIP
R54 T114 T115 themeOf HOIP,deficient
R55 T117 T118 themeOf HOIP,expression
R56 T118 T116 themeOf expression,Restoration

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T934 10-14 Protein denotes CD40
T935 112-117 Protein denotes NF-κB
T937 118-128 Positive_regulation denotes activation
T938 145-149 Protein denotes HOIP
T939 150-160 Gene_expression denotes expression
R678 T935 T937 themeOf NF-κB,activation
R679 T938 T939 themeOf HOIP,expression

events-check-again

Id Subject Object Predicate Lexical cue
T974 53-57 Protein denotes HOIP
T975 58-67 Negative_regulation denotes deficient
T976 130-141 Positive_regulation denotes Restoration
T977 145-149 Protein denotes HOIP
T978 150-160 Gene_expression denotes expression
T979 241-245 Protein denotes HOIP
R696 T974 T975 themeOf HOIP,deficient
R697 T977 T978 themeOf HOIP,expression
R698 T978 T976 themeOf expression,Restoration

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T659 3-5 TO denotes to
T660 6-9 DT denotes the
T661 10-14 NN denotes CD40
T662 15-24 NN denotes signaling
T663 25-32 NN denotes complex
T664 33-36 VB denotes was
T665 37-49 JJ denotes undetectable
T666 50-52 IN denotes in
T667 53-67 JJ denotes HOIP-deficient
T668 68-73 NN denotes cells
T669 73-74 -COMMA- denotes ,
T670 75-86 RB denotes potentially
T671 87-97 VB denotes explaining
T672 98-101 DT denotes the
T674 109-111 IN denotes in
T675 112-117 NN denotes NF-κB
T676 118-128 NN denotes activation
T677 130-141 NN denotes Restoration
T678 142-144 IN denotes of
T679 145-149 NN denotes HOIP
T680 150-160 NN denotes expression
T681 161-169 VB denotes reversed
T682 170-173 DT denotes the
T683 174-181 NN denotes defects
T684 182-184 IN denotes in
T685 185-193 JJ denotes cellular
T686 194-204 NN denotes activation
T687 205-208 CC denotes and
T688 209-218 NN denotes signaling
T689 220-225 DT denotes These
T690 226-233 NN denotes results
T691 234-240 VB denotes reveal
T692 241-245 NN denotes HOIP
T693 246-248 IN denotes as
T694 249-250 DT denotes a
T695 251-254 JJ denotes key
T673 102-108 NN denotes defect
R579 T663 T659 arg2Of complex,to
R580 T663 T660 arg1Of complex,the
R581 T663 T661 arg1Of complex,CD40
R582 T663 T662 arg1Of complex,signaling
R583 T664 T666 arg1Of was,in
R584 T664 T669 arg1Of was,","
R585 T665 T664 arg2Of undetectable,was
R586 T668 T666 arg2Of cells,in
R587 T668 T667 arg1Of cells,HOIP-deficient
R588 T671 T664 arg3Of explaining,was
R589 T671 T670 arg1Of explaining,potentially
R590 T676 T674 arg2Of activation,in
R591 T676 T675 arg1Of activation,NF-κB
R592 T677 T678 arg1Of Restoration,of
R593 T677 T681 arg1Of Restoration,reversed
R594 T680 T678 arg2Of expression,of
R595 T680 T679 arg1Of expression,HOIP
R596 T683 T681 arg2Of defects,reversed
R597 T683 T682 arg1Of defects,the
R598 T683 T684 arg1Of defects,in
R599 T686 T687 arg1Of activation,and
R600 T687 T684 arg2Of and,in
R601 T687 T685 arg1Of and,cellular
R602 T688 T687 arg2Of signaling,and
R603 T690 T689 arg1Of results,These
R604 T690 T691 arg1Of results,reveal
R605 T691 T693 arg1Of reveal,as
R606 T692 T691 arg2Of HOIP,reveal
R699 T673 T671 arg2Of defect,explaining
R700 T673 T672 arg1Of defect,the
R701 T673 T674 arg1Of defect,in

