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PMC:314463 / 57787-60081 JSONTXT

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Id Subject Object Predicate Lexical cue
T12538 0-10 JJ denotes Positional
T12539 11-18 NN denotes cloning
T12540 18-132 sentence denotes A high-resolution map for deH was generated from an intersubspecific intercross between deH/deH and CAST/Ei mice.
T12541 19-20 DT denotes A
T12542 37-40 NN denotes map
T12543 21-25 JJ denotes high
T12544 26-36 NN denotes resolution
T12545 25-26 HYPH denotes -
T12546 53-62 VBN denotes generated
T12547 41-44 IN denotes for
T12548 45-48 NN denotes deH
T12549 49-52 VBD denotes was
T12550 63-67 IN denotes from
T12551 68-70 DT denotes an
T12552 88-98 NN denotes intercross
T12553 71-87 JJ denotes intersubspecific
T12554 99-106 IN denotes between
T12555 107-110 NN denotes deH
T12556 111-114 NN denotes deH
T12557 110-111 HYPH denotes /
T12558 127-131 NNS denotes mice
T12559 115-118 CC denotes and
T12560 119-123 NN denotes CAST
T12561 124-126 NN denotes Ei
T12562 123-124 HYPH denotes /
T12563 131-132 . denotes .
T12564 132-208 sentence denotes We initially localized deH to a 1 cM interval between D3Mit233 and D3Mit11.
T12565 133-135 PRP denotes We
T12566 146-155 VBD denotes localized
T12567 136-145 RB denotes initially
T12568 156-159 NN denotes deH
T12569 160-162 IN denotes to
T12570 163-164 DT denotes a
T12571 170-178 NN denotes interval
T12572 165-166 CD denotes 1
T12573 167-169 NN denotes cM
T12574 179-186 IN denotes between
T12575 187-195 NN denotes D3Mit233
T12576 196-199 CC denotes and
T12577 200-207 NN denotes D3Mit11
T12578 207-208 . denotes .
T12579 208-380 sentence denotes F2 animals carrying recombinant chromosomes between these markers whose genotype at de was indeterminate (deH/+ or +/+) were progeny-tested by crossing to deH/deH animals.
T12580 209-211 NN denotes F2
T12581 212-219 NNS denotes animals
T12582 342-348 VBN denotes tested
T12583 220-228 VBG denotes carrying
T12584 229-240 JJ denotes recombinant
T12585 241-252 NNS denotes chromosomes
T12586 253-260 IN denotes between
T12587 261-266 DT denotes these
T12588 267-274 NNS denotes markers
T12589 275-280 WP$ denotes whose
T12590 281-289 NN denotes genotype
T12591 296-299 VBD denotes was
T12592 290-292 IN denotes at
T12593 293-295 NN denotes de
T12594 300-313 JJ denotes indeterminate
T12595 314-315 -LRB- denotes (
T12596 315-318 NN denotes deH
T12597 318-319 HYPH denotes /
T12598 319-320 SYM denotes +
T12599 321-323 CC denotes or
T12600 324-325 SYM denotes +
T12601 326-327 SYM denotes +
T12602 325-326 HYPH denotes /
T12603 327-328 -RRB- denotes )
T12604 329-333 VBD denotes were
T12605 334-341 NN denotes progeny
T12606 341-342 HYPH denotes -
T12607 349-351 IN denotes by
T12608 352-360 VBG denotes crossing
T12609 361-363 IN denotes to
T12610 364-367 NN denotes deH
T12611 368-371 NN denotes deH
T12612 367-368 HYPH denotes /
T12613 372-379 NNS denotes animals
T12614 379-380 . denotes .
T12615 380-684 sentence denotes Further genetic mapping established a minimal region of 0.1 cM between D3Mit213 and 16.MMHAP32FLF1; these markers were used to initiate construction of a physical map with BAC genomic clones (Research Genetics, Huntsville, Alabama, United States, and Genome Systems, St. Louis, Missouri, United States).
T12616 381-388 JJ denotes Further
T12617 397-404 NN denotes mapping
T12618 389-396 JJ denotes genetic
T12619 405-416 VBD denotes established
T12620 500-504 VBN denotes used
T12621 417-418 DT denotes a
T12622 427-433 NN denotes region
T12623 419-426 JJ denotes minimal
T12624 434-436 IN denotes of
T12625 437-440 CD denotes 0.1
T12626 441-443 NN denotes cM
T12627 444-451 IN denotes between
T12628 452-460 NN denotes D3Mit213
T12629 461-464 CC denotes and
T12630 465-479 NN denotes 16.MMHAP32FLF1
T12631 479-480 : denotes ;
T12632 481-486 DT denotes these
T12633 487-494 NNS denotes markers
T12634 495-499 VBD denotes were
T12635 505-507 TO denotes to
T12636 508-516 VB denotes initiate
T12637 517-529 NN denotes construction
T12638 530-532 IN denotes of
T12639 533-534 DT denotes a
T12640 544-547 NN denotes map
T12641 535-543 JJ denotes physical
T12642 548-552 IN denotes with
T12643 553-556 NN denotes BAC
T12644 565-571 NNS denotes clones
T12645 557-564 JJ denotes genomic
T12646 572-573 -LRB- denotes (
T12647 582-590 NNP denotes Genetics
T12648 573-581 NNP denotes Research
T12649 590-592 , denotes ,
T12650 592-602 NNP denotes Huntsville
T12651 602-604 , denotes ,
T12652 604-611 NNP denotes Alabama
T12653 611-613 , denotes ,
T12654 613-619 NNP denotes United
T12655 620-626 NNP denotes States
T12656 626-628 , denotes ,
T12657 628-631 CC denotes and
T12658 632-638 NNP denotes Genome
T12659 639-646 NNP denotes Systems
T12660 646-648 , denotes ,
T12661 648-651 NNP denotes St.
T12662 652-657 NNP denotes Louis
T12663 657-659 , denotes ,
T12664 659-667 NNP denotes Missouri
T12665 667-669 , denotes ,
T12666 669-675 NNP denotes United
T12667 676-682 NNP denotes States
T12668 682-683 -RRB- denotes )
T12669 683-684 . denotes .
