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PMC:3148254 / 11623-12486 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T15715 44-47 Protein denotes GLε
T15716 48-61 Transcription denotes transcription
T15717 65-74 Negative_regulation denotes defective
T15718 78-82 Protein denotes CD40
T15719 94-98 Protein denotes HOIP
T15720 99-108 Negative_regulation denotes deficient
T15721 127-131 Protein denotes HOIP
T15722 132-141 Negative_regulation denotes deficient
T15723 210-214 Protein denotes HOIP
T15724 244-248 Protein denotes HOIP
T15725 249-258 Negative_regulation denotes deficient
T15726 283-287 Protein denotes HOIP
T15727 309-313 Protein denotes HOIP
T15728 319-323 Protein denotes HOIP
T15729 428-432 Protein denotes IL-4
T15730 550-553 Protein denotes GLε
T15731 554-565 Transcription denotes transcripts true
T15732 608-613 Protein denotes Hprt1
T15733 614-625 Transcription denotes transcripts
T15734 840-844 Protein denotes HOIP
T15735 845-854 Negative_regulation denotes deficient
R12421 T15715 T15716 themeOf GLε,transcription
R12422 T15716 T15717 themeOf transcription,defective
R12423 T15719 T15720 themeOf HOIP,deficient
R12424 T15721 T15722 themeOf HOIP,deficient
R12425 T15724 T15725 themeOf HOIP,deficient
R12426 T15730 T15731 themeOf GLε,transcripts
R12427 T15732 T15733 themeOf Hprt1,transcripts
R12428 T15734 T15735 themeOf HOIP,deficient

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T16092 78-82 Protein denotes CD40
T16093 369-373 Protein denotes CD40
T16094 380-404 Protein denotes isotype control antibody
T16095 406-409 Protein denotes iso
T16096 428-432 Protein denotes IL-4
T16097 550-565 Protein denotes GLε transcripts
T16098 608-625 Protein denotes Hprt1 transcripts

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T16099 44-47 Protein denotes GLε
T16100 48-61 Transcription denotes transcription
T16101 65-74 Negative_regulation denotes defective
T16102 78-82 Protein denotes CD40
T16103 94-98 Protein denotes HOIP
T16104 99-108 Negative_regulation denotes deficient
T16105 127-131 Protein denotes HOIP
T16106 132-141 Negative_regulation denotes deficient
T16107 210-214 Protein denotes HOIP
T16108 244-248 Protein denotes HOIP
T16109 249-258 Negative_regulation denotes deficient
T16110 283-287 Protein denotes HOIP
T16111 309-313 Protein denotes HOIP
T16112 319-323 Protein denotes HOIP
T16113 428-432 Protein denotes IL-4
T16114 550-553 Protein denotes GLε
T16115 554-565 Transcription denotes transcripts true
T16116 608-613 Protein denotes Hprt1
T16117 614-625 Transcription denotes transcripts
T16118 840-844 Protein denotes HOIP
T16119 845-854 Negative_regulation denotes deficient
R12727 T16099 T16100 themeOf GLε,transcription
R12728 T16100 T16101 themeOf transcription,defective
R12729 T16103 T16104 themeOf HOIP,deficient
R12730 T16105 T16106 themeOf HOIP,deficient
R12731 T16108 T16109 themeOf HOIP,deficient
R12732 T16114 T16115 themeOf GLε,transcripts
R12733 T16116 T16117 themeOf Hprt1,transcripts
R12734 T16118 T16119 themeOf HOIP,deficient

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15889 44-47 NN denotes GLε
T15890 48-61 NN denotes transcription
T15891 62-64 VB denotes is
T15892 65-74 JJ denotes defective
T15893 75-77 IN denotes in
T15894 78-93 JJ denotes CD40-stimulated
T15895 94-108 JJ denotes HOIP-deficient
