PMC:3148254 / 13396-13553
Annnotations
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6250 | 23-26 | Protein | denotes | IKK |
T6251 | 43-46 | Protein | denotes | IκB |
T6252 | 101-106 | Protein | denotes | NF-κB |
T6253 | 0-15 | Phosphorylation | denotes | Phosphorylation |
T6254 | 35-42 | Regulation | denotes | targets |
T6255 | 79-90 | Protein_catabolism | denotes | degradation |
T6256 | 120-127 | Entity | denotes | nucleus |
T6257 | 35-42 | Regulation | denotes | targets |
R4800 | T6250 | T6253 | themeOf | IKK,Phosphorylation |
R4801 | T6251 | T6254 | themeOf | IκB,targets |
R4802 | T6251 | T6255 | themeOf | IκB,degradation |
R4803 | T6253 | T6254 | causeOf | Phosphorylation,targets |
R4804 | T6253 | T6257 | causeOf | Phosphorylation,targets |
R4805 | T6255 | T6257 | themeOf | degradation,targets |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5943 | 0-15 | NN | denotes | Phosphorylation |
T5944 | 16-18 | IN | denotes | by |
T5945 | 19-22 | DT | denotes | the |
T5946 | 23-26 | NN | denotes | IKK |
T5947 | 27-34 | NN | denotes | complex |
T5948 | 35-42 | VB | denotes | targets |
T5949 | 43-46 | NN | denotes | IκB |
T5950 | 47-55 | NN | denotes | proteins |
T5951 | 56-59 | IN | denotes | for |
T5952 | 60-74 | NN | denotes | ubiquitination |
T5953 | 75-78 | CC | denotes | and |
T5954 | 79-90 | NN | denotes | degradation |
T5955 | 90-91 | -COMMA- | denotes | , |
T5956 | 92-100 | VB | denotes | allowing |
T5957 | 101-106 | NN | denotes | NF-κB |
T5958 | 107-109 | TO | denotes | to |
T5959 | 110-115 | VB | denotes | enter |
T5960 | 116-119 | DT | denotes | the |
T5961 | 120-127 | NN | denotes | nucleus |
T5962 | 128-131 | CC | denotes | and |
T5963 | 132-140 | VB | denotes | activate |
T5964 | 141-145 | NN | denotes | gene |
T5965 | 146-156 | NN | denotes | expression |
T7483 | 27-34 | NN | denotes | complex |
R4636 | T5943 | T5944 | arg1Of | Phosphorylation,by |
R4637 | T5943 | T5948 | arg1Of | Phosphorylation,targets |
R4638 | T5947 | T5944 | arg2Of | complex,by |
R4639 | T5947 | T5945 | arg1Of | complex,the |
R4640 | T5947 | T5946 | arg1Of | complex,IKK |
R4641 | T5948 | T5955 | arg1Of | targets,"," |
R4642 | T5948 | T5956 | modOf | targets,allowing |
R4643 | T5950 | T5948 | arg2Of | proteins,targets |
R4644 | T5950 | T5949 | arg1Of | proteins,IκB |
R4645 | T5950 | T5951 | arg1Of | proteins,for |
R4646 | T5952 | T5953 | arg1Of | ubiquitination,and |
R4647 | T5953 | T5951 | arg2Of | and,for |
R4648 | T5954 | T5953 | arg2Of | degradation,and |
R4649 | T5957 | T5956 | arg2Of | NF-κB,allowing |
R4650 | T5957 | T5959 | arg1Of | NF-κB,enter |
R4651 | T5957 | T5963 | arg1Of | NF-κB,activate |
R4652 | T5959 | T5962 | arg1Of | enter,and |
R4653 | T5961 | T5959 | arg2Of | nucleus,enter |
R4654 | T5961 | T5960 | arg1Of | nucleus,the |
R4655 | T5962 | T5956 | arg3Of | and,allowing |
R4656 | T5962 | T5958 | arg1Of | and,to |
R4657 | T5963 | T5962 | arg2Of | activate,and |
R4658 | T5965 | T5963 | arg2Of | expression,activate |
R4659 | T5965 | T5964 | arg1Of | expression,gene |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5670 | 0-15 | NN | denotes | Phosphorylation |
T5671 | 16-18 | IN | denotes | by |
T5672 | 19-22 | DT | denotes | the |
T5673 | 23-26 | NNP | denotes | IKK |
T5674 | 27-34 | JJ | denotes | complex |
T5675 | 35-42 | NNS | denotes | targets |
T5676 | 43-46 | VBP | denotes | IκB |
T5677 | 47-55 | NNS | denotes | proteins |
T5678 | 56-59 | IN | denotes | for |