T12670 684-837 sentence denotes End sequence from those BACs was used to develop SSCP markers M1 to M3, as depicted in Figure 3, and to establish a minimal physical interval of 1.4 Mb.
T12671 685-688 NN denotes End
T12672 689-697 NN denotes sequence
T12673 718-722 VBN denotes used
T12674 698-702 IN denotes from
T12675 703-708 DT denotes those
T12676 709-713 NNS denotes BACs
T12677 714-717 VBD denotes was
T12678 723-725 TO denotes to
T12679 726-733 VB denotes develop
T12680 734-738 NN denotes SSCP
T12681 739-746 NNS denotes markers
T12682 747-749 NN denotes M1
T12683 750-752 IN denotes to
T12684 753-755 NN denotes M3
T12685 755-757 , denotes ,
T12686 757-759 IN denotes as
T12687 760-768 VBN denotes depicted
T12688 769-771 IN denotes in
T12689 772-778 NN denotes Figure
T12690 779-780 CD denotes 3
T12691 780-782 , denotes ,
T12692 782-785 CC denotes and
T12693 786-788 TO denotes to
T12694 789-798 VB denotes establish
T12695 799-800 DT denotes a
T12696 818-826 NN denotes interval
T12697 801-808 JJ denotes minimal
T12698 809-817 JJ denotes physical
T12699 827-829 IN denotes of
T12700 830-833 CD denotes 1.4
T12701 834-836 NN denotes Mb
T12702 836-837 . denotes .
T12703 837-1166 sentence denotes Primer pairs used were TTCCCTCCAATAAGTTCTGGGTACC and AAGCTTGCTGCTCTGGATTCCATTTGTAG for M1, CCTTCATTTTTTTTTCAAGTAAAA and AAGCTTGGCTTAGTCCCAGTGGC for M2, CCTCCAGGAAGATCTACTAGGCAC and ATGGAAAAAAAAAAGTAAGATTGAAAG for M3, and TGGTTATCGATCTGTGGACCATTC and AAGTGAGAGAGCAGGATGGACCAC for M4 (the M4 marker represents STS 16.MMHAP32FLF1).
T12704 838-844 NN denotes Primer
T12705 845-850 NNS denotes pairs
T12706 856-860 VBD denotes were
T12707 851-855 VBN denotes used
T12708 861-886 NN denotes TTCCCTCCAATAAGTTCTGGGTACC
T12709 887-890 CC denotes and
T12710 891-920 NN denotes AAGCTTGCTGCTCTGGATTCCATTTGTAG
T12711 921-924 IN denotes for
T12712 925-927 NN denotes M1
T12713 927-929 , denotes ,
T12714 929-953 NN denotes CCTTCATTTTTTTTTCAAGTAAAA
T12715 954-957 CC denotes and
T12716 958-981 NN denotes AAGCTTGGCTTAGTCCCAGTGGC
T12717 982-985 IN denotes for
T12718 986-988 NN denotes M2
T12719 988-990 , denotes ,
T12720 990-1014 NN denotes CCTCCAGGAAGATCTACTAGGCAC
T12721 1015-1018 CC denotes and
T12722 1019-1046 NN denotes ATGGAAAAAAAAAAGTAAGATTGAAAG
T12723 1047-1050 IN denotes for
T12724 1051-1053 NN denotes M3
T12725 1053-1055 , denotes ,
T12726 1055-1058 CC denotes and
T12727 1059-1083 NN denotes TGGTTATCGATCTGTGGACCATTC
T12728 1084-1087 CC denotes and
T12729 1088-1112 NN denotes AAGTGAGAGAGCAGGATGGACCAC
T12730 1113-1116 IN denotes for
T12731 1117-1119 NN denotes M4
T12732 1120-1121 -LRB- denotes (
T12733 1135-1145 VBZ denotes represents
T12734 1121-1124 DT denotes the
T12735 1128-1134 NN denotes marker
T12736 1125-1127 NN denotes M4
T12737 1146-1149 NN denotes STS
T12738 1150-1164 NN denotes 16.MMHAP32FLF1
T12739 1164-1165 -RRB- denotes )
T12740 1165-1166 . denotes .
T12741 1166-1566 sentence denotes Genomic sequence and annotations were obtained from the UCSC Genome Browser February 2003 assembly version mm3 (http://genome.ucsc.edu); the 1.4 Mb interval between M1 and M4 contains eight genes: four hydroxysteroid dehydrogenase isomerases, Hsd3b3, Hsd3b2, Hsd3b6, and Hsd3b1; an hydroacid oxidase, Hao3; a tryptophanyl-tRNA synthetase, Wars2; a T-box gene, Tbx15; and a novel gene, 4931427F14Rik.