T15896 109-114 NN denotes cells
T15897 116-122 NN denotes A20.2J
T15898 123-126 CC denotes and
T15899 127-141 JJ denotes HOIP-deficient
T15900 142-147 NN denotes cells
T15901 148-158 VB denotes transduced
T15902 159-163 IN denotes with
T15903 164-166 DT denotes an
T15904 167-172 JJ denotes empty
T15905 173-183 JJ denotes retroviral
T15906 184-190 NN denotes vector
T15907 191-192 -LRB- denotes (
T15908 192-198 NN denotes A20.2J
T15909 199-200 SYM denotes +
T15910 201-205 NN denotes pMIP
T15911 206-209 CC denotes and
T15912 210-217 JJ denotes HOIP-/-
T15913 218-219 SYM denotes +
T15914 220-224 NN denotes pMIP
T15915 224-225 -COMMA- denotes ,
T15916 226-238 RB denotes respectively
T15917 238-239 -RRB- denotes )
T15918 239-240 -COMMA- denotes ,
T15919 241-243 CC denotes or
T15920 244-258 JJ denotes HOIP-deficient
T15921 259-264 NN denotes cells
T15922 265-275 VB denotes transduced
T15923 276-280 IN denotes with
T15924 281-282 DT denotes a
T15925 283-296 JJ denotes HOIP-encoding
T15926 297-307 NN denotes retrovirus
T15927 308-309 -LRB- denotes (
T15928 309-316 JJ denotes HOIP-/-
T15929 317-318 SYM denotes +
T15930 319-323 NN denotes HOIP
T15931 323-324 -RRB- denotes )
T15932 325-329 VB denotes were
T15933 330-338 VB denotes cultured
T15934 339-348 RB denotes overnight
T15935 349-353 IN denotes with
T15936 354-363 JJ denotes agonistic
T15937 364-373 NN denotes anti-CD40
T15938 374-376 CC denotes or
T15939 377-379 DT denotes an
T15940 380-387 NN denotes isotype
T15941 388-395 NN denotes control
T15942 396-404 NN denotes antibody
T15943 405-406 -LRB- denotes (
T15944 406-409 NN denotes iso
T15945 409-410 -RRB- denotes )
T15946 410-411 -COMMA- denotes ,
T15947 412-416 IN denotes with
T15948 417-419 CC denotes or
T15949 420-427 IN denotes without
T15950 428-432 NN denotes IL-4
T15951 434-437 NN denotes RNA
T15952 438-441 VB denotes was
T15953 442-450 VB denotes isolated
T15954 451-455 IN denotes from
T15955 456-459 DT denotes the
T15956 460-465 NN denotes cells
T15957 465-466 -COMMA- denotes ,
T15958 467-486 JJ denotes reverse-transcribed
T15959 486-487 -COMMA- denotes ,
T15960 488-491 CC denotes and
T15961 492-496 RB denotes then
T15962 497-506 VB denotes subjected
T15963 507-509 TO denotes to
T15964 510-522 JJ denotes quantitative
T15965 523-526 NN denotes PCR
T15966 527-529 TO denotes to
T15967 530-539 VB denotes determine
T15968 540-546 NN denotes levels
T15969 547-549 IN denotes of
T15970 550-553 NN denotes GLε
T15971 554-565 NN denotes transcripts
T15972 567-574 NN denotes Results
T15973 575-579 VB denotes were
T15974 580-590 VB denotes normalized
T15975 591-593 TO denotes to
T15976 594-597 DT denotes the
T15977 598-604 NN denotes levels
T15978 605-607 IN denotes of
T15979 608-613 NN denotes Hprt1
T15980 614-625 NN denotes transcripts
T15981 626-628 IN denotes in
T15982 629-633 DT denotes each
T15983 634-640 NN denotes sample
T15984 642-649 NN denotes Symbols
T15985 650-658 VB denotes indicate
T15986 659-662 DT denotes the
T15987 663-669 NN denotes values
T15988 670-674 IN denotes from
T15989 675-684 NN denotes duplicate
T15990 685-693 NN denotes cultures
T15991 694-695 -LRB- denotes (
T15992 695-696 DT denotes a
T15993 697-701 NN denotes line
T15994 702-711 VB denotes indicates
T15995 712-715 DT denotes the
T15996 716-720 NN denotes mean
