PMC:3062687 / 548-691 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/3062687","sourcedb":"PMC","sourceid":"3062687","source_url":"http://www.ncbi.nlm.nih.gov/pmc/3062687","text":"ce protein NleH1 specifically inhibited RPS3 S209 phosphorylation and blocked RPS3 function, thereby promoting bacterial colonization and diarr","tracks":[{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T245","span":{"begin":11,"end":16},"obj":"P23396"},{"id":"T246","span":{"begin":40,"end":44},"obj":"P23396"},{"id":"T247","span":{"begin":78,"end":82},"obj":"P23396"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"attributes":[{"subj":"T245","pred":"source","obj":"bionlp-st-ge-2016-uniprot"},{"subj":"T246","pred":"source","obj":"bionlp-st-ge-2016-uniprot"},{"subj":"T247","pred":"source","obj":"bionlp-st-ge-2016-uniprot"}]},{"project":"pmc-enju-pas","denotations":[{"id":"T184","span":{"begin":3,"end":10},"obj":"NN"},{"id":"T185","span":{"begin":11,"end":16},"obj":"NN"},{"id":"T186","span":{"begin":17,"end":29},"obj":"RB"},{"id":"T187","span":{"begin":30,"end":39},"obj":"VB"},{"id":"T188","span":{"begin":40,"end":44},"obj":"NN"},{"id":"T189","span":{"begin":45,"end":49},"obj":"NN"},{"id":"T190","span":{"begin":50,"end":65},"obj":"NN"},{"id":"T191","span":{"begin":66,"end":69},"obj":"CC"},{"id":"T192","span":{"begin":70,"end":77},"obj":"VB"},{"id":"T193","span":{"begin":78,"end":82},"obj":"NN"},{"id":"T194","span":{"begin":83,"end":91},"obj":"NN"},{"id":"T195","span":{"begin":91,"end":92},"obj":"-COMMA-"},{"id":"T196","span":{"begin":93,"end":100},"obj":"RB"},{"id":"T197","span":{"begin":101,"end":110},"obj":"VB"},{"id":"T198","span":{"begin":111,"end":120},"obj":"JJ"},{"id":"T199","span":{"begin":121,"end":133},"obj":"NN"},{"id":"T200","span":{"begin":134,"end":137},"obj":"CC"}],"relations":[{"id":"R163","pred":"arg1Of","subj":"T185","obj":"T184"},{"id":"R164","pred":"arg1Of","subj":"T187","obj":"T191"},{"id":"R165","pred":"arg2Of","subj":"T190","obj":"T187"},{"id":"R166","pred":"arg1Of","subj":"T190","obj":"T188"},{"id":"R167","pred":"arg1Of","subj":"T190","obj":"T189"},{"id":"R170","pred":"arg1Of","subj":"T191","obj":"T186"},{"id":"R171","pred":"arg1Of","subj":"T191","obj":"T195"},{"id":"R172","pred":"modOf","subj":"T191","obj":"T197"},{"id":"R174","pred":"arg2Of","subj":"T192","obj":"T191"},{"id":"R175","pred":"arg2Of","subj":"T194","obj":"T192"},{"id":"R176","pred":"arg1Of","subj":"T194","obj":"T193"},{"id":"R178","pred":"arg1Of","subj":"T199","obj":"T200"},{"id":"R179","pred":"arg2Of","subj":"T200","obj":"T197"},{"id":"R180","pred":"arg1Of","subj":"T200","obj":"T198"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"attributes":[{"subj":"T184","pred":"source","obj":"pmc-enju-pas"},{"subj":"T185","pred":"source","obj":"pmc-enju-pas"},{"subj":"T186","pred":"source","obj":"pmc-enju-pas"},{"subj":"T187","pred":"source","obj":"pmc-enju-pas"},{"subj":"T188","pred":"source","obj":"pmc-enju-pas"},{"subj":"T189","pred":"source","obj":"pmc-enju-pas"},{"subj":"T190","pred":"source","obj":"pmc-enju-pas"},{"subj":"T191","pred":"source","obj":"pmc-enju-pas"},{"subj":"T192","pred":"source","obj":"pmc-enju-pas"},{"subj":"T193","pred":"source","obj":"pmc-enju-pas"},{"subj":"T194","pred":"source","obj":"pmc-enju-pas"},{"subj":"T195","pred":"source","obj":"pmc-enju-pas"},{"subj":"T196","pred":"source","obj":"pmc-enju-pas"},{"subj":"T197","pred":"source","obj":"pmc-enju-pas"},{"subj":"T198","pred":"source","obj":"pmc-enju-pas"},{"subj":"T199","pred":"source","obj":"pmc-enju-pas"},{"subj":"T200","pred":"source","obj":"pmc-enju-pas"}]},{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T337","span":{"begin":3,"end":10},"obj":"NN"},{"id":"T338","span":{"begin":11,"end":16},"obj":"NNP"},{"id":"T339","span":{"begin":17,"end":29},"obj":"RB"},{"id":"T340","span":{"begin":30,"end":39},"obj":"VBD"},{"id":"T341","span":{"begin":40,"end":44},"obj":"NNP"},{"id":"T342","span":{"begin":45,"end":49},"obj":"NNP"},{"id":"T343","span":{"begin":50,"end":65},"obj":"NN