T12742 1167-1174 JJ denotes Genomic
T12743 1175-1183 NN denotes sequence
T12744 1205-1213 VBN denotes obtained
T12745 1184-1187 CC denotes and
T12746 1188-1199 NNS denotes annotations
T12747 1200-1204 VBD denotes were
T12748 1342-1350 VBZ denotes contains
T12749 1214-1218 IN denotes from
T12750 1219-1222 DT denotes the
T12751 1235-1242 NN denotes Browser
T12752 1223-1227 NN denotes UCSC
T12753 1228-1234 NN denotes Genome
T12754 1274-1277 NN denotes mm3
T12755 1243-1251 NNP denotes February
T12756 1257-1265 NN denotes assembly
T12757 1252-1256 CD denotes 2003
T12758 1266-1273 NN denotes version
T12759 1278-1279 -LRB- denotes (
T12760 1279-1301 NN denotes http://genome.ucsc.edu
T12761 1301-1302 -RRB- denotes )
T12762 1302-1303 : denotes ;
T12763 1304-1307 DT denotes the
T12764 1315-1323 NN denotes interval
T12765 1308-1311 CD denotes 1.4
T12766 1312-1314 NN denotes Mb
T12767 1324-1331 IN denotes between
T12768 1332-1334 NN denotes M1
T12769 1335-1338 CC denotes and
T12770 1339-1341 NN denotes M4
T12771 1351-1356 CD denotes eight
T12772 1357-1362 NNS denotes genes
T12773 1362-1364 : denotes :
T12774 1364-1368 CD denotes four
T12775 1398-1408 NNS denotes isomerases
T12776 1369-1383 NN denotes hydroxysteroid
T12777 1384-1397 NN denotes dehydrogenase
T12778 1408-1410 , denotes ,
T12779 1410-1416 NN denotes Hsd3b3
T12780 1416-1418 , denotes ,
T12781 1418-1424 NN denotes Hsd3b2
T12782 1424-1426 , denotes ,
T12783 1426-1432 NN denotes Hsd3b6
T12784 1432-1434 , denotes ,
T12785 1434-1437 CC denotes and
T12786 1438-1444 NN denotes Hsd3b1
T12787 1444-1445 , denotes ;
T12788 1446-1448 DT denotes an
T12789 1459-1466 NN denotes oxidase
T12790 1449-1458 NN denotes hydroacid
T12791 1466-1468 , denotes ,
T12792 1468-1472 NN denotes Hao3
T12793 1472-1473 , denotes ;
T12794 1474-1475 DT denotes a
T12795 1494-1504 NN denotes synthetase
T12796 1476-1488 NN denotes tryptophanyl
T12797 1489-1493 NN denotes tRNA
T12798 1488-1489 HYPH denotes -
T12799 1504-1506 , denotes ,
T12800 1506-1511 NN denotes Wars2
T12801 1511-1512 , denotes ;
T12802 1513-1514 DT denotes a
T12803 1521-1525 NN denotes gene
T12804 1515-1516 NN denotes T
T12805 1517-1520 NN denotes box
T12806 1516-1517 HYPH denotes -
T12807 1525-1527 , denotes ,
T12808 1527-1532 NN denotes Tbx15
T12809 1532-1533 , denotes ;
T12810 1534-1537 CC denotes and
T12811 1538-1539 DT denotes a
T12812 1546-1550 NN denotes gene
T12813 1540-1545 JJ denotes novel
T12814 1550-1552 , denotes ,
T12815 1552-1565 NN denotes 4931427F14Rik
T12816 1565-1566 . denotes .
T12817 1566-1833 sentence denotes In the genome sequence, M1 primers correspond to AGGCCTCCAATAAGTTCTGGGTACC and AAGCTTGCTCTCTGGATTCCATTTGTAG, the M2 reverse primer corresponds to AAGCTTGGCTTTAGTCCCAGTGGGC, and the M3 primers correspond to CCTCCAGGAAGAATCTACTAGGCAC and AATGAAAAAAAAAAAAGTAAGATTGAAAG.
T12818 1567-1569 IN denotes In
T12819 1602-1612 VBP denotes correspond
T12820 1570-1573 DT denotes the
T12821 1581-1589 NN denotes sequence
T12822 1574-1580 NN denotes genome
T12823 1589-1591 , denotes ,
T12824 1591-1593 NN denotes M1
T12825 1594-1601 NNS denotes primers
T12826 1613-1615 IN denotes to
T12827 1616-1641 NN denotes AGGCCTCCAATAAGTTCTGGGTACC
T12828 1642-1645 CC denotes and
T12829 1646-1674 NN denotes AAGCTTGCTCTCTGGATTCCATTTGTAG
T12830 1674-1676 , denotes ,
T12831 1676-1679 DT denotes the
T12832 1691-1697 NN denotes primer
T12833 1680-1682 NN denotes M2
T12834 1683-1690 JJ denotes reverse
T12835 1698-1709 VBZ denotes corresponds
T12836 1710-1712 IN denotes to
T12837 1713-1738 NN denotes AAGCTTGGCTTTAGTCCCAGTGGGC
T12838 1738-1740 , denotes ,
T12839 1740-1743 CC denotes and
T12840 1744-1747 DT denotes the
T12841 1751-1758 NNS denotes primers
T12842 1748-1750 NN denotes M3
T12843 1759-1769 VBP denotes correspond
T12844 1770-1772 IN denotes to
T12845 1773-1798 NN denotes CCTCCAGGAAGAATCTACTAGGCAC
T12846 1799-1802 CC denotes and
T12847 1803-1832 NN denotes AATGAAAAAAAAAAAAGTAAGATTGAAAG
T12848 1832-1833 . denotes .
T12849 1833-2017 sentence denotes Minor differences among the sequences of the primers we obtained from the BAC ends and the public genome sequence may represent strain differences or sequencing errors on the BAC DNA.
T12850 1834-1839 JJ denotes Minor
T12851 1840-1851 NNS denotes differences
T12852 1952-1961 VB denotes represent
T12853 1852-1857 IN denotes among
T12854 1858-1861 DT denotes the
T12855 1862-1871 NNS denotes sequences
T12856 1872-1874 IN denotes of
T12857 1875-1878 DT denotes the
T12858 1879-1886 NNS denotes primers
T12859 1887-1889 PRP denotes we
T12860 1890-1898 VBD denotes obtained
T12861 1899-1903 IN denotes from
T12862 1904-1907 DT denotes the
T12863 1908-1911 NN denotes BAC
T12864 1912-1916 VBZ denotes ends
T12865 1917-1920 CC denotes and
T12866 1921-1924 DT denotes the
T12867 1939-1947 NN denotes sequence
T12868 1925-1931 JJ denotes public
T12869 1932-1938 NN denotes genome
T12870 1948-1951 MD denotes may
T12871 1962-1968 NN denotes strain
T12872 1969-1980 NNS denotes differences
T12873 1981-1983 CC denotes or
T12874 1984-1994 NN denotes sequencing
T12875 1995-2001 NNS denotes errors
T12876 2002-2004 IN denotes on
T12877 2005-2008 DT denotes the
T12878 2013-2016 NN denotes DNA
T12879 2009-2012 NN denotes BAC
T12880 2016-2017 . denotes .
T12881 2017-2177 sentence denotes A multiplex genotyping assay was developed to genotype for the deH deletion using primers GGAGCAGATCCAATTGCTTT, TCCATAGCCCATCTTCACAA, and CATGTCCACTTCTGCTTCCA.
