PMC:3062687 / 399-606
Annnotations
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T244 | 23-27 | P23396 | denotes | RPS3 |
| T245 | 160-165 | P23396 | denotes | NleH1 |
| T246 | 189-193 | P23396 | denotes | RPS3 |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T159 | 0-1 | -LRB- | denotes | ( |
| T160 | 1-5 | NN | denotes | S209 |
| T161 | 5-6 | -RRB- | denotes | ) |
| T162 | 7-10 | VB | denotes | was |
| T163 | 11-18 | JJ | denotes | crucial |
| T164 | 19-22 | IN | denotes | for |
| T165 | 23-27 | NN | denotes | RPS3 |
| T166 | 28-35 | JJ | denotes | nuclear |
| T167 | 36-48 | NN | denotes | localization |
| T168 | 49-51 | IN | denotes | in |
| T169 | 52-60 | NN | denotes | response |
| T170 | 61-63 | TO | denotes | to |
| T171 | 64-74 | VB | denotes | activating |
| T172 | 75-82 | NN | denotes | stimuli |
| T173 | 84-92 | RB | denotes | Moreover |
| T174 | 92-93 | -COMMA- | denotes | , |
| T175 | 94-97 | DT | denotes | the |
| T176 | 98-107 | JJ | denotes | foodborne |
| T177 | 108-116 | NN | denotes | pathogen |
| T178 | 117-128 | FW | denotes | Escherichia |
| T179 | 129-133 | FW | denotes | coli |
| T180 | 134-138 | NN | denotes | O157 |
| T181 | 138-139 | -COLON- | denotes | : |
| T182 | 139-141 | NN | denotes | H7 |
| T183 | 142-151 | NN | denotes | virulence |
| T184 | 152-159 | NN | denotes | protein |
| T185 | 160-165 | NN | denotes | NleH1 |
| T186 | 166-178 | RB | denotes | specifically |
| T187 | 179-188 | VB | denotes | inhibited |
| T188 | 189-193 | NN | denotes | RPS3 |
| T189 | 194-198 | NN | denotes | S209 |
| R136 | T160 | T159 | arg2Of | S209,( |
| R137 | T161 | T159 | arg3Of | ),( |
| R140 | T162 | T168 | arg1Of | was,in |
| R141 | T163 | T162 | arg2Of | crucial,was |
| R142 | T163 | T164 | arg1Of | crucial,for |
| R143 | T167 | T164 | arg2Of | localization,for |
| R144 | T167 | T165 | arg1Of | localization,RPS3 |
| R145 | T167 | T166 | arg1Of | localization,nuclear |
| R146 | T168 | T170 | arg1Of | in,to |
| R147 | T169 | T168 | arg2Of | response,in |
| R148 | T172 | T168 | arg3Of | stimuli,in |
| R149 | T172 | T171 | arg1Of | stimuli,activating |
| R150 | T180 | T176 | arg1Of | O157,foodborne |
| R151 | T180 | T177 | arg1Of | O157,pathogen |
| R152 | T180 | T178 | arg1Of | O157,Escherichia |
| R153 | T180 | T179 | arg1Of | O157,coli |
| R154 | T180 | T181 | arg1Of | O157,: |
| R155 | T181 | T175 | arg1Of | :,the |
| R156 | T181 | T187 | arg1Of | :,inhibited |
| R160 | T185 | T181 | arg2Of | NleH1,: |
| R161 | T185 | T182 | arg1Of | NleH1,H7 |
| R162 | T185 | T183 | arg1Of | NleH1,virulence |
| R163 | T185 | T184 | arg1Of | NleH1,protein |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T311 | 0-1 | -LRB- | denotes | ( |
| T312 | 1-5 | CD | denotes | S209 |
| T313 | 5-6 | -RRB- | denotes | ) |
| T314 | 7-10 | VBD | denotes | was |
| T315 | 11-18 | JJ | denotes | crucial |
| T316 | 19-22 | IN | denotes | for |
| T317 | 23-27 | JJ | denotes | RPS3 |
| T318 | 28-35 | JJ | denotes | nuclear |
| T319 | 36-48 | NN | denotes | localization |
| T320 | 49-51 | IN | denotes | in |
| T321 | 52-60 | NN | denotes | response |
| T322 | 61-63 | TO | denotes | to |
| T323 | 64-74 | VBG | denotes | activating |
| T324 | 75-82 | NNS | denotes | stimuli |
| T325 | 82-83 | . | denotes | . |
| T326 | 84-92 | RB | denotes | Moreover |
| T327 | 92-93 | , | denotes | , |
| T328 | 94-97 | DT | denotes | the |
| T329 | 98-107 | NN | denotes | foodborne |
| T330 | 108-116 | NN | denotes | pathogen |
| T331 | 117-128 | NNP | denotes | Escherichia |
| T332 | 129-133 | NNS | denotes | coli |
| T333 | 134-138 | NNP | denotes | O157 |
| T334 | 138-139 | : | denotes | : |
| T335 | 139-141 | NNP | denotes | H7 |
| T336 | 142-151 | NN | denotes | virulence |
| T337 | 152-159 | NN | denotes | protein |
| T338 | 160-165 | NNP | denotes | NleH1 |
| T339 | 166-178 | RB | denotes | specifically |
| T340 | 179-188 | VBD | denotes | inhibited |
| T341 | 189-193 | NNP | denotes | RPS3 |
| T342 | 194-198 | NNP | denotes | S209 |
| R249 | T315 | T314 | acomp | crucial,was |
| R250 | T316 | T315 | prep | for,crucial |
| R251 | T317 | T319 | amod | RPS3,localization |
| R252 | T318 | T319 | amod | nuclear,localization |
| R253 | T319 | T316 | pobj | localization,for |
| R254 | T320 | T319 | prep | in,localization |
| R255 | T321 | T320 | pobj | response,in |
| R256 | T322 | T321 | prep | to,response |
| R257 | T323 | T322 | pcomp | activating,to |
| R258 | T324 | T323 | dobj | stimuli,activating |
| R260 | T326 | T340 | advmod | Moreover,inhibited |