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T379 3-5 TO denotes to
T380 6-9 DT denotes the
T381 10-14 NNP denotes CD40
T382 15-24 VBG denotes signaling
T383 25-32 NN denotes complex
T384 33-36 VBD denotes was
T385 37-49 JJ denotes undetectable
T386 50-52 IN denotes in
T387 53-67 JJ denotes HOIP-deficient
T388 68-73 NNS denotes cells
T389 73-74 , denotes ,
T390 75-86 RB denotes potentially
T391 87-97 VBG denotes explaining
T392 98-101 DT denotes the
T393 102-108 NN denotes defect
T394 109-111 IN denotes in
T395 112-117 JJ denotes NF-κB
T396 118-128 NN denotes activation
T397 128-129 . denotes .
T398 130-141 NNP denotes Restoration
T399 142-144 IN denotes of
T400 145-149 NNP denotes HOIP
T401 150-160 NN denotes expression
T402 161-169 VBD denotes reversed
T403 170-173 DT denotes the
T404 174-181 NNS denotes defects
T405 182-184 IN denotes in
T406 185-193 JJ denotes cellular
T407 194-204 NN denotes activation
T408 205-208 CC denotes and
T409 209-218 VBG denotes signaling
T410 218-219 . denotes .
T411 220-225 DT denotes These
T412 226-233 NNS denotes results
T413 234-240 VBP denotes reveal
T414 241-245 NNP denotes HOIP
T415 246-248 IN denotes as
T416 249-250 DT denotes a
T417 251-254 JJ denotes key
R302 T380 T381 det the,CD40
R303 T381 T379 pobj CD40,to
R304 T382 T383 compound signaling,complex
R305 T383 T384 nsubj complex,was
R306 T384 T384 ROOT was,was
R307 T385 T384 acomp undetectable,was
R308 T386 T385 prep in,undetectable
R309 T387 T388 amod HOIP-deficient,cells
R310 T388 T386 pobj cells,in
R311 T389 T384 punct ",",was
R312 T390 T391 advmod potentially,explaining
R313 T391 T384 advcl explaining,was
R314 T392 T393 det the,defect
R315 T393 T391 dobj defect,explaining
R316 T394 T393 prep in,defect
R317 T395 T396 amod NF-κB,activation
R318 T396 T394 pobj activation,in
R319 T397 T384 punct .,was
R320 T398 T402 nsubj Restoration,reversed
R321 T399 T398 prep of,Restoration
R322 T400 T401 compound HOIP,expression
R323 T401 T399 pobj expression,of
R324 T402 T402 ROOT reversed,reversed
R325 T403 T404 det the,defects
R326 T404 T402 dobj defects,reversed
R327 T405 T404 prep in,defects
R328 T406 T407 amod cellular,activation
R329 T407 T405 pobj activation,in
R330 T408 T407 cc and,activation
R331 T409 T407 conj signaling,activation
R332 T410 T402 punct .,reversed
R333 T411 T412 det These,results
R334 T412 T413 nsubj results,reveal
R335 T413 T413 ROOT reveal,reveal
R336 T414 T413 dobj HOIP,reveal
R337 T415 T413 prep as,reveal

GO-BP

Id Subject Object Predicate Lexical cue
T763 15-24 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T764 209-218 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T781 112-128 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation
T793 185-193 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular

GO-CC

Id Subject Object Predicate Lexical cue
T805 68-73 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T133 130-219 Sentence denotes Restoration of HOIP expression reversed the defects in cellular activation and signaling.
T14 130-219 Sentence denotes Restoration of HOIP expression reversed the defects in cellular activation and signaling.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T735 10-14 P25942 denotes CD40
T736 53-57 Q96EP0 denotes HOIP
T737 145-149 Q96EP0 denotes HOIP
T738 241-245 Q96EP0 denotes HOIP

test2

Id Subject Object Predicate Lexical cue
T75 53-57 Protein denotes HOIP
T76 58-67 Negative_regulation denotes deficient
T77 145-149 Protein denotes HOIP
T78 150-160 Gene_expression denotes expression
T79 241-245 Protein denotes HOIP
R36 T75 T76 themeOf HOIP,deficient
R37 T77 T78 themeOf HOIP,expression