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PMC:314463 / 62303-63145 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T13578 0-3 DT denotes The
T13579 14-23 NN denotes transgene
T13580 4-9 NN denotes Hoxb6
T13581 10-13 NN denotes Cre
T13582 9-10 HYPH denotes -
T13583 80-89 VBN denotes expressed
T13584 24-33 VBN denotes described
T13585 34-36 IN denotes by
T13586 37-42 NN denotes Kuehn
T13587 43-46 CC denotes and
T13588 47-57 NNS denotes colleagues
T13589 58-59 -LRB- denotes (
T13590 59-63 NNP denotes Lowe
T13591 64-66 FW denotes et
T13592 67-70 FW denotes al.
T13593 71-75 CD denotes 2000
T13594 75-76 -RRB- denotes )
T13595 77-79 VBZ denotes is
T13596 90-92 IN denotes in
T13597 93-96 DT denotes the
T13598 105-110 NN denotes plate
T13599 97-104 JJ denotes lateral
T13600 111-114 CC denotes but
T13601 115-118 RB denotes not
T13602 119-122 DT denotes the
T13603 131-139 NN denotes mesoderm
T13604 123-130 JJ denotes somitic
T13605 140-142 IN denotes of
T13606 143-146 DT denotes the
T13607 147-152 NN denotes trunk
T13608 152-154 , denotes ,
T13609 154-163 VBG denotes beginning
T13610 164-166 IN denotes at
T13611 167-171 NN denotes E9.5
T13612 171-172 . denotes .
T13613 172-299 sentence denotes Animals doubly heterozygous for this transgene and the R26R reporter gene were used as a source of whole skin at P1.5 or P4.5.
T13614 173-180 NNS denotes Animals
T13615 252-256 VBN denotes used
T13616 181-187 RB denotes doubly
T13617 188-200 JJ denotes heterozygous
T13618 201-204 IN denotes for
T13619 205-209 DT denotes this
T13620 210-219 NN denotes transgene
T13621 220-223 CC denotes and
T13622 224-227 DT denotes the
T13623 242-246 NN denotes gene
T13624 228-232 NN denotes R26R
T13625 233-241 NN denotes reporter
T13626 247-251 VBD denotes were
T13627 257-259 IN denotes as
T13628 260-261 DT denotes a
T13629 262-268 NN denotes source
T13630 269-271 IN denotes of
T13631 272-277 JJ denotes whole
T13632 278-282 NN denotes skin
T13633 283-285 IN denotes at
T13634 286-290 NN denotes P1.5
T13635 291-293 CC denotes or
T13636 294-298 NN denotes P4.5
T13637 298-299 . denotes .
T13638 299-497 sentence denotes Skin sections parallel to the dorsoventral axis were prepared with a single incision along the ventral midline and stained for β-galactosidase activity using standard protocols at room temperature.
T13639 300-304 NN denotes Skin
T13640 305-313 NNS denotes sections
T13641 353-361 VBN denotes prepared
T13642 314-322 JJ denotes parallel
T13643 323-325 IN denotes to
T13644 326-329 DT denotes the
T13645 343-347 NN denotes axis
T13646 330-342 JJ denotes dorsoventral
T13647 348-352 VBD denotes were
T13648 362-366 IN denotes with
T13649 367-368 DT denotes a
T13650 376-384 NN denotes incision
T13651 369-375 JJ denotes single
T13652 385-390 IN denotes along
T13653 391-394 DT denotes the
T13654 403-410 NN denotes midline
T13655 395-402 JJ denotes ventral
T13656 411-414 CC denotes and
T13657 415-422 VBN denotes stained
T13658 423-426 IN denotes for
T13659 427-428 NN denotes β
T13660 429-442 NN denotes galactosidase
T13661 428-429 HYPH denotes -
T13662 443-451 NN denotes activity
T13663 452-457 VBG denotes using
T13664 458-466 JJ denotes standard
T13665 467-476 NNS denotes protocols
T13666 477-479 IN denotes at
T13667 480-484 NN denotes room
T13668 485-496 NN denotes temperature
T13669 496-497 . denotes .
T13670 497-580 sentence denotes The P1.5 sample was stained overnight and the P4.5 samples were stained for 5.5 h.