| R261 | T327 | T340 | punct | ",",inhibited |
| R262 | T328 | T330 | det | the,pathogen |
| R263 | T329 | T330 | compound | foodborne,pathogen |
| R264 | T330 | T340 | nsubj | pathogen,inhibited |
| R265 | T331 | T332 | compound | Escherichia,coli |
| R266 | T332 | T333 | compound | coli,O157 |
| R267 | T333 | T330 | appos | O157,pathogen |
| R268 | T334 | T333 | punct | :,O157 |
| R269 | T335 | T337 | compound | H7,protein |
| R270 | T336 | T337 | compound | virulence,protein |
| R271 | T337 | T330 | conj | protein,pathogen |
| R272 | T338 | T340 | nsubj | NleH1,inhibited |
| R273 | T339 | T340 | advmod | specifically,inhibited |
| R274 | T340 | T340 | ROOT | inhibited,inhibited |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T437 | 36-48 | http://purl.obolibrary.org/obo/GO_0051179 | denotes | localization |
| T438 | 142-151 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | virulence |
| T439 | 142-151 | http://purl.obolibrary.org/obo/GO_0016032 | denotes | virulence |
events-check-again
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T577 | 11-18 | Positive_regulation | denotes | crucial |
| T578 | 23-27 | Protein | denotes | RPS3 |
| T579 | 28-35 | Entity | denotes | nuclear |
| T580 | 36-48 | Localization | denotes | localization |
| T581 | 49-63 | Positive_regulation | denotes | in response to |
| T582 | 64-74 | Positive_regulation | denotes | activating |
| T583 | 160-165 | Protein | denotes | NleH1 |
| T584 | 179-188 | Negative_regulation | denotes | inhibited |
| T585 | 189-193 | Protein | denotes | RPS3 |
| T586 | 194-198 | Entity | denotes | S209 |
| R451 | T578 | T580 | themeOf | RPS3,localization |
| R452 | T578 | T582 | themeOf | RPS3,activating |
| R453 | T579 | T580 | locationOf | nuclear,localization |
| R454 | T580 | T581 | themeOf | localization,in response to |
| R455 | T581 | T577 | themeOf | in response to,crucial |
| R456 | T582 | T581 | causeOf | activating,in response to |
| R457 | T583 | T584 | causeOf | NleH1,inhibited |
| R460 | T586 | T585 | partOf | S209,RPS3 |
bionlp-st-ge-2016-reference-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T515 | 23-27 | Protein | denotes | RPS3 |
| T517 | 28-35 | Entity | denotes | nuclear |
| T518 | 36-48 | Localization | denotes | localization |
| T519 | 11-18 | Positive_regulation | denotes | crucial |
| T520 | 160-165 | Protein | denotes | NleH1 |
| T521 | 189-198 | Protein | denotes | RPS3 S209 |
| T525 | 179-188 | Negative_regulation | denotes | inhibited |
| R404 | T515 | T518 | themeOf | RPS3,localization |
| R406 | T517 | T518 | locationOf | nuclear,localization |
| R407 | T518 | T519 | themeOf | localization,crucial |
bionlp-st-ge-2016-reference
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T77 | 11-18 | Positive_regulation | denotes | crucial |
| T78 | 23-27 | Protein | denotes | RPS3 |
| T79 | 28-35 | Entity | denotes | nuclear |
| T80 | 36-48 | Localization | denotes | localization |
| T81 | 49-63 | Positive_regulation | denotes | in response to |
| T82 | 64-74 | Positive_regulation | denotes | activating |
| T83 | 160-165 | Protein | denotes | NleH1 |
| T84 | 179-188 | Negative_regulation | denotes | inhibited |
| T85 | 189-193 | Protein | denotes | RPS3 |
| T86 | 194-198 | Entity | denotes | S209 |
| R63 | T78 | T80 | themeOf | RPS3,localization |
| R64 | T78 | T82 | themeOf | RPS3,activating |
| R65 | T79 | T80 | locationOf | nuclear,localization |
| R66 | T80 | T81 | themeOf | localization,in response to |
| R67 | T81 | T77 | themeOf | in response to,crucial |
| R68 | T82 | T81 | causeOf | activating,in response to |
| R69 | T83 | T84 | causeOf | NleH1,inhibited |
| R72 | T86 | T85 | partOf | S209,RPS3 |
test2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T48 | 11-18 | Positive_regulation | denotes | crucial |
| T49 | 23-27 | Protein | denotes | RPS3 |
| T50 | 28-35 | Entity | denotes | nuclear |
| T51 | 36-48 | Localization | denotes | localization |
| T52 | 49-63 | Positive_regulation | denotes | in response to |
| T53 | 160-165 | Protein | denotes | NleH1 |
| T54 | 179-188 | Negative_regulation | denotes | inhibited |
| T55 | 189-193 | Protein | denotes | RPS3 |
| T56 | 194-198 | Entity | denotes | S209 |
| R40 | T49 | T51 | themeOf | RPS3,localization |
| R41 | T50 | T51 | locationOf | nuclear,localization |
| R42 | T51 | T52 | themeOf | localization,in response to |
| R43 | T51 | T48 | themeOf | localization,crucial |
| R44 | T52 | T48 | themeOf | in response to,crucial |
| R45 | T53 | T54 | causeOf | NleH1,inhibited |
| R47 | T56 | T55 | partOf | S209,RPS3 |