T12882 2018-2019 DT denotes A
T12883 2041-2046 NN denotes assay
T12884 2020-2029 JJ denotes multiplex
T12885 2030-2040 VBG denotes genotyping
T12886 2051-2060 VBN denotes developed
T12887 2047-2050 VBD denotes was
T12888 2061-2063 TO denotes to
T12889 2064-2072 VB denotes genotype
T12890 2073-2076 IN denotes for
T12891 2077-2080 DT denotes the
T12892 2085-2093 NN denotes deletion
T12893 2081-2084 NN denotes deH
T12894 2094-2099 VBG denotes using
T12895 2100-2107 NNS denotes primers
T12896 2108-2128 NN denotes GGAGCAGATCCAATTGCTTT
T12897 2128-2130 , denotes ,
T12898 2130-2150 NN denotes TCCATAGCCCATCTTCACAA
T12899 2150-2152 , denotes ,
T12900 2152-2155 CC denotes and
T12901 2156-2176 NN denotes CATGTCCACTTCTGCTTCCA
T12902 2176-2177 . denotes .
T12903 2177-2294 sentence denotes This PCR assay produces a 392 bp product from the deH chromosome and a 595 bp product from the nonmutant chromosome.
T12904 2178-2182 DT denotes This
T12905 2187-2192 NN denotes assay
T12906 2183-2186 NN denotes PCR
T12907 2193-2201 VBZ denotes produces
T12908 2202-2203 DT denotes a
T12909 2211-2218 NN denotes product
T12910 2204-2207 CD denotes 392
T12911 2208-2210 NN denotes bp
T12912 2219-2223 IN denotes from
T12913 2224-2227 DT denotes the
T12914 2232-2242 NN denotes chromosome
T12915 2228-2231 NN denotes deH
T12916 2243-2246 CC denotes and
T12917 2247-2248 DT denotes a
T12918 2256-2263 NN denotes product
T12919 2249-2252 CD denotes 595
T12920 2253-2255 NN denotes bp
T12921 2264-2268 IN denotes from
T12922 2269-2272 DT denotes the
T12923 2283-2293 NN denotes chromosome
T12924 2273-2282 JJ denotes nonmutant
T12925 2293-2294 . denotes .
R8718 T12538 T12539 amod Positional,cloning
R8719 T12541 T12542 det A,map
R8720 T12542 T12546 nsubjpass map,generated
R8721 T12543 T12544 amod high,resolution
R8722 T12544 T12542 compound resolution,map
R8723 T12545 T12544 punct -,resolution
R8724 T12547 T12542 prep for,map
R8725 T12548 T12547 pobj deH,for
R8726 T12549 T12546 auxpass was,generated
R8727 T12550 T12546 prep from,generated
R8728 T12551 T12552 det an,intercross
R8729 T12552 T12550 pobj intercross,from
R8730 T12553 T12552 amod intersubspecific,intercross
R8731 T12554 T12552 prep between,intercross
R8732 T12555 T12556 nmod deH,deH
R8733 T12556 T12558 nmod deH,mice
R8734 T12557 T12556 punct /,deH
R8735 T12558 T12554 pobj mice,between
R8736 T12559 T12556 cc and,deH
R8737 T12560 T12561 compound CAST,Ei
R8738 T12561 T12556 conj Ei,deH
R8739 T12562 T12561 punct /,Ei
R8740 T12563 T12546 punct .,generated
R8741 T12565 T12566 nsubj We,localized
R8742 T12567 T12566 advmod initially,localized
R8743 T12568 T12566 dobj deH,localized
R8744 T12569 T12566 prep to,localized
R8745 T12570 T12571 det a,interval
R8746 T12571 T12569 pobj interval,to
R8747 T12572 T12573 nummod 1,cM
R8748 T12573 T12571 compound cM,interval
R8749 T12574 T12571 prep between,interval
R8750 T12575 T12574 pobj D3Mit233,between
R8751 T12576 T12575 cc and,D3Mit233
R8752 T12577 T12575 conj D3Mit11,D3Mit233
R8753 T12578 T12566 punct .,localized
R8754 T12580 T12581 compound F2,animals
R8755 T12581 T12582 nsubjpass animals,tested
R8756 T12583 T12581 acl carrying,animals
R8757 T12584 T12585 amod recombinant,chromosomes
R8758 T12585 T12583 dobj chromosomes,carrying
R8759 T12586 T12585 prep between,chromosomes
R8760 T12587 T12588 det these,markers
R8761 T12588 T12586 pobj markers,between
R8762 T12589 T12590 poss whose,genotype
R8763 T12590 T12591 dep genotype,was
R8764 T12591 T12581 relcl was,animals
R8765 T12592 T12591 prep at,was
R8766 T12593 T12592 pobj de,at
R8767 T12594 T12591 acomp indeterminate,was
R8768 T12595 T12596 punct (,deH
R8769 T12596 T12591 parataxis deH,was
R8770 T12597 T12596 punct /,deH
R8771 T12598 T12596 punct +,deH
R8772 T12599 T12596 cc or,deH
R8773 T12600 T12601 punct +,+
R8774 T12601 T12596 conj +,deH
R8775 T12602 T12601 punct /,+
R8776 T12603 T12596 punct ),deH
R8777 T12604 T12582 auxpass were,tested
R8778 T12605 T12582 dep progeny,tested
R8779 T12606 T12582 punct -,tested
R8780 T12607 T12582 prep by,tested
R8781 T12608 T12607 pcomp crossing,by
R8782 T12609 T12608 prep to,crossing
R8783 T12610 T12611 compound deH,deH
R8784 T12611 T12613 compound deH,animals
R8785 T12612 T12611 punct /,deH
R8786 T12613 T12609 pobj animals,to
R8787 T12614 T12582 punct .,tested
R8788 T12616 T12617 amod Further,mapping
R8789 T12617 T12619 nsubj mapping,established
R8790 T12618 T12617 amod genetic,mapping