T5679 | 60-74 | NN | denotes | ubiquitination |
T5680 | 75-78 | CC | denotes | and |
T5681 | 79-90 | NN | denotes | degradation |
T5682 | 90-91 | , | denotes | , |
T5683 | 92-100 | VBG | denotes | allowing |
T5684 | 101-106 | NN | denotes | NF-κB |
T5685 | 107-109 | TO | denotes | to |
T5686 | 110-115 | VB | denotes | enter |
T5687 | 116-119 | DT | denotes | the |
T5688 | 120-127 | NN | denotes | nucleus |
T5689 | 128-131 | CC | denotes | and |
T5690 | 132-140 | VB | denotes | activate |
T5691 | 141-145 | NN | denotes | gene |
T5692 | 146-156 | NN | denotes | expression |
T5693 | 156-157 | . | denotes | . |
T6738 | 27-34 | NN | denotes | complex |
R4364 | T5670 | T5670 | ROOT | Phosphorylation,Phosphorylation |
R4365 | T5671 | T5670 | prep | by,Phosphorylation |
R4366 | T5672 | T5675 | det | the,targets |
R4367 | T5673 | T5675 | nmod | IKK,targets |
R4368 | T5674 | T5675 | amod | complex,targets |
R4369 | T5675 | T5671 | pobj | targets,by |
R4370 | T5676 | T5677 | amod | IκB,proteins |
R4371 | T5677 | T5670 | conj | proteins,Phosphorylation |
R4372 | T5678 | T5677 | prep | for,proteins |
R4373 | T5679 | T5678 | pobj | ubiquitination,for |
R4374 | T5680 | T5679 | cc | and,ubiquitination |
R4375 | T5681 | T5679 | conj | degradation,ubiquitination |
R4376 | T5682 | T5677 | punct | ",",proteins |
R4377 | T5683 | T5670 | acl | allowing,Phosphorylation |
R4378 | T5684 | T5686 | nsubj | NF-κB,enter |
R4379 | T5685 | T5686 | aux | to,enter |
R4380 | T5686 | T5683 | ccomp | enter,allowing |
R4381 | T5687 | T5688 | det | the,nucleus |
R4382 | T5688 | T5686 | dobj | nucleus,enter |
R4383 | T5689 | T5686 | cc | and,enter |
R4384 | T5690 | T5686 | conj | activate,enter |
R4385 | T5691 | T5692 | compound | gene,expression |
R4386 | T5692 | T5690 | dobj | expression,activate |
R4387 | T5693 | T5670 | punct | .,Phosphorylation |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6113 | 23-26 | http://purl.obolibrary.org/obo/GO_0008384 | denotes | IKK |
T6115 | 47-74 | http://purl.obolibrary.org/obo/GO_0016567 | denotes | proteins for ubiquitination |
T6116 | 79-90 | http://purl.obolibrary.org/obo/GO_0009056 | denotes | degradation |
T6118 | 141-156 | http://purl.obolibrary.org/obo/GO_0010467 | denotes | gene expression |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6132 | 23-26 | http://purl.obolibrary.org/obo/GO_0008384 | denotes | IKK |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6147 | 23-34 | http://purl.obolibrary.org/obo/GO_0008385 | denotes | IKK complex |
T6149 | 120-127 | http://purl.obolibrary.org/obo/GO_0005634 | denotes | nucleus |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5503 | 0-157 | Sentence | denotes | Phosphorylation by the IKK complex targets IκB proteins for ubiquitination and degradation, allowing NF-κB to enter the nucleus and activate gene expression. |
T93 | 0-157 | Sentence | denotes | Phosphorylation by the IKK complex targets IκB proteins for ubiquitination and degradation, allowing NF-κB to enter the nucleus and activate gene expression. |
test2
Id | Subject | Object | Predicate | Lexical cue | Negation |
---|---|---|---|---|---|
T5436 | 0-15 | Phosphorylation | denotes | Phosphorylation | |
T5437 | 79-90 | Protein_catabolism | denotes | degradation | true |
T5438 | 92-100 | Positive_regulation | denotes | allowing | |
T5439 | 120-127 | Entity | denotes | nucleus | |
R4171 | T5436 | T5438 | causeOf | Phosphorylation,allowing |