"},{"id":"T344","span":{"begin":66,"end":69},"obj":"CC"},{"id":"T345","span":{"begin":70,"end":77},"obj":"VBD"},{"id":"T346","span":{"begin":78,"end":82},"obj":"CD"},{"id":"T347","span":{"begin":83,"end":91},"obj":"NN"},{"id":"T348","span":{"begin":91,"end":92},"obj":","},{"id":"T349","span":{"begin":93,"end":100},"obj":"RB"},{"id":"T350","span":{"begin":101,"end":110},"obj":"VBG"},{"id":"T351","span":{"begin":111,"end":120},"obj":"JJ"},{"id":"T352","span":{"begin":121,"end":133},"obj":"NN"},{"id":"T353","span":{"begin":134,"end":137},"obj":"CC"}],"relations":[{"id":"R272","pred":"nsubj","subj":"T338","obj":"T340"},{"id":"R273","pred":"advmod","subj":"T339","obj":"T340"},{"id":"R274","pred":"ROOT","subj":"T340","obj":"T340"},{"id":"R275","pred":"compound","subj":"T341","obj":"T343"},{"id":"R276","pred":"compound","subj":"T342","obj":"T343"},{"id":"R277","pred":"dobj","subj":"T343","obj":"T340"},{"id":"R278","pred":"cc","subj":"T344","obj":"T340"},{"id":"R279","pred":"conj","subj":"T345","obj":"T340"},{"id":"R280","pred":"nummod","subj":"T346","obj":"T347"},{"id":"R281","pred":"dobj","subj":"T347","obj":"T345"},{"id":"R282","pred":"punct","subj":"T348","obj":"T345"},{"id":"R283","pred":"advmod","subj":"T349","obj":"T350"},{"id":"R284","pred":"advcl","subj":"T350","obj":"T345"},{"id":"R285","pred":"amod","subj":"T351","obj":"T352"},{"id":"R286","pred":"dobj","subj":"T352","obj":"T350"},{"id":"R287","pred":"cc","subj":"T353","obj":"T352"}],"attributes":[{"subj":"T337","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T338","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T339","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T340","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T341","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T342","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T343","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T344","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T345","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T346","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T347","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T348","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T349","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T350","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T351","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T352","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T353","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"}]},{"project":"GO-BP","denotations":[{"id":"T434","span":{"begin":50,"end":65},"obj":"http://purl.obolibrary.org/obo/GO_0016310"}],"attributes":[{"subj":"T434","pred":"source","obj":"GO-BP"}]},{"project":"events-check-again","denotations":[{"id":"T583","span":{"begin":11,"end":16},"obj":"Protein"},{"id":"T584","span":{"begin":30,"end":39},"obj":"Negative_regulation"},{"id":"T585","span":{"begin":40,"end":44},"obj":"Protein"},{"id":"T586","span":{"begin":45,"end":49},"obj":"Entity"},{"id":"T587","span":{"begin":50,"end":65},"obj":"Phosphorylation"},{"id":"T588","span":{"begin":70,"end":77},"obj":"Negative_regulation"},{"id":"T589","span":{"begin":78,"end":82},"obj":"Protein"}],"relations":[{"id":"R457","pred":"causeOf","subj":"T583","obj":"T584"},{"id":"R458","pred":"causeOf","subj":"T584","obj":"T588"},{"id":"R459","pred":"themeOf","subj":"T586","obj":"T587"},{"id":"R460","pred":"partOf","subj":"T586","obj":"T585"},{"id":"R461","pred":"themeOf","subj":"T587","obj":"T584"},{"id":"R462","pred":"themeOf","subj":"T589","obj":"T588"}],"attributes":[{"subj":"T583","pred":"source","obj":"events-check-again"},{"subj":"T584","pred":"source","obj":"events-check-again"},{"subj":"T585","pred":"source","obj":"events-check-again"},{"subj":"T586","pred":"source","obj":"events-check-again"},{"subj":"T587","pred":"source","obj":"events-check-again"},{"subj":"T588","pred":"source","obj":"events-check-again"},{"subj":"T589","pred":"source","obj":"events-check-again"}]},{