R8791 T12619 T12620 ccomp established,used
R8792 T12621 T12622 det a,region
R8793 T12622 T12619 dobj region,established
R8794 T12623 T12622 amod minimal,region
R8795 T12624 T12622 prep of,region
R8796 T12625 T12626 nummod 0.1,cM
R8797 T12626 T12624 pobj cM,of
R8798 T12627 T12622 prep between,region
R8799 T12628 T12627 pobj D3Mit213,between
R8800 T12629 T12628 cc and,D3Mit213
R8801 T12630 T12628 conj 16.MMHAP32FLF1,D3Mit213
R8802 T12631 T12620 punct ;,used
R8803 T12632 T12633 det these,markers
R8804 T12633 T12620 nsubjpass markers,used
R8805 T12634 T12620 auxpass were,used
R8806 T12635 T12636 aux to,initiate
R8807 T12636 T12620 advcl initiate,used
R8808 T12637 T12636 dobj construction,initiate
R8809 T12638 T12637 prep of,construction
R8810 T12639 T12640 det a,map
R8811 T12640 T12638 pobj map,of
R8812 T12641 T12640 amod physical,map
R8813 T12642 T12637 prep with,construction
R8814 T12643 T12644 nmod BAC,clones
R8815 T12644 T12642 pobj clones,with
R8816 T12645 T12644 amod genomic,clones
R8817 T12646 T12647 punct (,Genetics
R8818 T12647 T12636 parataxis Genetics,initiate
R8819 T12648 T12647 compound Research,Genetics
R8820 T12649 T12647 punct ", ",Genetics
R8821 T12650 T12647 npadvmod Huntsville,Genetics
R8822 T12651 T12647 punct ", ",Genetics
R8823 T12652 T12647 npadvmod Alabama,Genetics
R8824 T12653 T12647 punct ", ",Genetics
R8825 T12654 T12655 compound United,States
R8826 T12655 T12647 npadvmod States,Genetics
R8827 T12656 T12647 punct ", ",Genetics
R8828 T12657 T12647 cc and,Genetics
R8829 T12658 T12659 compound Genome,Systems
R8830 T12659 T12647 conj Systems,Genetics
R8831 T12660 T12659 punct ", ",Systems
R8832 T12661 T12662 compound St.,Louis
R8833 T12662 T12659 npadvmod Louis,Systems
R8834 T12663 T12659 punct ", ",Systems
R8835 T12664 T12659 npadvmod Missouri,Systems
R8836 T12665 T12659 punct ", ",Systems
R8837 T12666 T12667 compound United,States
R8838 T12667 T12659 npadvmod States,Systems
R8839 T12668 T12647 punct ),Genetics
R8840 T12669 T12620 punct .,used
R8841 T12671 T12672 compound End,sequence
R8842 T12672 T12673 nsubjpass sequence,used
R8843 T12674 T12672 prep from,sequence
R8844 T12675 T12676 det those,BACs
R8845 T12676 T12674 pobj BACs,from
R8846 T12677 T12673 auxpass was,used
R8847 T12678 T12679 aux to,develop
R8848 T12679 T12673 advcl develop,used
R8849 T12680 T12681 compound SSCP,markers
R8850 T12681 T12679 dobj markers,develop
R8851 T12682 T12681 appos M1,markers
R8852 T12683 T12682 prep to,M1
R8853 T12684 T12683 pobj M3,to
R8854 T12685 T12679 punct ", ",develop
R8855 T12686 T12687 mark as,depicted
R8856 T12687 T12679 advcl depicted,develop
R8857 T12688 T12687 prep in,depicted
R8858 T12689 T12688 pobj Figure,in
R8859 T12690 T12689 nummod 3,Figure
R8860 T12691 T12679 punct ", ",develop
R8861 T12692 T12679 cc and,develop
R8862 T12693 T12694 aux to,establish
R8863 T12694 T12679 conj establish,develop
R8864 T12695 T12696 det a,interval
R8865 T12696 T12694 dobj interval,establish
R8866 T12697 T12696 amod minimal,interval
R8867 T12698 T12696 amod physical,interval
R8868 T12699 T12696 prep of,interval
R8869 T12700 T12701 nummod 1.4,Mb
R8870 T12701 T12699 pobj Mb,of
R8871 T12702 T12673 punct .,used
R8872 T12704 T12705 compound Primer,pairs
R8873 T12705 T12706 nsubj pairs,were
R8874 T12707 T12705 acl used,pairs
R8875 T12708 T12706 attr TTCCCTCCAATAAGTTCTGGGTACC,were
R8876 T12709 T12708 cc and,TTCCCTCCAATAAGTTCTGGGTACC
R8877 T12710 T12708 conj AAGCTTGCTGCTCTGGATTCCATTTGTAG,TTCCCTCCAATAAGTTCTGGGTACC
R8878 T12711 T12708 prep for,TTCCCTCCAATAAGTTCTGGGTACC
R8879 T12712 T12711 pobj M1,for
R8880 T12713 T12708 punct ", ",TTCCCTCCAATAAGTTCTGGGTACC
R8881 T12714 T12708 conj CCTTCATTTTTTTTTCAAGTAAAA,TTCCCTCCAATAAGTTCTGGGTACC
R8882 T12715 T12714 cc and,CCTTCATTTTTTTTTCAAGTAAAA
R8883 T12716 T12714 conj AAGCTTGGCTTAGTCCCAGTGGC,CCTTCATTTTTTTTTCAAGTAAAA
R8884 T12717 T12714 prep for,CCTTCATTTTTTTTTCAAGTAAAA
R8885 T12718 T12717 pobj M2,for
R8886 T12719 T12714 punct ", ",CCTTCATTTTTTTTTCAAGTAAAA
R8887 T12720 T12714 conj CCTCCAGGAAGATCTACTAGGCAC,CCTTCATTTTTTTTTCAAGTAAAA
R8888 T12721 T12720 cc and,CCTCCAGGAAGATCTACTAGGCAC
R8889 T12722 T12720 conj ATGGAAAAAAAAAAGTAAGATTGAAAG,CCTCCAGGAAGATCTACTAGGCAC
R8890 T12723 T12720 prep for,CCTCCAGGAAGATCTACTAGGCAC
R8891 T12724 T12723 pobj M3,for
R8892 T12725 T12720 punct ", ",CCTCCAGGAAGATCTACTAGGCAC
R8893 T12726 T12720 cc and,CCTCCAGGAAGATCTACTAGGCAC
R8894 T12727 T12720 conj TGGTTATCGATCTGTGGACCATTC,CCTCCAGGAAGATCTACTAGGCAC