T15997 721-723 IN denotes of
T15998 724-727 DT denotes the
T15999 728-731 CD denotes two
T16000 732-738 NN denotes values
T16001 738-739 -RRB- denotes )
T16002 741-748 JJ denotes Similar
T16003 749-756 NN denotes results
T16004 757-761 VB denotes were
T16005 762-770 VB denotes obtained
T16006 771-773 IN denotes in
T16007 774-775 DT denotes a
T16008 776-782 JJ denotes second
T16009 783-793 NN denotes experiment
T16010 794-797 CC denotes and
T16011 798-800 IN denotes in
T16012 801-803 DT denotes an
T16013 804-814 JJ denotes additional
T16014 815-825 NN denotes experiment
T16015 826-830 IN denotes with
T16016 831-832 DT denotes a
T16017 833-839 JJ denotes second
T16018 840-854 JJ denotes HOIP-deficient
T16019 855-860 NN denotes clone
R12576 T15890 T15889 arg1Of transcription,GLε
R12577 T15890 T15891 arg1Of transcription,is
R12578 T15890 T15892 arg1Of transcription,defective
R12579 T15892 T15891 arg2Of defective,is
R12580 T15892 T15893 arg1Of defective,in
R12581 T15896 T15893 arg2Of cells,in
R12582 T15896 T15894 arg1Of cells,CD40-stimulated
R12583 T15896 T15895 arg1Of cells,HOIP-deficient
R12584 T15900 T15897 arg1Of cells,A20.2J
R12585 T15900 T15898 arg1Of cells,and
R12586 T15900 T15899 arg1Of cells,HOIP-deficient
R12587 T15900 T15901 arg2Of cells,transduced
R12588 T15900 T15907 arg1Of cells,(
R12589 T15900 T15919 arg1Of cells,or
R12590 T15901 T15902 arg1Of transduced,with
R12591 T15906 T15902 arg2Of vector,with
R12592 T15906 T15903 arg1Of vector,an
R12593 T15906 T15904 arg1Of vector,empty
R12594 T15906 T15905 arg1Of vector,retroviral
R12595 T15910 T15908 arg1Of pMIP,A20.2J
R12596 T15910 T15909 arg1Of pMIP,+
R12597 T15910 T15911 arg1Of pMIP,and
R12598 T15912 T15911 arg2Of HOIP-/-,and
R12599 T15914 T15907 arg2Of pMIP,(
R12600 T15914 T15910 arg1Of pMIP,pMIP
R12601 T15914 T15912 arg1Of pMIP,HOIP-/-
R12602 T15914 T15913 arg1Of pMIP,+
R12603 T15914 T15915 arg1Of pMIP,","
R12604 T15914 T15916 arg1Of pMIP,respectively
R12605 T15917 T15907 arg3Of ),(
R12606 T15919 T15918 arg1Of or,","
R12607 T15919 T15932 arg1Of or,were
R12608 T15919 T15933 arg2Of or,cultured
R12609 T15921 T15919 arg2Of cells,or
R12610 T15921 T15920 arg1Of cells,HOIP-deficient
R12611 T15921 T15922 arg2Of cells,transduced
R12612 T15922 T15923 arg1Of transduced,with
R12613 T15926 T15923 arg2Of retrovirus,with
R12614 T15926 T15924 arg1Of retrovirus,a
R12615 T15926 T15925 arg1Of retrovirus,HOIP-encoding
R12616 T15926 T15927 arg1Of retrovirus,(
R12617 T15930 T15927 arg2Of HOIP,(
R12618 T15930 T15928 arg1Of HOIP,HOIP-/-
R12619 T15930 T15929 arg1Of HOIP,+
R12620 T15931 T15927 arg3Of ),(
R12621 T15933 T15932 arg2Of cultured,were
R12622 T15933 T15934 arg1Of cultured,overnight
R12623 T15933 T15935 arg1Of cultured,with
R12624 T15933 T15946 arg1Of cultured,","
R12625 T15933 T15947 arg1Of cultured,with
R12626 T15933 T15949 arg1Of cultured,without
R12627 T15937 T15936 arg1Of anti-CD40,agonistic
R12628 T15937 T15938 arg1Of anti-CD40,or
R12629 T15938 T15935 arg2Of or,with
R12630 T15942 T15938 arg2Of antibody,or
R12631 T15942 T15939 arg1Of antibody,an
R12632 T15942 T15940 arg1Of antibody,isotype
R12633 T15942 T15941 arg1Of antibody,control
R12634 T15942 T15943 arg1Of antibody,(
R12635 T15944 T15943 arg2Of iso,(
R12636 T15945 T15943 arg3Of ),(
R12637 T15947 T15948 arg1Of with,or
R12638 T15949 T15948 arg2Of without,or