T13671 498-501 DT denotes The
T13672 507-513 NN denotes sample
T13673 502-506 NN denotes P1.5
T13674 518-525 VBN denotes stained
T13675 514-517 VBD denotes was
T13676 526-535 RB denotes overnight
T13677 536-539 CC denotes and
T13678 540-543 DT denotes the
T13679 549-556 NNS denotes samples
T13680 544-548 NN denotes P4.5
T13681 562-569 VBN denotes stained
T13682 557-561 VBD denotes were
T13683 570-573 IN denotes for
T13684 574-577 CD denotes 5.5
T13685 578-579 NN denotes h
T13686 579-580 . denotes .
T13687 580-664 sentence denotes Similar nonstained skin sections were prepared from animals carrying the at allele.
T13688 581-588 JJ denotes Similar
T13689 605-613 NNS denotes sections
T13690 589-599 JJ denotes nonstained
T13691 600-604 NN denotes skin
T13692 619-627 VBN denotes prepared
T13693 614-618 VBD denotes were
T13694 628-632 IN denotes from
T13695 633-640 NNS denotes animals
T13696 641-649 VBG denotes carrying
T13697 650-653 DT denotes the
T13698 657-663 NN denotes allele
T13699 654-656 NN denotes at
T13700 663-664 . denotes .
T13701 664-842 sentence denotes Images of the different skin fragments were aligned and scaled, and the relative position of the somite–lateral plate and the pigmentation boundaries were measured using ImageJ.
T13702 665-671 NNS denotes Images
T13703 709-716 VBN denotes aligned
T13704 672-674 IN denotes of
T13705 675-678 DT denotes the
T13706 694-703 NNS denotes fragments
T13707 679-688 JJ denotes different
T13708 689-693 NN denotes skin
T13709 704-708 VBD denotes were
T13710 717-720 CC denotes and
T13711 721-727 VBN denotes scaled
T13712 727-729 , denotes ,
T13713 729-732 CC denotes and
T13714 733-736 DT denotes the
T13715 746-754 NN denotes position
T13716 737-745 JJ denotes relative
T13717 820-828 VBN denotes measured
T13718 755-757 IN denotes of
T13719 758-761 DT denotes the
T13720 777-782 NN denotes plate
T13721 762-768 NN denotes somite
T13722 769-776 JJ denotes lateral
T13723 768-769 HYPH denotes –
T13724 783-786 CC denotes and
T13725 787-790 DT denotes the
T13726 804-814 NNS denotes boundaries
T13727 791-803 NN denotes pigmentation
T13728 815-819 VBD denotes were
T13729 829-834 VBG denotes using
T13730 835-841 NN denotes ImageJ
T13731 841-842 . denotes .
R9504 T13578 T13579 det The,transgene
R9505 T13579 T13583 nsubjpass transgene,expressed
R9506 T13580 T13581 compound Hoxb6,Cre
R9507 T13581 T13579 compound Cre,transgene
R9508 T13582 T13581 punct -,Cre
R9509 T13584 T13579 acl described,transgene
R9510 T13585 T13584 agent by,described
R9511 T13586 T13585 pobj Kuehn,by
R9512 T13587 T13586 cc and,Kuehn
R9513 T13588 T13586 conj colleagues,Kuehn
R9514 T13589 T13590 punct (,Lowe
R9515 T13590 T13584 meta Lowe,described
R9516 T13591 T13590 nmod et,Lowe
R9517 T13592 T13590 nmod al.,Lowe
R9518 T13593 T13590 nummod 2000,Lowe
R9519 T13594 T13590 punct ),Lowe
R9520 T13595 T13583 auxpass is,expressed
R9521 T13596 T13583 prep in,expressed
R9522 T13597 T13598 det the,plate
R9523 T13598 T13596 pobj plate,in
R9524 T13599 T13598 amod lateral,plate
R9525 T13600 T13598 cc but,plate
R9526 T13601 T13600 neg not,but
R9527 T13602 T13603 det the,mesoderm
R9528 T13603 T13598 conj mesoderm,plate
R9529 T13604 T13603 amod somitic,mesoderm
R9530 T13605 T13598 prep of,plate
R9531 T13606 T13607 det the,trunk
R9532 T13607 T13605 pobj trunk,of
