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PMC:3062687 / 592-807 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T247 34-38 P23396 denotes RPS3
T248 179-183 O14920 denotes IKKβ

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T189 1-5 NN denotes S209
T190 6-21 NN denotes phosphorylation
T191 22-25 CC denotes and
T192 26-33 VB denotes blocked
T193 34-38 NN denotes RPS3
T194 39-47 NN denotes function
T195 47-48 -COMMA- denotes ,
T196 49-56 RB denotes thereby
T197 57-66 VB denotes promoting
T198 67-76 JJ denotes bacterial
T199 77-89 NN denotes colonization
T200 90-93 CC denotes and
T201 94-102 NN denotes diarrhea
T202 103-106 CC denotes but
T203 107-117 VB denotes decreasing
T204 118-127 NN denotes mortality
T205 128-130 IN denotes in
T206 131-132 DT denotes a
T207 133-144 JJ denotes gnotobiotic
T208 145-151 NN denotes piglet
T209 152-161 NN denotes infection
T210 162-167 NN denotes model
T211 169-173 RB denotes Thus
T212 173-174 -COMMA- denotes ,
T213 175-178 DT denotes the
T214 179-193 JJ denotes IKKβ-dependent
T215 194-206 NN denotes modification
T216 207-209 IN denotes of
T217 210-211 DT denotes a
R167 T190 T189 arg1Of phosphorylation,S209
R171 T191 T195 arg1Of and,","
R172 T191 T197 modOf and,promoting
R173 T191 T203 modOf and,decreasing
R174 T192 T191 arg2Of blocked,and
R175 T194 T192 arg2Of function,blocked
R176 T194 T193 arg1Of function,RPS3
R177 T197 T202 arg1Of promoting,but
R178 T199 T200 arg1Of colonization,and
R179 T200 T197 arg2Of and,promoting
R180 T200 T198 arg1Of and,bacterial
R181 T201 T200 arg2Of diarrhea,and
R182 T202 T196 arg1Of but,thereby
R183 T203 T202 arg2Of decreasing,but
R184 T203 T205 arg1Of decreasing,in
R185 T204 T203 arg2Of mortality,decreasing
R186 T210 T205 arg2Of model,in
R187 T210 T206 arg1Of model,a
R188 T210 T207 arg1Of model,gnotobiotic
R189 T210 T208 arg1Of model,piglet
R190 T210 T209 arg1Of model,infection
R191 T215 T213 arg1Of modification,the
R192 T215 T214 arg1Of modification,IKKβ-dependent
R193 T215 T216 arg1Of modification,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T342 1-5 NNP denotes S209
T343 6-21 NN denotes phosphorylation
T344 22-25 CC denotes and
T345 26-33 VBD denotes blocked
T346 34-38 CD denotes RPS3
T347 39-47 NN denotes function
T348 47-48 , denotes ,
T349 49-56 RB denotes thereby
T350 57-66 VBG denotes promoting
T351 67-76 JJ denotes bacterial
T352 77-89 NN denotes colonization
T353 90-93 CC denotes and
T354 94-102 NN denotes diarrhea
T355 103-106 CC denotes but
T356 107-117 VBG denotes decreasing
T357 118-127 NN denotes mortality
T358 128-130 IN denotes in
T359 131-132 DT denotes a
T360 133-144 JJ denotes gnotobiotic
T361 145-151 NN denotes piglet
T362 152-161 NN denotes infection
T363 162-167 NN denotes model
T364 167-168 . denotes .
T365 169-173 RB denotes Thus
T366 173-174 , denotes ,
T367 175-178 DT denotes the
T368 179-193 JJ denotes IKKβ-dependent
T369 194-206 NN denotes modification
T370 207-209 IN denotes of
T371 210-211 DT denotes a
R276 T342 T343 compound S209,phosphorylation
R280 T346 T347 nummod RPS3,function
R281 T347 T345 dobj function,blocked
R282 T348 T345 punct ",",blocked
R283 T349 T350 advmod thereby,promoting
R284 T350 T345 advcl promoting,blocked
R285 T351 T352 amod bacterial,colonization
R286 T352 T350 dobj colonization,promoting
R287 T353 T352 cc and,colonization
R288 T354 T352 conj diarrhea,colonization
R289 T355 T350 cc but,promoting
R290 T356 T350 conj decreasing,promoting
R291 T357 T356 dobj mortality,decreasing
R292 T358 T356 prep in,decreasing
R293 T359 T363 det a,model
R294 T360 T363 amod gnotobiotic,model
R295 T361 T363 compound piglet,model
R296 T362 T363 compound infection,model
R297 T363 T358 pobj model,in
R301 T367 T369 det the,modification
R302 T368 T369 amod IKKβ-dependent,modification
R304 T370 T369 prep of,modification

GO-BP

Id Subject Object Predicate Lexical cue
T434 6-21 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

events-check-again

Id Subject Object Predicate Lexical cue
T586 1-5 Entity denotes S209
T587 6-21 Phosphorylation denotes phosphorylation
T588 26-33 Negative_regulation denotes blocked
T589 34-38 Protein denotes RPS3
T590 179-183 Protein denotes IKKβ
T591 184-193 Regulation denotes dependent
T592 194-206 Protein_modification denotes modification
R459 T586 T587 themeOf S209,phosphorylation
R462 T589 T588 themeOf RPS3,blocked
R463 T590 T591 causeOf IKKβ,dependent
R464 T592 T591 themeOf modification,dependent

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T522 34-38 Protein denotes RPS3
T523 6-21 Phosphorylation denotes phosphorylation
T524 26-33 Negative_regulation denotes blocked
T526 179-183 Protein denotes IKKβ
R409 T522 T524 themeOf RPS3,blocked

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T86 1-5 Entity denotes S209
T87 6-21 Phosphorylation denotes phosphorylation
T88 26-33 Negative_regulation denotes blocked
T89 34-38 Protein denotes RPS3
T90 179-183 Protein denotes IKKβ
T91 184-193 Regulation denotes dependent
T92 194-206 Protein_modification denotes modification
R71 T86 T87 themeOf S209,phosphorylation
R74 T89 T88 themeOf RPS3,blocked
R75 T90 T91 causeOf IKKβ,dependent
R76 T92 T91 themeOf modification,dependent

test2

Id Subject Object Predicate Lexical cue
T56 1-5 Entity denotes S209
T57 6-21 Phosphorylation denotes phosphorylation
T58 26-33 Negative_regulation denotes blocked
T59 34-38 Protein denotes RPS3
T60 179-183 Protein denotes IKKβ
R48 T56 T57 themeOf S209,phosphorylation
R50 T59 T58 themeOf RPS3,blocked