R12639 T15950 T15947 arg2Of IL-4,with
R12640 T15950 T15949 arg2Of IL-4,without
R12641 T15951 T15952 arg1Of RNA,was
R12642 T15951 T15953 arg2Of RNA,isolated
R12643 T15951 T15962 arg2Of RNA,subjected
R12644 T15953 T15954 arg1Of isolated,from
R12645 T15953 T15960 arg1Of isolated,and
R12646 T15956 T15954 arg2Of cells,from
R12647 T15956 T15955 arg1Of cells,the
R12648 T15956 T15957 arg1Of cells,","
R12649 T15958 T15957 arg2Of reverse-transcribed,","
R12650 T15960 T15952 arg2Of and,was
R12651 T15960 T15959 arg1Of and,","
R12652 T15962 T15960 arg2Of subjected,and
R12653 T15962 T15961 arg1Of subjected,then
R12654 T15962 T15963 arg1Of subjected,to
R12655 T15962 T15966 modOf subjected,to
R12656 T15965 T15963 arg2Of PCR,to
R12657 T15965 T15964 arg1Of PCR,quantitative
R12658 T15967 T15966 arg1Of determine,to
R12659 T15968 T15967 arg2Of levels,determine
R12660 T15968 T15969 arg1Of levels,of
R12661 T15971 T15969 arg2Of transcripts,of
R12662 T15971 T15970 arg1Of transcripts,GLε
R12663 T15972 T15973 arg1Of Results,were
R12664 T15972 T15974 arg2Of Results,normalized
R12665 T15974 T15973 arg2Of normalized,were
R12666 T15974 T15975 arg1Of normalized,to
R12667 T15977 T15975 arg2Of levels,to
R12668 T15977 T15976 arg1Of levels,the
R12669 T15977 T15978 arg1Of levels,of
R12670 T15977 T15981 arg1Of levels,in
R12671 T15980 T15978 arg2Of transcripts,of
R12672 T15980 T15979 arg1Of transcripts,Hprt1
R12673 T15983 T15981 arg2Of sample,in
R12674 T15983 T15982 arg1Of sample,each
R12675 T15984 T15985 arg1Of Symbols,indicate
R12676 T15985 T15991 arg1Of indicate,(
R12677 T15987 T15985 arg2Of values,indicate
R12678 T15987 T15986 arg1Of values,the
R12679 T15987 T15988 arg1Of values,from
R12680 T15990 T15988 arg2Of cultures,from
R12681 T15990 T15989 arg1Of cultures,duplicate
R12682 T15993 T15992 arg1Of line,a
R12683 T15993 T15994 arg1Of line,indicates
R12684 T15994 T15991 arg2Of indicates,(
R12685 T15996 T15994 arg2Of mean,indicates
R12686 T15996 T15995 arg1Of mean,the
R12687 T15996 T15997 arg1Of mean,of
R12688 T16000 T15997 arg2Of values,of
R12689 T16000 T15998 arg1Of values,the
R12690 T16000 T15999 arg1Of values,two
R12691 T16001 T15991 arg3Of ),(
R12692 T16003 T16002 arg1Of results,Similar
R12693 T16003 T16004 arg1Of results,were
R12694 T16003 T16005 arg2Of results,obtained
R12695 T16005 T16004 arg2Of obtained,were
R12696 T16005 T16006 arg1Of obtained,in
R12697 T16005 T16011 arg1Of obtained,in
R12698 T16005 T16015 arg1Of obtained,with
R12699 T16006 T16010 arg1Of in,and
R12700 T16009 T16006 arg2Of experiment,in
R12701 T16009 T16007 arg1Of experiment,a
R12702 T16009 T16008 arg1Of experiment,second
R12703 T16011 T16010 arg2Of in,and
R12704 T16014 T16011 arg2Of experiment,in
R12705 T16014 T16012 arg1Of experiment,an
R12706 T16014 T16013 arg1Of experiment,additional
R12707 T16019 T16015 arg2Of clone,with
R12708 T16019 T16016 arg1Of clone,a
R12709 T16019 T16017 arg1Of clone,second
R12710 T16019 T16018 arg1Of clone,HOIP-deficient

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15742 44-47 NNP denotes GLε
T15743 48-61 NN denotes transcription
T15744 62-64 VBZ denotes is
T15745 65-74 JJ denotes defective
T15746 75-77 IN denotes in
T15747 78-93 JJ denotes CD40-stimulated
T15748 94-108 JJ denotes HOIP-deficient
T15749 109-114 NNS denotes cells
T15750 114-115 . denotes .