R9533 T13608 T13583 punct ", ",expressed
R9534 T13609 T13583 advcl beginning,expressed
R9535 T13610 T13609 prep at,beginning
R9536 T13611 T13610 pobj E9.5,at
R9537 T13612 T13583 punct .,expressed
R9538 T13614 T13615 nsubjpass Animals,used
R9539 T13616 T13617 advmod doubly,heterozygous
R9540 T13617 T13614 amod heterozygous,Animals
R9541 T13618 T13617 prep for,heterozygous
R9542 T13619 T13620 det this,transgene
R9543 T13620 T13618 pobj transgene,for
R9544 T13621 T13620 cc and,transgene
R9545 T13622 T13623 det the,gene
R9546 T13623 T13620 conj gene,transgene
R9547 T13624 T13623 compound R26R,gene
R9548 T13625 T13623 compound reporter,gene
R9549 T13626 T13615 auxpass were,used
R9550 T13627 T13615 prep as,used
R9551 T13628 T13629 det a,source
R9552 T13629 T13627 pobj source,as
R9553 T13630 T13629 prep of,source
R9554 T13631 T13632 amod whole,skin
R9555 T13632 T13630 pobj skin,of
R9556 T13633 T13615 prep at,used
R9557 T13634 T13633 pobj P1.5,at
R9558 T13635 T13634 cc or,P1.5
R9559 T13636 T13634 conj P4.5,P1.5
R9560 T13637 T13615 punct .,used
R9561 T13639 T13640 compound Skin,sections
R9562 T13640 T13641 nsubjpass sections,prepared
R9563 T13642 T13640 amod parallel,sections
R9564 T13643 T13642 prep to,parallel
R9565 T13644 T13645 det the,axis
R9566 T13645 T13643 pobj axis,to
R9567 T13646 T13645 amod dorsoventral,axis
R9568 T13647 T13641 auxpass were,prepared
R9569 T13648 T13641 prep with,prepared
R9570 T13649 T13650 det a,incision
R9571 T13650 T13648 pobj incision,with
R9572 T13651 T13650 amod single,incision
R9573 T13652 T13650 prep along,incision
R9574 T13653 T13654 det the,midline
R9575 T13654 T13652 pobj midline,along
R9576 T13655 T13654 amod ventral,midline
R9577 T13656 T13641 cc and,prepared
R9578 T13657 T13641 conj stained,prepared
R9579 T13658 T13657 prep for,stained
R9580 T13659 T13660 compound β,galactosidase
R9581 T13660 T13662 compound galactosidase,activity
R9582 T13661 T13660 punct -,galactosidase
R9583 T13662 T13658 pobj activity,for
R9584 T13663 T13657 advcl using,stained
R9585 T13664 T13665 amod standard,protocols
R9586 T13665 T13663 dobj protocols,using
R9587 T13666 T13657 prep at,stained
R9588 T13667 T13668 compound room,temperature
R9589 T13668 T13666 pobj temperature,at
R9590 T13669 T13641 punct .,prepared
R9591 T13671 T13672 det The,sample
R9592 T13672 T13674 nsubjpass sample,stained
R9593 T13673 T13672 compound P1.5,sample
R9594 T13675 T13674 auxpass was,stained
R9595 T13676 T13674 advmod overnight,stained
R9596 T13677 T13674 cc and,stained
R9597 T13678 T13679 det the,samples
R9598 T13679 T13681 nsubjpass samples,stained
R9599 T13680 T13679 compound P4.5,samples
R9600 T13681 T13674 conj stained,stained
R9601 T13682 T13681 auxpass were,stained
R9602 T13683 T13681 prep for,stained
R9603 T13684 T13685 nummod 5.5,h
R9604 T13685 T13683 pobj h,for
R9605 T13686 T13681 punct .,stained
R9606 T13688 T13689 amod Similar,sections
R9607 T13689 T13692 nsubjpass sections,prepared
R9608 T13690 T13689 amod nonstained,sections
R9609 T13691 T13689 compound skin,sections
R9610 T13693 T13692 auxpass were,prepared
R9611 T13694 T13692 prep from,prepared
R9612 T13695 T13694 pobj animals,from
R9613 T13696 T13695 acl carrying,animals
R9614 T13697 T13698 det the,allele
R9615 T13698 T13696 dobj allele,carrying
R9616 T13699 T13698 compound at,allele
R9617 T13700 T13692 punct .,prepared
