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PMC:3062687 / 6403-6586 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3854 54-58 P23396 denotes RPS3
T3855 79-83 O14920 denotes IKKβ
T3856 120-124 O14920 denotes IKKβ

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3777 0-3 DT denotes The
T3778 4-14 NN denotes percentage
T3779 15-17 IN denotes of
T3780 18-23 NN denotes cells
T3781 24-34 VB denotes containing
T3782 35-45 JJ denotes detectable
T3783 46-53 JJ denotes nuclear
T3784 54-58 NN denotes RPS3
T3785 59-68 VB denotes increased
T3786 69-75 RB denotes 5-fold
T3787 76-78 IN denotes in
T3788 79-83 NN denotes IKKβ
T3789 84-85 -LRB- denotes (
T3790 85-89 NN denotes SSEE
T3791 89-90 -RRB- denotes )
T3792 90-101 JJ denotes -expressing
T3793 102-107 NN denotes cells
T3794 107-108 -COMMA- denotes ,
T3795 109-112 CC denotes but
T3796 113-116 RB denotes not
T3797 117-119 IN denotes in
T3798 120-124 NN denotes IKKβ
T3799 125-126 -LRB- denotes (
T3800 126-130 NN denotes SSAA
T3801 130-131 -RRB- denotes )
T3802 131-142 JJ denotes -expressing
T3803 143-147 NN denotes ones
T3804 148-149 -LRB- denotes (
T3805 149-153 NNP denotes Fig.
T3806 154-156 CD denotes 2d
T3807 157-160 CC denotes and
T3808 161-174 NNP denotes Supplementary
T3809 175-179 NNP denotes Fig.
T3810 180-181 CD denotes 2
T3811 181-182 -RRB- denotes )
R2996 T3778 T3777 arg1Of percentage,The
R2997 T3778 T3779 arg1Of percentage,of
R2998 T3778 T3785 arg1Of percentage,increased
R2999 T3780 T3779 arg2Of cells,of
R3000 T3780 T3781 arg1Of cells,containing
R3001 T3784 T3781 arg2Of RPS3,containing
R3002 T3784 T3782 arg1Of RPS3,detectable
R3003 T3784 T3783 arg1Of RPS3,nuclear
R3004 T3785 T3786 arg1Of increased,5-fold
R3005 T3785 T3787 arg1Of increased,in
R3006 T3785 T3797 arg1Of increased,in
R3007 T3785 T3804 arg1Of increased,(
R3008 T3787 T3795 arg1Of in,but
R3009 T3790 T3789 arg2Of SSEE,(
R3010 T3791 T3789 arg3Of ),(
R3011 T3793 T3787 arg2Of cells,in
R3012 T3793 T3788 arg1Of cells,IKKβ
R3013 T3793 T3789 arg1Of cells,(
R3014 T3793 T3792 arg1Of cells,-expressing
R3015 T3795 T3794 arg1Of but,","
R3016 T3797 T3795 arg2Of in,but
R3017 T3797 T3796 arg1Of in,not
R3018 T3800 T3799 arg2Of SSAA,(
R3019 T3801 T3799 arg3Of ),(
R3020 T3803 T3797 arg2Of ones,in
R3021 T3803 T3798 arg1Of ones,IKKβ
R3022 T3803 T3799 arg1Of ones,(
R3023 T3803 T3802 arg1Of ones,-expressing
R3024 T3805 T3806 arg1Of Fig.,2d
R3025 T3805 T3807 arg1Of Fig.,and
R3026 T3807 T3804 arg2Of and,(
R3027 T3809 T3807 arg2Of Fig.,and
R3028 T3809 T3808 arg1Of Fig.,Supplementary
R3029 T3809 T3810 arg1Of Fig.,2
R3030 T3811 T3804 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4102 0-3 DT denotes The
T4103 4-14 NN denotes percentage
T4104 15-17 IN denotes of
T4105 18-23 NNS denotes cells
T4106 24-34 VBG denotes containing
T4107 35-45 JJ denotes detectable
T4108 46-53 JJ denotes nuclear
T4109 54-58 NN denotes RPS3
T4110 59-68 VBD denotes increased
T4111 69-75 JJ denotes 5-fold
T4112 76-78 IN denotes in
T4113 79-83 NNP denotes IKKβ
T4114 84-85 -LRB- denotes (
T4115 85-89 NNP denotes SSEE
T4116 89-90 -RRB- denotes )
T4117 90-91 : denotes -
T4118 91-101 VBG denotes expressing
T4119 102-107 NNS denotes cells
T4120 107-108 , denotes ,
T4121 109-112 CC denotes but
T4122 113-116 RB denotes not
T4123 117-119 IN denotes in
T4124 120-124 NNP denotes IKKβ
T4125 125-126 -LRB- denotes (
T4126 126-130 NNP denotes SSAA
T4127 130-131 -RRB- denotes )
T4128 131-132 : denotes -
T4129 132-142 VBG denotes expressing
T4130 143-147 NNS denotes ones
T4131 148-149 -LRB- denotes (
T4132 149-153 NNP denotes Fig.
T4133 154-156 CD denotes 2d
T4134 157-160 CC denotes and
T4135 161-174 NNP denotes Supplementary
T4136 175-179 NNP denotes Fig.
T4137 180-181 CD denotes 2
T4138 181-182 -RRB- denotes )
T4139 182-183 . denotes .
R3293 T4102 T4103 det The,percentage
R3294 T4103 T4110 nsubj percentage,increased
R3295 T4104 T4103 prep of,percentage
R3296 T4105 T4104 pobj cells,of
R3297 T4106 T4105 acl containing,cells
R3298 T4107 T4109 amod detectable,RPS3
R3299 T4108 T4109 amod nuclear,RPS3
R3300 T4109 T4106 dobj RPS3,containing
R3301 T4110 T4110 ROOT increased,increased
R3302 T4111 T4110 dobj 5-fold,increased
R3303 T4112 T4110 prep in,increased
R3304 T4113 T4112 pobj IKKβ,in
R3305 T4114 T4113 punct (,IKKβ
R3306 T4115 T4113 appos SSEE,IKKβ
R3307 T4116 T4113 punct ),IKKβ
R3308 T4117 T4110 punct -,increased
R3309 T4118 T4110 advcl expressing,increased
R3310 T4119 T4118 dobj cells,expressing
R3311 T4120 T4110 punct ",",increased
R3312 T4121 T4110 cc but,increased
R3313 T4122 T4123 neg not,in
R3314 T4123 T4129 prep in,expressing
R3315 T4124 T4123 pobj IKKβ,in
R3316 T4125 T4124 punct (,IKKβ
R3317 T4126 T4124 appos SSAA,IKKβ
R3318 T4127 T4124 punct ),IKKβ
R3319 T4128 T4129 punct -,expressing
R3320 T4129 T4110 conj expressing,increased
R3321 T4130 T4129 dobj ones,expressing
R3322 T4131 T4129 punct (,expressing
R3323 T4132 T4133 compound Fig.,2d
R3324 T4133 T4129 npadvmod 2d,expressing
R3325 T4134 T4129 cc and,expressing
R3326 T4135 T4136 compound Supplementary,Fig.
R3327 T4136 T4129 conj Fig.,expressing
R3328 T4137 T4136 nummod 2,Fig.
R3329 T4138 T4136 punct ),Fig.
R3330 T4139 T4110 punct .,increased