T15751 116-119 CD denotes A20
T15752 119-121 CD denotes .2
T15753 121-122 NNP denotes J
T15754 123-126 CC denotes and
T15755 127-141 JJ denotes HOIP-deficient
T15756 142-147 NNS denotes cells
T15757 148-158 VBN denotes transduced
T15758 159-163 IN denotes with
T15759 164-166 DT denotes an
T15760 167-172 JJ denotes empty
T15761 173-183 NN denotes retroviral
T15762 184-190 NN denotes vector
T15763 191-192 -LRB- denotes (
T15764 192-195 CD denotes A20
T15765 195-197 CD denotes .2
T15766 197-198 NNP denotes J
T15767 199-200 CD denotes +
T15768 201-205 NNP denotes pMIP
T15769 206-209 CC denotes and
T15770 210-214 NNP denotes HOIP
T15771 214-215 : denotes -
T15772 215-216 SYM denotes /
T15773 216-217 : denotes -
T15774 218-219 NN denotes +
T15775 220-224 NNP denotes pMIP
T15776 224-225 , denotes ,
T15777 226-238 RB denotes respectively
T15778 238-239 -RRB- denotes )
T15779 239-240 , denotes ,
T15780 241-243 CC denotes or
T15781 244-258 JJ denotes HOIP-deficient
T15782 259-264 NNS denotes cells
T15783 265-275 VBN denotes transduced
T15784 276-280 IN denotes with
T15785 281-282 DT denotes a
T15786 283-296 JJ denotes HOIP-encoding
T15787 297-307 NN denotes retrovirus
T15788 308-309 -LRB- denotes (
T15789 309-313 SYM denotes HOIP
T15790 313-314 : denotes -
T15791 314-315 SYM denotes /
T15792 315-316 : denotes -
T15793 317-318 NN denotes +
T15794 319-323 NNP denotes HOIP
T15795 323-324 -RRB- denotes )
T15796 325-329 VBD denotes were
T15797 330-338 VBN denotes cultured
T15798 339-348 JJ denotes overnight
T15799 349-353 IN denotes with
T15800 354-363 JJ denotes agonistic
T15801 364-373 JJ denotes anti-CD40
T15802 374-376 CC denotes or
T15803 377-379 DT denotes an
T15804 380-387 NN denotes isotype
T15805 388-395 NN denotes control
T15806 396-404 NN denotes antibody
T15807 405-406 -LRB- denotes (
T15808 406-409 FW denotes iso
T15809 409-410 -RRB- denotes )
T15810 410-411 , denotes ,
T15811 412-416 IN denotes with
T15812 417-419 CC denotes or
T15813 420-427 IN denotes without
T15814 428-432 NN denotes IL-4
T15815 432-433 . denotes .
T15816 434-437 NNP denotes RNA
T15817 438-441 VBD denotes was
T15818 442-450 VBN denotes isolated
T15819 451-455 IN denotes from
T15820 456-459 DT denotes the
T15821 460-465 NNS denotes cells
T15822 465-466 , denotes ,
T15823 467-486 JJ denotes reverse-transcribed
T15824 486-487 , denotes ,
T15825 488-491 CC denotes and
T15826 492-496 RB denotes then
T15827 497-506 VBN denotes subjected
T15828 507-509 TO denotes to
T15829 510-522 JJ denotes quantitative
T15830 523-526 NNP denotes PCR
T15831 527-529 TO denotes to
T15832 530-539 VB denotes determine
T15833 540-546 NNS denotes levels
T15834 547-549 IN denotes of
T15835 550-553 NNP denotes GLε
T15836 554-565 NNS denotes transcripts
T15837 565-566 . denotes .
T15838 567-574 NNS denotes Results
T15839 575-579 VBD denotes were
T15840 580-590 VBN denotes normalized
T15841 591-593 TO denotes to
T15842 594-597 DT denotes the
T15843 598-604 NNS denotes levels
T15844 605-607 IN denotes of
T15845 608-613 JJ denotes Hprt1
T15846 614-625 NNS denotes transcripts
T15847 626-628 IN denotes in
T15848 629-633 DT denotes each
T15849 634-640 NN denotes sample
T15850 640-641 . denotes .
T15851 642-649 NNS denotes Symbols
T15852 650-658 VBP denotes indicate
T15853 659-662 DT denotes the
T15854 663-669 NNS denotes values
T15855 670-674 IN denotes from
T15856 675-684 VBP denotes duplicate
T15857 685-693 NNS denotes cultures
T15858 694-695 -LRB- denotes (
T15859 695-696 DT denotes a
T15860 697-701 NN denotes line
T15861 702-711 VBZ denotes indicates
T15862 712-715 DT denotes the
T15863 716-720 NN denotes mean
T15864 721-723 IN denotes of
T15865 724-727 DT denotes the
T15866 728-731 CD denotes two
T15867 732-738 NNS denotes values
T15868 738-739 -RRB- denotes )
T15869 739-740 . denotes .