R9618 T13702 T13703 nsubjpass Images,aligned
R9619 T13704 T13702 prep of,Images
R9620 T13705 T13706 det the,fragments
R9621 T13706 T13704 pobj fragments,of
R9622 T13707 T13706 amod different,fragments
R9623 T13708 T13706 compound skin,fragments
R9624 T13709 T13703 auxpass were,aligned
R9625 T13710 T13703 cc and,aligned
R9626 T13711 T13703 conj scaled,aligned
R9627 T13712 T13703 punct ", ",aligned
R9628 T13713 T13703 cc and,aligned
R9629 T13714 T13715 det the,position
R9630 T13715 T13717 nsubjpass position,measured
R9631 T13716 T13715 amod relative,position
R9632 T13717 T13703 conj measured,aligned
R9633 T13718 T13715 prep of,position
R9634 T13719 T13720 det the,plate
R9635 T13720 T13718 pobj plate,of
R9636 T13721 T13722 npadvmod somite,lateral
R9637 T13722 T13720 amod lateral,plate
R9638 T13723 T13722 punct –,lateral
R9639 T13724 T13720 cc and,plate
R9640 T13725 T13726 det the,boundaries
R9641 T13726 T13720 conj boundaries,plate
R9642 T13727 T13726 compound pigmentation,boundaries
R9643 T13728 T13717 auxpass were,measured
R9644 T13729 T13717 advcl using,measured
R9645 T13730 T13729 dobj ImageJ,using
R9646 T13731 T13717 punct .,measured

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13533 4-9 PR:000008703 denotes Hoxb6
T13534 14-23 SO:0000902 denotes transgene
T13535 80-89 GO:0010467 denotes expressed
T13536 97-110 _FRAGMENT denotes lateral plate
T13537 131-139 UBERON:0003081 denotes mesoderm
T13538 123-139 UBERON:0003077 denotes somitic mesoderm
T13539 147-152 UBERON:0002100 denotes trunk
T13540 173-180 NCBITaxon:33208 denotes Animals
T13541 210-219 SO:0000902 denotes transgene
T13542 242-246 SO:0000704 denotes gene
T13543 395-410 UBERON:0009571 denotes ventral midline
T13544 633-640 NCBITaxon:33208 denotes animals
T13545 657-663 SO:0001023 denotes allele
T13546 762-768 UBERON:0002329 denotes somite
T13547 769-782 UBERON:0003081 denotes lateral plate
R9496 T13537 T13536 _lexicallyChainedTo mesoderm,lateral plate

2_test

Id Subject Object Predicate Lexical cue
14737183-10686603-84903086 71-75 10686603 denotes 2000
T70459 71-75 10686603 denotes 2000

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13549 4-9 PR_EXT:000008703 denotes Hoxb6
T13550 14-23 SO_EXT:0000902 denotes transgene
T13551 80-89 GO:0010467 denotes expressed
T13552 97-110 _FRAGMENT denotes lateral plate
T13553 131-139 UBERON:0003081 denotes mesoderm
T13554 123-139 UBERON:0003077 denotes somitic mesoderm
T13555 147-152 UBERON:0002100 denotes trunk
T13556 173-180 NCBITaxon:33208 denotes Animals
T13557 210-219 SO_EXT:0000902 denotes transgene
T13558 242-246 SO_EXT:0000704 denotes gene
T13559 278-282 UBERON_EXT:zone_of_skin_or_skin_of_body denotes skin
T13560 300-304 UBERON_EXT:zone_of_skin_or_skin_of_body denotes Skin
T13561 395-410 UBERON:0009571 denotes ventral midline
T13562 427-442 GO_EXT:0004565 denotes β-galactosidase
T13563 600-604 UBERON_EXT:zone_of_skin_or_skin_of_body denotes skin
T13564 633-640 NCBITaxon:33208 denotes animals
T13565 657-663 SO_EXT:0001023 denotes allele
T13566 689-693 UBERON_EXT:zone_of_skin_or_skin_of_body denotes skin
T13567 762-768 UBERON:0002329 denotes somite
T13568 769-782 UBERON:0003081 denotes lateral plate
T13569 791-803 GO_PATO_EXT:biological_pigmentation_process_or_quality denotes pigmentation
R9497 T13553 T13552 _lexicallyChainedTo mesoderm,lateral plate