GO-CC

Id Subject Object Predicate Lexical cue
T4271 18-23 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T4272 102-107 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T3542 0-183 Sentence denotes The percentage of cells containing detectable nuclear RPS3 increased 5-fold in IKKβ (SSEE)-expressing cells, but not in IKKβ (SSAA)-expressing ones (Fig. 2d and Supplementary Fig. 2).
T48 0-183 Sentence denotes The percentage of cells containing detectable nuclear RPS3 increased 5-fold in IKKβ (SSEE)-expressing cells, but not in IKKβ (SSAA)-expressing ones (Fig. 2d and Supplementary Fig. 2).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T4690 46-53 Entity denotes nuclear
T4691 54-58 Protein denotes RPS3
T4692 59-68 Positive_regulation denotes increased true
T4693 59-68 Positive_regulation denotes increased true
T4694 79-83 Protein denotes IKKβ
T4695 85-89 Positive_regulation denotes SSEE
T4696 120-124 Protein denotes IKKβ
T4697 126-130 Negative_regulation denotes SSAA
T4689 35-45 Localization denotes detectable
R3715 T4689 T4693 themeOf detectable,increased
R3717 T4689 T4692 themeOf detectable,increased
R3719 T4690 T4689 locationOf nuclear,detectable
R3720 T4691 T4689 themeOf RPS3,detectable
R3722 T4694 T4695 themeOf IKKβ,SSEE
R3723 T4695 T4693 causeOf SSEE,increased
R3724 T4696 T4697 themeOf IKKβ,SSAA
R3725 T4697 T4692 causeOf SSAA,increased

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4345 79-83 Protein denotes IKKβ
T4346 85-89 Protein denotes SSEE
T4347 120-124 Protein denotes IKKβ
T4348 90-101 Gene_expression denotes -expressing
T4349 90-101 Gene_expression denotes -expressing
T4350 131-142 Gene_expression denotes -expressing
T4351 59-68 Positive_regulation denotes increased
R3475 T4345 T4348 themeOf IKKβ,-expressing
R3476 T4346 T4349 themeOf SSEE,-expressing
R3477 T4347 T4350 themeOf IKKβ,-expressing
R3478 T4350 T4351 themeOf -expressing,increased

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T3517 35-45 Localization denotes detectable
T3518 46-53 Entity denotes nuclear
T3519 54-58 Protein denotes RPS3
T3520 59-68 Positive_regulation denotes increased true
T3521 59-68 Positive_regulation denotes increased true
T3522 79-83 Protein denotes IKKβ
T3523 85-89 Positive_regulation denotes SSEE
T3524 120-124 Protein denotes IKKβ
T3525 126-130 Negative_regulation denotes SSAA
R2753 T3517 T3521 themeOf detectable,increased
R2754 T3517 T3520 themeOf detectable,increased
R2755 T3518 T3517 locationOf nuclear,detectable
R2756 T3519 T3517 themeOf RPS3,detectable
R2757 T3522 T3523 themeOf IKKβ,SSEE
R2758 T3523 T3521 causeOf SSEE,increased
R2759 T3524 T3525 themeOf IKKβ,SSAA
R2760 T3525 T3520 causeOf SSAA,increased

test2

Id Subject Object Predicate Lexical cue
T3424 54-58 Protein denotes RPS3
T3425 59-68 Positive_regulation denotes increased
T3426 79-83 Protein denotes IKKβ
T3427 91-101 Gene_expression denotes expressing
T3428 120-124 Protein denotes IKKβ
T3429 126-130 Negative_regulation denotes SSAA
T3430 132-142 Gene_expression denotes expressing
R2677 T3424 T3425 themeOf RPS3,increased
R2678 T3426 T3427 themeOf IKKβ,expressing
R2679 T3428 T3430 themeOf IKKβ,expressing
R2680 T3428 T3429 themeOf IKKβ,SSAA