R8895 T12728 T12727 cc and,TGGTTATCGATCTGTGGACCATTC
R8896 T12729 T12727 conj AAGTGAGAGAGCAGGATGGACCAC,TGGTTATCGATCTGTGGACCATTC
R8897 T12730 T12727 prep for,TGGTTATCGATCTGTGGACCATTC
R8898 T12731 T12730 pobj M4,for
R8899 T12732 T12733 punct (,represents
R8900 T12733 T12731 parataxis represents,M4
R8901 T12734 T12735 det the,marker
R8902 T12735 T12733 nsubj marker,represents
R8903 T12736 T12735 compound M4,marker
R8904 T12737 T12738 compound STS,16.MMHAP32FLF1
R8905 T12738 T12733 dobj 16.MMHAP32FLF1,represents
R8906 T12739 T12733 punct ),represents
R8907 T12740 T12706 punct .,were
R8908 T12742 T12743 amod Genomic,sequence
R8909 T12743 T12744 nsubjpass sequence,obtained
R8910 T12744 T12748 ccomp obtained,contains
R8911 T12745 T12743 cc and,sequence
R8912 T12746 T12743 conj annotations,sequence
R8913 T12747 T12744 auxpass were,obtained
R8914 T12749 T12744 prep from,obtained
R8915 T12750 T12751 det the,Browser
R8916 T12751 T12754 nmod Browser,mm3
R8917 T12752 T12751 nmod UCSC,Browser
R8918 T12753 T12751 nmod Genome,Browser
R8919 T12754 T12749 pobj mm3,from
R8920 T12755 T12756 nmod February,assembly
R8921 T12756 T12754 compound assembly,mm3
R8922 T12757 T12755 nummod 2003,February
R8923 T12758 T12754 compound version,mm3
R8924 T12759 T12760 punct (,http://genome.ucsc.edu
R8925 T12760 T12754 parataxis http://genome.ucsc.edu,mm3
R8926 T12761 T12760 punct ),http://genome.ucsc.edu
R8927 T12762 T12748 punct ;,contains
R8928 T12763 T12764 det the,interval
R8929 T12764 T12748 nsubj interval,contains
R8930 T12765 T12766 nummod 1.4,Mb
R8931 T12766 T12764 compound Mb,interval
R8932 T12767 T12764 prep between,interval
R8933 T12768 T12767 pobj M1,between
R8934 T12769 T12768 cc and,M1
R8935 T12770 T12768 conj M4,M1
R8936 T12771 T12772 nummod eight,genes
R8937 T12772 T12748 dobj genes,contains
R8938 T12773 T12772 punct : ,genes
R8939 T12774 T12775 nummod four,isomerases
R8940 T12775 T12772 appos isomerases,genes
R8941 T12776 T12775 compound hydroxysteroid,isomerases
R8942 T12777 T12775 compound dehydrogenase,isomerases
R8943 T12778 T12775 punct ", ",isomerases
R8944 T12779 T12775 appos Hsd3b3,isomerases
R8945 T12780 T12779 punct ", ",Hsd3b3
R8946 T12781 T12779 conj Hsd3b2,Hsd3b3
R8947 T12782 T12781 punct ", ",Hsd3b2
R8948 T12783 T12781 conj Hsd3b6,Hsd3b2
R8949 T12784 T12783 punct ", ",Hsd3b6
R8950 T12785 T12783 cc and,Hsd3b6
R8951 T12786 T12783 conj Hsd3b1,Hsd3b6
R8952 T12787 T12775 punct ;,isomerases
R8953 T12788 T12789 det an,oxidase
R8954 T12789 T12775 conj oxidase,isomerases
R8955 T12790 T12789 compound hydroacid,oxidase
R8956 T12791 T12789 punct ", ",oxidase
R8957 T12792 T12789 appos Hao3,oxidase
R8958 T12793 T12789 punct ;,oxidase
R8959 T12794 T12795 det a,synthetase
R8960 T12795 T12789 conj synthetase,oxidase
R8961 T12796 T12797 compound tryptophanyl,tRNA
R8962 T12797 T12795 compound tRNA,synthetase
R8963 T12798 T12797 punct -,tRNA
R8964 T12799 T12795 punct ", ",synthetase
R8965 T12800 T12795 appos Wars2,synthetase
R8966 T12801 T12795 punct ;,synthetase
R8967 T12802 T12803 det a,gene
R8968 T12803 T12795 conj gene,synthetase
R8969 T12804 T12805 compound T,box
R8970 T12805 T12803 compound box,gene
R8971 T12806 T12805 punct -,box
R8972 T12807 T12803 punct ", ",gene
R8973 T12808 T12803 appos Tbx15,gene
R8974 T12809 T12803 punct ;,gene
R8975 T12810 T12803 cc and,gene
R8976 T12811 T12812 det a,gene
R8977 T12812 T12803 conj gene,gene
R8978 T12813 T12812 amod novel,gene
R8979 T12814 T12812 punct ", ",gene
R8980 T12815 T12812 appos 4931427F14Rik,gene
R8981 T12816 T12748 punct .,contains
R8982 T12818 T12819 prep In,correspond
R8983 T12820 T12821 det the,sequence
R8984 T12821 T12818 pobj sequence,In
R8985 T12822 T12821 compound genome,sequence
R8986 T12823 T12819 punct ", ",correspond
R8987 T12824 T12825 compound M1,primers
R8988 T12825 T12819 nsubj primers,correspond
R8989 T12826 T12819 prep to,correspond
R8990 T12827 T12826 pobj AGGCCTCCAATAAGTTCTGGGTACC,to
R8991 T12828 T12827 cc and,AGGCCTCCAATAAGTTCTGGGTACC
R8992 T12829 T12827 conj AAGCTTGCTCTCTGGATTCCATTTGTAG,AGGCCTCCAATAAGTTCTGGGTACC
R8993 T12830 T12819 punct ", ",correspond
R8994 T12831 T12832 det the,primer
R8995 T12832 T12835 nsubj primer,corresponds
R8996 T12833 T12832 nmod M2,primer
R8997 T12834 T12832 amod reverse,primer
R8998 T12835 T12819 conj corresponds,correspond
R8999 T12836 T12835 prep to,corresponds
R9000 T12837 T12836 pobj AAGCTTGGCTTTAGTCCCAGTGGGC,to
