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{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/3091641","sourcedb":"PMC","sourceid":"3091641","source_url":"https://www.ncbi.nlm.nih.gov/pmc/3091641","text":"For progressive alignment, note that the posterior assembly pmf and the cost are composed from the individual sequential alignments. Suppose we first align traces 1 and 2 to obtain assembly 4, and then align trace 3 to assembly 4 to produce assembly 5 as shown in figure 2. We need to refine our notation for indexing by letting refer to the position in trace i corresponding to position k in assembly a. So, for the example of figure 2, we have\nFigure 2 Diagram indicating the labeling of traces and assemblies for the discussion of progressive alignment in the text.","divisions":[{"label":"label","span":{"begin":446,"end":454}}],"tracks":[]}