T15870 741-748 JJ denotes Similar
T15871 749-756 NNS denotes results
T15872 757-761 VBD denotes were
T15873 762-770 VBN denotes obtained
T15874 771-773 IN denotes in
T15875 774-775 DT denotes a
T15876 776-782 JJ denotes second
T15877 783-793 NN denotes experiment
T15878 794-797 CC denotes and
T15879 798-800 IN denotes in
T15880 801-803 DT denotes an
T15881 804-814 JJ denotes additional
T15882 815-825 NN denotes experiment
T15883 826-830 IN denotes with
T15884 831-832 DT denotes a
T15885 833-839 JJ denotes second
T15886 840-854 JJ denotes HOIP-deficient
T15887 855-860 NN denotes clone
T15888 860-861 . denotes .
R12429 T15742 T15743 compound GLε,transcription
R12430 T15743 T15744 nsubj transcription,is
R12431 T15744 T15744 ROOT is,is
R12432 T15745 T15744 acomp defective,is
R12433 T15746 T15745 prep in,defective
R12434 T15747 T15749 amod CD40-stimulated,cells
R12435 T15748 T15749 amod HOIP-deficient,cells
R12436 T15749 T15746 pobj cells,in
R12437 T15750 T15744 punct .,is
R12438 T15751 T15753 nummod A20,J
R12439 T15752 T15753 nummod .2,J
R12440 T15753 T15756 nmod J,cells
R12441 T15754 T15753 cc and,J
R12442 T15755 T15753 conj HOIP-deficient,J
R12443 T15756 T15756 ROOT cells,cells
R12444 T15757 T15756 acl transduced,cells
R12445 T15758 T15757 prep with,transduced
R12446 T15759 T15762 det an,vector
R12447 T15760 T15762 amod empty,vector
R12448 T15761 T15762 compound retroviral,vector
R12449 T15762 T15758 pobj vector,with
R12450 T15763 T15762 punct (,vector
R12451 T15764 T15768 nummod A20,pMIP
R12452 T15765 T15768 nummod .2,pMIP
R12453 T15766 T15768 nmod J,pMIP
R12454 T15767 T15768 nummod +,pMIP
R12455 T15768 T15762 appos pMIP,vector
R12456 T15769 T15768 cc and,pMIP
R12457 T15770 T15768 conj HOIP,pMIP
R12458 T15771 T15762 punct -,vector
R12459 T15772 T15762 punct /,vector
R12460 T15773 T15762 punct -,vector
R12461 T15774 T15775 compound +,pMIP
R12462 T15775 T15762 appos pMIP,vector
R12463 T15776 T15775 punct ",",pMIP
R12464 T15777 T15775 advmod respectively,pMIP
R12465 T15778 T15775 punct ),pMIP
R12466 T15779 T15775 punct ",",pMIP
R12467 T15780 T15775 cc or,pMIP
R12468 T15781 T15782 amod HOIP-deficient,cells
R12469 T15782 T15775 conj cells,pMIP
R12470 T15783 T15762 acl transduced,vector
R12471 T15784 T15783 prep with,transduced
R12472 T15785 T15787 det a,retrovirus
R12473 T15786 T15787 amod HOIP-encoding,retrovirus
R12474 T15787 T15784 pobj retrovirus,with
R12475 T15788 T15797 punct (,cultured
R12476 T15789 T15793 punct HOIP,+
R12477 T15790 T15793 punct -,+
R12478 T15791 T15793 punct /,+
R12479 T15792 T15793 punct -,+
R12480 T15793 T15797 nsubjpass +,cultured
R12481 T15794 T15793 npadvmod HOIP,+
R12482 T15795 T15797 punct ),cultured
R12483 T15796 T15797 auxpass were,cultured
R12484 T15797 T15787 parataxis cultured,retrovirus
R12485 T15798 T15797 npadvmod overnight,cultured
R12486 T15799 T15797 prep with,cultured
R12487 T15800 T15801 amod agonistic,anti-CD40
R12488 T15801 T15799 pobj anti-CD40,with
R12489 T15802 T15801 cc or,anti-CD40
R12490 T15803 T15806 det an,antibody
R12491 T15804 T15806 nmod isotype,antibody
R12492 T15805 T15806 compound control,antibody
R12493 T15806 T15801 conj antibody,anti-CD40
R12494 T15807 T15806 punct (,antibody
R12495 T15808 T15806 parataxis iso,antibody
R12496 T15809 T15808 punct ),iso
R12497 T15810 T15806 punct ",",antibody
R12498 T15811 T15806 conj with,antibody
R12499 T15812 T15811 cc or,with
R12500 T15813 T15811 conj without,with
R12501 T15814 T15813 pobj IL-4,without
R12502 T15815 T15756 punct .,cells
R12503 T15816 T15818 nsubjpass RNA,isolated
R12504 T15817 T15818 auxpass was,isolated
R12505 T15818 T15818 ROOT isolated,isolated
R12506 T15819 T15818 prep from,isolated