R9001 T12838 T12835 punct ", ",corresponds
R9002 T12839 T12835 cc and,corresponds
R9003 T12840 T12841 det the,primers
R9004 T12841 T12843 nsubj primers,correspond
R9005 T12842 T12841 compound M3,primers
R9006 T12843 T12835 conj correspond,corresponds
R9007 T12844 T12843 prep to,correspond
R9008 T12845 T12844 pobj CCTCCAGGAAGAATCTACTAGGCAC,to
R9009 T12846 T12845 cc and,CCTCCAGGAAGAATCTACTAGGCAC
R9010 T12847 T12845 conj AATGAAAAAAAAAAAAGTAAGATTGAAAG,CCTCCAGGAAGAATCTACTAGGCAC
R9011 T12848 T12819 punct .,correspond
R9012 T12850 T12851 amod Minor,differences
R9013 T12851 T12852 nsubj differences,represent
R9014 T12853 T12851 prep among,differences
R9015 T12854 T12855 det the,sequences
R9016 T12855 T12853 pobj sequences,among
R9017 T12856 T12855 prep of,sequences
R9018 T12857 T12858 det the,primers
R9019 T12858 T12856 pobj primers,of
R9020 T12859 T12860 nsubj we,obtained
R9021 T12860 T12858 advcl obtained,primers
R9022 T12861 T12860 prep from,obtained
R9023 T12862 T12863 det the,BAC
R9024 T12863 T12861 pobj BAC,from
R9025 T12864 T12863 nmod ends,BAC
R9026 T12865 T12855 cc and,sequences
R9027 T12866 T12867 det the,sequence
R9028 T12867 T12855 conj sequence,sequences
R9029 T12868 T12867 amod public,sequence
R9030 T12869 T12867 compound genome,sequence
R9031 T12870 T12852 aux may,represent
R9032 T12871 T12872 compound strain,differences
R9033 T12872 T12852 dobj differences,represent
R9034 T12873 T12872 cc or,differences
R9035 T12874 T12875 compound sequencing,errors
R9036 T12875 T12872 conj errors,differences
R9037 T12876 T12875 prep on,errors
R9038 T12877 T12878 det the,DNA
R9039 T12878 T12876 pobj DNA,on
R9040 T12879 T12878 compound BAC,DNA
R9041 T12880 T12852 punct .,represent
R9042 T12882 T12883 det A,assay
R9043 T12883 T12886 nsubjpass assay,developed
R9044 T12884 T12883 amod multiplex,assay
R9045 T12885 T12883 amod genotyping,assay
R9046 T12887 T12886 auxpass was,developed
R9047 T12888 T12889 aux to,genotype
R9048 T12889 T12886 advcl genotype,developed
R9049 T12890 T12889 prep for,genotype
R9050 T12891 T12892 det the,deletion
R9051 T12892 T12890 pobj deletion,for
R9052 T12893 T12892 compound deH,deletion
R9053 T12894 T12889 advcl using,genotype
R9054 T12895 T12896 compound primers,GGAGCAGATCCAATTGCTTT
R9055 T12896 T12894 dobj GGAGCAGATCCAATTGCTTT,using
R9056 T12897 T12896 punct ", ",GGAGCAGATCCAATTGCTTT
R9057 T12898 T12896 conj TCCATAGCCCATCTTCACAA,GGAGCAGATCCAATTGCTTT
R9058 T12899 T12898 punct ", ",TCCATAGCCCATCTTCACAA
R9059 T12900 T12898 cc and,TCCATAGCCCATCTTCACAA
R9060 T12901 T12898 conj CATGTCCACTTCTGCTTCCA,TCCATAGCCCATCTTCACAA
R9061 T12902 T12886 punct .,developed
R9062 T12904 T12905 det This,assay
R9063 T12905 T12907 nsubj assay,produces
R9064 T12906 T12905 compound PCR,assay
R9065 T12908 T12909 det a,product
R9066 T12909 T12907 dobj product,produces
R9067 T12910 T12911 nummod 392,bp
R9068 T12911 T12909 compound bp,product
R9069 T12912 T12907 prep from,produces
R9070 T12913 T12914 det the,chromosome
R9071 T12914 T12912 pobj chromosome,from
R9072 T12915 T12914 compound deH,chromosome
R9073 T12916 T12907 cc and,produces
R9074 T12917 T12918 det a,product
R9075 T12918 T12907 conj product,produces
R9076 T12919 T12920 nummod 595,bp
R9077 T12920 T12918 compound bp,product
R9078 T12921 T12918 prep from,product
R9079 T12922 T12923 det the,chromosome
R9080 T12923 T12921 pobj chromosome,from
R9081 T12924 T12923 amod nonmutant,chromosome
R9082 T12925 T12907 punct .,produces

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12434 127-131 NCBITaxon:10088 denotes mice
T12435 212-219 NCBITaxon:33208 denotes animals
T12436 372-379 NCBITaxon:33208 denotes animals
T12437 389-396 SO:0000704 denotes genetic
T12438 535-547 SO:0001249 denotes physical map
T12439 553-556 SO:0000153 denotes BAC
T12440 557-571 SO:0000040 denotes genomic clones
T12441 632-638 SO:0001026 denotes Genome
T12442 709-713 SO:0000153 denotes BACs
T12443 838-844 SO:0000112 denotes Primer
T12444 1146-1149 SO:0000331 denotes STS
T12445 1167-1174 SO:0001026 denotes Genomic
T12446 1228-1234 SO:0001026 denotes Genome
T12447 1286-1292 SO:0001026 denotes genome
T12448 1357-1362 SO:0000704 denotes genes
T12449 1369-1383 CHEBI:35350 denotes hydroxysteroid
T12450 1410-1416 PR:000008867 denotes Hsd3b3
T12451 1418-1424 PR:000008786 denotes Hsd3b2
T12452 1426-1432 PR:000008870 denotes Hsd3b6
T12453 1438-1444 PR:000008785 denotes Hsd3b1
T12454 1449-1458 CHEBI:24669 denotes hydroacid