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T520","span":{"begin":11,"end":16},"obj":"Protein"},{"id":"T521","span":{"begin":40,"end":49},"obj":"Protein"},{"id":"T522","span":{"begin":78,"end":82},"obj":"Protein"},{"id":"T523","span":{"begin":50,"end":65},"obj":"Phosphorylation"},{"id":"T524","span":{"begin":70,"end":77},"obj":"Negative_regulation"},{"id":"T525","span":{"begin":30,"end":39},"obj":"Negative_regulation"}],"relations":[{"id":"R408","pred":"themeOf","subj":"T521","obj":"T523"},{"id":"R409","pred":"themeOf","subj":"T522","obj":"T524"},{"id":"R410","pred":"themeOf","subj":"T523","obj":"T525"}],"attributes":[{"subj":"T520","pred":"source","obj":"bionlp-st-ge-2016-reference-tees"},{"subj":"T521","pred":"source","obj":"bionlp-st-ge-2016-reference-tees"},{"subj":"T522","pred":"source","obj":"bionlp-st-ge-2016-reference-tees"},{"subj":"T523","pred":"source","obj":"bionlp-st-ge-2016-reference-tees"},{"subj":"T524","pred":"source","obj":"bionlp-st-ge-2016-reference-tees"},{"subj":"T525","pred":"source","obj":"bionlp-st-ge-2016-reference-tees"}]},{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T83","span":{"begin":11,"end":16},"obj":"Protein"},{"id":"T84","span":{"begin":30,"end":39},"obj":"Negative_regulation"},{"id":"T85","span":{"begin":40,"end":44},"obj":"Protein"},{"id":"T86","span":{"begin":45,"end":49},"obj":"Entity"},{"id":"T87","span":{"begin":50,"end":65},"obj":"Phosphorylation"},{"id":"T88","span":{"begin":70,"end":77},"obj":"Negative_regulation"},{"id":"T89","span":{"begin":78,"end":82},"obj":"Protein"}],"relations":[{"id":"R69","pred":"causeOf","subj":"T83","obj":"T84"},{"id":"R70","pred":"causeOf","subj":"T84","obj":"T88"},{"id":"R71","pred":"themeOf","subj":"T86","obj":"T87"},{"id":"R72","pred":"partOf","subj":"T86","obj":"T85"},{"id":"R73","pred":"themeOf","subj":"T87","obj":"T84"},{"id":"R74","pred":"themeOf","subj":"T89","obj":"T88"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"attributes":[{"subj":"T83","pred":"source","obj":"bionlp-st-ge-2016-reference"},{"subj":"T84","pred":"source","obj":"bionlp-st-ge-2016-reference"},{"subj":"T85","pred":"source","obj":"bionlp-st-ge-2016-reference"},{"subj":"T86","pred":"source","obj":"bionlp-st-ge-2016-reference"},{"subj":"T87","pred":"source","obj":"bionlp-st-ge-2016-reference"},{"subj":"T88","pred":"source","obj":"bionlp-st-ge-2016-reference"},{"subj":"T89","pred":"source","obj":"bionlp-st-ge-2016-reference"}]},{"project":"test2","denotations":[{"id":"T53","span":{"begin":11,"end":16},"obj":"Protein"},{"id":"T54","span":{"begin":30,"end":39},"obj":"Negative_regulation"},{"id":"T55","span":{"begin":40,"end":44},"obj":"Protein"},{"id":"T56","span":{"begin":45,"end":49},"obj":"Entity"},{"id":"T57","span":{"begin":50,"end":65},"obj":"Phosphorylation"},{"id":"T58","span":{"begin":70,"end":77},"obj":"Negative_regulation"},{"id":"T59","span":{"begin":78,"end":82},"obj":"Protein"}],"relations":[{"id":"R45","pred":"causeOf","subj":"T53","obj":"T54"},{"id":"R46","pred":"causeOf","subj":"T54","obj":"T58"},{"id":"R47","pred":"partOf","subj":"T56","obj":"T55"},{"id":"R48","pred":"themeOf","subj":"T56","obj":"T57"},{"id":"R49","pred":"themeOf","subj":"T57","obj":"T54"},{"id":"R50","pred":"themeOf","subj":"T59","obj":"T58"}],"attributes":[{"subj":"T53","pred":"source","obj":"test2"},{"subj":"T54","pred":"source","obj":"test2"},{"subj":"T55","pred":"source","obj":"test2"},{"subj":"T56","pred":"source","obj":"test2"},{"subj":"T57","pred":"source","obj":"test2"},{"subj":"T58","pred":"source","obj":"test2"},{"subj":"T59","pred":"source","obj":"test2"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"bionlp-st-ge-2016-uniprot","color":"#93eccb","default":true},{"id":"pmc-enju-pas","color":"#ecb193"},{"id":"bionlp-st-ge-2016-spacy-parsed","color":"#9793ec"},{"id":"GO-BP","color":"#a9ec93"},{"id":"events-check-again","color":"#ec93c3"},{"id":"bionlp-st-ge-2016-reference-tees","color":"#93ddec"},{"id":"bionlp-st-ge-2016-reference","color":"#ece193"},{"id":"test2","color":"#c793ec"}]}]}}