R12507 T15820 T15821 det the,cells
R12508 T15821 T15819 pobj cells,from
R12509 T15822 T15818 punct ",",isolated
R12510 T15823 T15818 conj reverse-transcribed,isolated
R12511 T15824 T15823 punct ",",reverse-transcribed
R12512 T15825 T15823 cc and,reverse-transcribed
R12513 T15826 T15827 advmod then,subjected
R12514 T15827 T15823 conj subjected,reverse-transcribed
R12515 T15828 T15827 prep to,subjected
R12516 T15829 T15830 amod quantitative,PCR
R12517 T15830 T15828 pobj PCR,to
R12518 T15831 T15832 aux to,determine
R12519 T15832 T15827 advcl determine,subjected
R12520 T15833 T15832 dobj levels,determine
R12521 T15834 T15833 prep of,levels
R12522 T15835 T15836 compound GLε,transcripts
R12523 T15836 T15834 pobj transcripts,of
R12524 T15837 T15818 punct .,isolated
R12525 T15838 T15839 nsubj Results,were
R12526 T15839 T15839 ROOT were,were
R12527 T15840 T15839 acomp normalized,were
R12528 T15841 T15840 prep to,normalized
R12529 T15842 T15843 det the,levels
R12530 T15843 T15841 pobj levels,to
R12531 T15844 T15843 prep of,levels
R12532 T15845 T15846 amod Hprt1,transcripts
R12533 T15846 T15844 pobj transcripts,of
R12534 T15847 T15843 prep in,levels
R12535 T15848 T15849 det each,sample
R12536 T15849 T15847 pobj sample,in
R12537 T15850 T15839 punct .,were
R12538 T15851 T15852 nsubj Symbols,indicate
R12539 T15852 T15852 ROOT indicate,indicate
R12540 T15853 T15854 det the,values
R12541 T15854 T15852 dobj values,indicate
R12542 T15855 T15852 prep from,indicate
R12543 T15856 T15857 compound duplicate,cultures
R12544 T15857 T15855 pobj cultures,from
R12545 T15858 T15857 punct (,cultures
R12546 T15859 T15860 det a,line
R12547 T15860 T15861 nsubj line,indicates
R12548 T15861 T15852 ccomp indicates,indicate
R12549 T15862 T15863 det the,mean
R12550 T15863 T15861 dobj mean,indicates
R12551 T15864 T15863 prep of,mean
R12552 T15865 T15867 det the,values
R12553 T15866 T15867 nummod two,values
R12554 T15867 T15864 pobj values,of
R12555 T15868 T15861 punct ),indicates
R12556 T15869 T15852 punct .,indicate
R12557 T15870 T15871 amod Similar,results
R12558 T15871 T15873 nsubjpass results,obtained
R12559 T15872 T15873 auxpass were,obtained
R12560 T15873 T15873 ROOT obtained,obtained
R12561 T15874 T15873 prep in,obtained
R12562 T15875 T15877 det a,experiment
R12563 T15876 T15877 amod second,experiment
R12564 T15877 T15874 pobj experiment,in
R12565 T15878 T15874 cc and,in
R12566 T15879 T15874 conj in,in
R12567 T15880 T15882 det an,experiment
R12568 T15881 T15882 amod additional,experiment
R12569 T15882 T15879 pobj experiment,in
R12570 T15883 T15882 prep with,experiment
R12571 T15884 T15887 det a,clone
R12572 T15885 T15887 amod second,clone
R12573 T15886 T15887 amod HOIP-deficient,clone
R12574 T15887 T15883 pobj clone,with
R12575 T15888 T15873 punct .,obtained

GO-BP

Id Subject Object Predicate Lexical cue
T16041 48-61 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T16042 396-404 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T16043 428-432 http://purl.obolibrary.org/obo/GO_0005136 denotes IL-4

GO-CC

Id Subject Object Predicate Lexical cue
T16044 109-114 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16045 142-147 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16046 259-264 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16047 460-465 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16048 396-404 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T16049 396-404 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody

sentences

Id Subject Object Predicate Lexical cue
T15736 44-115 Sentence denotes GLε transcription is defective in CD40-stimulated HOIP-deficient cells.