T12455 1468-1472 PR:000008442 denotes Hao3
T12456 1506-1511 PR:000017370 denotes Wars2
T12457 1521-1525 SO:0000704 denotes gene
T12458 1527-1532 PR:000016145 denotes Tbx15
T12459 1546-1550 SO:0000704 denotes gene
T12460 1552-1565 PR:000015456 denotes 4931427F14Rik
T12461 1574-1580 SO:0001026 denotes genome
T12462 1594-1601 SO:0000112 denotes primers
T12463 1683-1697 SO:0000132 denotes reverse primer
T12464 1751-1758 SO:0000112 denotes primers
T12465 1879-1886 SO:0000112 denotes primers
T12466 1908-1916 SO:0000999 denotes BAC ends
T12467 1932-1938 SO:0001026 denotes genome
T12468 2009-2012 SO:0000153 denotes BAC
T12469 2100-2107 SO:0000112 denotes primers
T12470 2208-2210 SO:0000028 denotes bp
T12471 2253-2255 SO:0000028 denotes bp

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12472 11-18 SO_EXT:sequence_cloning_process denotes cloning
T12473 127-131 NCBITaxon:10088 denotes mice
T12474 212-219 NCBITaxon:33208 denotes animals
T12475 229-240 GO_SO_EXT:sequence_rearrangement_process denotes recombinant
T12476 241-252 GO_SO_EXT:chromosome denotes chromosomes
T12477 267-274 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes markers
T12478 281-289 SO_EXT:genotype_or_entity_with_genotype denotes genotype
T12479 319-320 SO_EXT:normal_or_wild_type_or_present denotes +
T12480 324-325 SO_EXT:normal_or_wild_type_or_present denotes +
T12481 326-327 SO_EXT:normal_or_wild_type_or_present denotes +
T12482 372-379 NCBITaxon:33208 denotes animals
T12483 389-396 SO_EXT:0000704 denotes genetic
T12484 487-494 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes markers
T12485 535-547 SO_EXT:0001249 denotes physical map
T12486 553-556 SO_EXT:0000153 denotes BAC
T12487 557-571 SO_EXT:0000040 denotes genomic clones
T12488 582-590 OBI_SO_EXT:gene_or_genetic_investigation_or_genetic_process denotes Genetics
T12489 632-638 SO_EXT:0001026 denotes Genome
T12490 689-697 SO_EXT:biological_sequence denotes sequence
T12491 709-713 SO_EXT:0000153 denotes BACs
T12492 739-746 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes markers
T12493 835-836 CHEBI_SO_EXT:base denotes b
T12494 838-844 SO_EXT:0000112 denotes Primer
T12495 1128-1134 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T12496 1146-1149 SO_EXT:0000331 denotes STS
T12497 1167-1174 SO_EXT:0001026 denotes Genomic
T12498 1175-1183 SO_EXT:biological_sequence denotes sequence
T12499 1228-1234 SO_EXT:0001026 denotes Genome
T12500 1257-1265 SO_EXT:sequence_assembly_entity_or_process denotes assembly
T12501 1286-1292 SO_EXT:0001026 denotes genome
T12502 1313-1314 CHEBI_SO_EXT:base denotes b
T12503 1357-1362 SO_EXT:0000704 denotes genes
T12504 1369-1383 CHEBI:35350 denotes hydroxysteroid
T12505 1398-1408 GO_EXT:0016853 denotes isomerases
T12506 1410-1416 PR_EXT:000008867 denotes Hsd3b3
T12507 1418-1424 PR_EXT:000008786 denotes Hsd3b2
T12508 1426-1432 PR_EXT:000008870 denotes Hsd3b6
T12509 1438-1444 PR_EXT:000008785 denotes Hsd3b1
T12510 1449-1458 CHEBI:24669 denotes hydroacid
T12511 1468-1472 PR_EXT:000008442 denotes Hao3
T12512 1476-1493 CHEBI_SO_EXT:tRNA_Trp denotes tryptophanyl-tRNA
T12513 1476-1504 GO_EXT:0004830 denotes tryptophanyl-tRNA synthetase
T12514 1506-1511 PR_EXT:000017370 denotes Wars2
T12515 1521-1525 SO_EXT:0000704 denotes gene
T12516 1527-1532 PR_EXT:000016145 denotes Tbx15
T12517 1546-1550 SO_EXT:0000704 denotes gene
T12518 1552-1565 PR_EXT:000015456 denotes 4931427F14Rik
T12519 1574-1580 SO_EXT:0001026 denotes genome
T12520 1581-1589 SO_EXT:biological_sequence denotes sequence
T12521 1594-1601 SO_EXT:0000112 denotes primers
T12522 1683-1697 SO_EXT:0000132 denotes reverse primer
T12523 1751-1758 SO_EXT:0000112 denotes primers
T12524 1862-1871 SO_EXT:biological_sequence denotes sequences
T12525 1879-1886 SO_EXT:0000112 denotes primers
T12526 1908-1916 SO_EXT:0000999 denotes BAC ends
T12527 1932-1938 SO_EXT:0001026 denotes genome
T12528 1939-1947 SO_EXT:biological_sequence denotes sequence
T12529 2009-2012 SO_EXT:0000153 denotes BAC
T12530 2013-2016 CHEBI_SO_EXT:DNA denotes DNA
T12531 2085-2093 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T12532 2100-2107 SO_EXT:0000112 denotes primers
T12533 2208-2210 SO_EXT:0000028 denotes bp
T12534 2232-2242 GO_SO_EXT:chromosome denotes chromosome
T12535 2253-2255 SO_EXT:0000028 denotes bp
T12536 2276-2282 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T12537 2283-2293 GO_SO_EXT:chromosome denotes chromosome