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PMC:3148254 / 13396-13553 JSONTXT

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bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T6250 23-26 Protein denotes IKK
T6251 43-46 Protein denotes IκB
T6252 101-106 Protein denotes NF-κB
T6253 0-15 Phosphorylation denotes Phosphorylation
T6254 35-42 Regulation denotes targets
T6255 79-90 Protein_catabolism denotes degradation
T6256 120-127 Entity denotes nucleus
T6257 35-42 Regulation denotes targets
R4800 T6250 T6253 themeOf IKK,Phosphorylation
R4801 T6251 T6254 themeOf IκB,targets
R4802 T6251 T6255 themeOf IκB,degradation
R4803 T6253 T6254 causeOf Phosphorylation,targets
R4804 T6253 T6257 causeOf Phosphorylation,targets
R4805 T6255 T6257 themeOf degradation,targets

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5943 0-15 NN denotes Phosphorylation
T5944 16-18 IN denotes by
T5945 19-22 DT denotes the
T5946 23-26 NN denotes IKK
T5947 27-34 NN denotes complex
T5948 35-42 VB denotes targets
T5949 43-46 NN denotes IκB
T5950 47-55 NN denotes proteins
T5951 56-59 IN denotes for
T5952 60-74 NN denotes ubiquitination
T5953 75-78 CC denotes and
T5954 79-90 NN denotes degradation
T5955 90-91 -COMMA- denotes ,
T5956 92-100 VB denotes allowing
T5957 101-106 NN denotes NF-κB
T5958 107-109 TO denotes to
T5959 110-115 VB denotes enter
T5960 116-119 DT denotes the
T5961 120-127 NN denotes nucleus
T5962 128-131 CC denotes and
T5963 132-140 VB denotes activate
T5964 141-145 NN denotes gene
T5965 146-156 NN denotes expression
T7483 27-34 NN denotes complex
R4636 T5943 T5944 arg1Of Phosphorylation,by
R4637 T5943 T5948 arg1Of Phosphorylation,targets
R4638 T5947 T5944 arg2Of complex,by
R4639 T5947 T5945 arg1Of complex,the
R4640 T5947 T5946 arg1Of complex,IKK
R4641 T5948 T5955 arg1Of targets,","
R4642 T5948 T5956 modOf targets,allowing
R4643 T5950 T5948 arg2Of proteins,targets
R4644 T5950 T5949 arg1Of proteins,IκB
R4645 T5950 T5951 arg1Of proteins,for
R4646 T5952 T5953 arg1Of ubiquitination,and
R4647 T5953 T5951 arg2Of and,for
R4648 T5954 T5953 arg2Of degradation,and
R4649 T5957 T5956 arg2Of NF-κB,allowing
R4650 T5957 T5959 arg1Of NF-κB,enter
R4651 T5957 T5963 arg1Of NF-κB,activate
R4652 T5959 T5962 arg1Of enter,and
R4653 T5961 T5959 arg2Of nucleus,enter
R4654 T5961 T5960 arg1Of nucleus,the
R4655 T5962 T5956 arg3Of and,allowing
R4656 T5962 T5958 arg1Of and,to
R4657 T5963 T5962 arg2Of activate,and
R4658 T5965 T5963 arg2Of expression,activate
R4659 T5965 T5964 arg1Of expression,gene

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5670 0-15 NN denotes Phosphorylation
T5671 16-18 IN denotes by
T5672 19-22 DT denotes the
T5673 23-26 NNP denotes IKK
T5674 27-34 JJ denotes complex
T5675 35-42 NNS denotes targets
T5676 43-46 VBP denotes IκB
T5677 47-55 NNS denotes proteins
T5678 56-59 IN denotes for
T5679 60-74 NN denotes ubiquitination
T5680 75-78 CC denotes and
T5681 79-90 NN denotes degradation
T5682 90-91 , denotes ,
T5683 92-100 VBG denotes allowing
T5684 101-106 NN denotes NF-κB
T5685 107-109 TO denotes to
T5686 110-115 VB denotes enter
T5687 116-119 DT denotes the
T5688 120-127 NN denotes nucleus
T5689 128-131 CC denotes and
T5690 132-140 VB denotes activate
T5691 141-145 NN denotes gene
T5692 146-156 NN denotes expression
T5693 156-157 . denotes .
T6738 27-34 NN denotes complex
R4364 T5670 T5670 ROOT Phosphorylation,Phosphorylation
R4365 T5671 T5670 prep by,Phosphorylation
R4366 T5672 T5675 det the,targets
R4367 T5673 T5675 nmod IKK,targets
R4368 T5674 T5675 amod complex,targets
R4369 T5675 T5671 pobj targets,by
R4370 T5676 T5677 amod IκB,proteins
R4371 T5677 T5670 conj proteins,Phosphorylation
R4372 T5678 T5677 prep for,proteins
R4373 T5679 T5678 pobj ubiquitination,for
R4374 T5680 T5679 cc and,ubiquitination
R4375 T5681 T5679 conj degradation,ubiquitination
R4376 T5682 T5677 punct ",",proteins
R4377 T5683 T5670 acl allowing,Phosphorylation
R4378 T5684 T5686 nsubj NF-κB,enter
R4379 T5685 T5686 aux to,enter
R4380 T5686 T5683 ccomp enter,allowing
R4381 T5687 T5688 det the,nucleus
R4382 T5688 T5686 dobj nucleus,enter
R4383 T5689 T5686 cc and,enter
R4384 T5690 T5686 conj activate,enter
R4385 T5691 T5692 compound gene,expression
R4386 T5692 T5690 dobj expression,activate
R4387 T5693 T5670 punct .,Phosphorylation

GO-BP

Id Subject Object Predicate Lexical cue
T6113 23-26 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK
T6115 47-74 http://purl.obolibrary.org/obo/GO_0016567 denotes proteins for ubiquitination
T6116 79-90 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T6118 141-156 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

GO-MF

Id Subject Object Predicate Lexical cue
T6132 23-26 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK

GO-CC

Id Subject Object Predicate Lexical cue
T6147 23-34 http://purl.obolibrary.org/obo/GO_0008385 denotes IKK complex
T6149 120-127 http://purl.obolibrary.org/obo/GO_0005634 denotes nucleus

sentences

Id Subject Object Predicate Lexical cue
T5503 0-157 Sentence denotes Phosphorylation by the IKK complex targets IκB proteins for ubiquitination and degradation, allowing NF-κB to enter the nucleus and activate gene expression.
T93 0-157 Sentence denotes Phosphorylation by the IKK complex targets IκB proteins for ubiquitination and degradation, allowing NF-κB to enter the nucleus and activate gene expression.

test2

Id Subject Object Predicate Lexical cue Negation
T5436 0-15 Phosphorylation denotes Phosphorylation
T5437 79-90 Protein_catabolism denotes degradation true
T5438 92-100 Positive_regulation denotes allowing
T5439 120-127 Entity denotes nucleus
R4171 T5436 T5438 causeOf Phosphorylation,allowing