T15737 116-433 Sentence denotes A20.2J and HOIP-deficient cells transduced with an empty retroviral vector (A20.2J + pMIP and HOIP-/- + pMIP, respectively), or HOIP-deficient cells transduced with a HOIP-encoding retrovirus (HOIP-/- + HOIP) were cultured overnight with agonistic anti-CD40 or an isotype control antibody (iso), with or without IL-4.
T15738 434-566 Sentence denotes RNA was isolated from the cells, reverse-transcribed, and then subjected to quantitative PCR to determine levels of GLε transcripts.
T15739 567-641 Sentence denotes Results were normalized to the levels of Hprt1 transcripts in each sample.
T15740 642-740 Sentence denotes Symbols indicate the values from duplicate cultures (a line indicates the mean of the two values).
T15741 741-861 Sentence denotes Similar results were obtained in a second experiment and in an additional experiment with a second HOIP-deficient clone.
T80 0-115 Sentence denotes 10.1371/journal.pone.0023061.g003 Figure 3 GLε transcription is defective in CD40-stimulated HOIP-deficient cells.
T81 116-433 Sentence denotes A20.2J and HOIP-deficient cells transduced with an empty retroviral vector (A20.2J + pMIP and HOIP-/- + pMIP, respectively), or HOIP-deficient cells transduced with a HOIP-encoding retrovirus (HOIP-/- + HOIP) were cultured overnight with agonistic anti-CD40 or an isotype control antibody (iso), with or without IL-4.
T82 434-566 Sentence denotes RNA was isolated from the cells, reverse-transcribed, and then subjected to quantitative PCR to determine levels of GLε transcripts.
T83 567-641 Sentence denotes Results were normalized to the levels of Hprt1 transcripts in each sample.
T84 642-740 Sentence denotes Symbols indicate the values from duplicate cultures (a line indicates the mean of the two values).
T85 741-861 Sentence denotes Similar results were obtained in a second experiment and in an additional experiment with a second HOIP-deficient clone.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16020 44-47 Q28322 denotes GLε
T16021 78-82 P25942 denotes CD40
T16022 94-98 Q96EP0 denotes HOIP
T16023 116-119 P21580 denotes A20
T16024 127-131 Q96EP0 denotes HOIP
T16025 192-195 P21580 denotes A20
T16026 210-214 Q96EP0 denotes HOIP
T16027 244-248 Q96EP0 denotes HOIP
T16028 283-287 Q96EP0 denotes HOIP
T16029 309-313 Q96EP0 denotes HOIP
T16030 319-323 Q96EP0 denotes HOIP
T16031 369-373 P25942 denotes CD40
T16032 428-432 P05112 denotes IL-4
T16033 550-553 Q28322 denotes GLε
T16034 840-844 Q96EP0 denotes HOIP

test2

Id Subject Object Predicate Lexical cue Speculation
T15696 44-47 Protein denotes GLε
T15697 48-61 Transcription denotes transcription
T15698 78-82 Protein denotes CD40
T15699 94-98 Protein denotes HOIP
T15700 99-108 Negative_regulation denotes deficient
T15701 127-131 Protein denotes HOIP true
T15702 132-141 Negative_regulation denotes deficient
T15703 210-214 Protein denotes HOIP
T15704 244-248 Protein denotes HOIP
T15705 249-258 Negative_regulation denotes deficient
T15706 283-287 Protein denotes HOIP
T15707 309-313 Protein denotes HOIP
T15708 319-323 Protein denotes HOIP
T15709 428-432 Protein denotes IL-4
T15710 550-553 Protein denotes GLε
T15711 608-613 Protein denotes Hprt1
T15712 614-625 Transcription denotes transcripts
T15713 840-844 Protein denotes HOIP
T15714 845-854 Negative_regulation denotes deficient
R12415 T15696 T15697 themeOf GLε,transcription
R12416 T15699 T15700 themeOf HOIP,deficient
R12417 T15701 T15702 themeOf HOIP,deficient
R12418 T15704 T15705 themeOf HOIP,deficient
R12419 T15711 T15712 themeOf Hprt1,transcripts
R12420 T15713 T15714 themeOf HOIP,deficient