PMC:3091644 / 41216-41944 JSONTXT

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/3091644","sourcedb":"PMC","sourceid":"3091644","source_url":"https://www.ncbi.nlm.nih.gov/pmc/3091644","text":"Sliding window analysis of nucleotide variation\nThe complete alignment of nucleotides of the 7 Taenia mtDNAs was used to effect sliding window analyses using DnaSP v.5 [64]. A sliding window of 300 bp and steps of 10 bp was used to estimate nucleotide diversity (π) for the entire alignment. Nucleotide diversity for the entire alignments was plotted against midpoint positions of each window, and gene boundaries indicated. PAUP* v. 4.0b10 [79] was used to determine the position of phylogenetically informative positions under the principle of parsimony, and the sum of these sites was calculated using a sliding window approach with the same parameters (window size = 300 bp; step size = 10 bp) and plotted on the same graph.","divisions":[{"label":"title","span":{"begin":0,"end":47}}],"tracks":[{"project":"2_test","denotations":[{"id":"20649981-14668244-10705729","span":{"begin":169,"end":171},"obj":"14668244"}],"attributes":[{"subj":"20649981-14668244-10705729","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"2_test","color":"#93ecd6","default":true}]}]}}