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PMC:3062687 / 33357-33643 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22422 117-121 P23396 denotes RPS3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T22354 0-3 DT denotes The
T22355 4-9 VB denotes fixed
T22356 10-15 NN denotes cells
T22357 16-20 VB denotes were
T22358 21-25 RB denotes then
T22359 26-39 VB denotes permeabilized
T22360 40-44 IN denotes with
T22361 45-49 CD denotes 0.05
T22362 50-51 NN denotes %
T22363 52-58 NN denotes Triton
T22364 59-64 NN denotes X-100
T22365 65-67 IN denotes in
T22366 68-71 NNP denotes PBS
T22367 72-75 CC denotes and
T22368 76-83 VB denotes stained
T22369 84-88 IN denotes with
T22370 89-104 JJ denotes FITC-conjugated
T22371 105-111 NN denotes rabbit
T22372 112-121 JJ denotes anti-RPS3
T22373 122-132 NN denotes antibodies
T22374 133-134 -LRB- denotes (
T22375 134-139 NNP denotes Primm
T22376 140-147 NNP denotes Biotech
T22377 147-148 -RRB- denotes )
T22378 148-149 -COMMA- denotes ,
T22379 150-152 CC denotes or
T22380 153-163 NNP denotes AlexaFluor
T22381 164-178 JJ denotes 594-conjugated
T22382 179-182 NN denotes rat
T22383 183-192 JJ denotes anti-Flag
T22384 193-203 NN denotes antibodies
T22385 204-205 -LRB- denotes (
T22386 205-207 NN denotes BD
T22387 207-208 -RRB- denotes )
T22388 209-212 IN denotes for
T22389 213-215 CD denotes 40
T22390 216-219 NN denotes min
T22391 220-228 RB denotes together
T22392 229-233 IN denotes with
T22393 234-235 CD denotes 1
T22394 236-241 NN denotes μg/ml
T22395 242-244 IN denotes of
T22396 245-252 NNP denotes Hoechst
T22397 253-258 CD denotes 33342
T22398 259-260 -LRB- denotes (
T22399 260-265 NN denotes Sigma
T22400 265-266 -RRB- denotes )
T22401 267-270 IN denotes for
T22402 271-272 CD denotes 5
T22403 273-276 NN denotes min
T22404 277-279 IN denotes at
T22405 280-282 CD denotes 25
T22406 283-286 NNP denotes °C.
R17803 T22356 T22354 arg1Of cells,The
R17804 T22356 T22355 arg2Of cells,fixed
R17805 T22356 T22357 arg1Of cells,were
R17806 T22356 T22359 arg2Of cells,permeabilized
R17807 T22356 T22368 arg2Of cells,stained
R17808 T22359 T22360 arg1Of permeabilized,with
R17809 T22359 T22367 arg1Of permeabilized,and
R17810 T22364 T22360 arg2Of X-100,with
R17811 T22364 T22361 arg1Of X-100,0.05
R17812 T22364 T22362 arg1Of X-100,%
R17813 T22364 T22363 arg1Of X-100,Triton
R17814 T22364 T22365 arg1Of X-100,in
R17815 T22366 T22365 arg2Of PBS,in
R17816 T22367 T22357 arg2Of and,were
R17817 T22367 T22358 arg1Of and,then
R17818 T22368 T22367 arg2Of stained,and
R17819 T22368 T22369 arg1Of stained,with
R17820 T22373 T22369 arg2Of antibodies,with
R17821 T22373 T22370 arg1Of antibodies,FITC-conjugated
R17822 T22373 T22371 arg1Of antibodies,rabbit
R17823 T22373 T22372 arg1Of antibodies,anti-RPS3
R17824 T22373 T22374 arg1Of antibodies,(
R17825 T22376 T22374 arg2Of Biotech,(
R17826 T22376 T22375 arg1Of Biotech,Primm
R17827 T22377 T22374 arg3Of ),(
R17828 T22379 T22378 arg1Of or,","
R17829 T22384 T22379 arg2Of antibodies,or
R17830 T22384 T22380 arg1Of antibodies,AlexaFluor
R17831 T22384 T22381 arg1Of antibodies,594-conjugated
R17832 T22384 T22382 arg1Of antibodies,rat
R17833 T22384 T22383 arg1Of antibodies,anti-Flag
R17834 T22384 T22385 arg1Of antibodies,(
R17835 T22385 T22388 arg1Of (,for
R17836 T22386 T22385 arg2Of BD,(
R17837 T22387 T22385 arg3Of ),(
R17838 T22390 T22388 arg2Of min,for
R17839 T22390 T22389 arg1Of min,40
R17840 T22391 T22392 arg1Of together,with
R17841 T22394 T22392 arg2Of μg/ml,with
R17842 T22394 T22393 arg1Of μg/ml,1
R17843 T22394 T22395 arg1Of μg/ml,of
R17844 T22394 T22401 arg1Of μg/ml,for
R17845 T22394 T22404 arg1Of μg/ml,at
R17846 T22396 T22395 arg2Of Hoechst,of
R17847 T22396 T22397 arg1Of Hoechst,33342
R17848 T22396 T22398 arg1Of Hoechst,(
R17849 T22399 T22398 arg2Of Sigma,(
R17850 T22400 T22398 arg3Of ),(
R17851 T22403 T22401 arg2Of min,for
R17852 T22403 T22402 arg1Of min,5
R17853 T22406 T22404 arg2Of °C.,at
R17854 T22406 T22405 arg1Of °C.,25

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T22451 0-3 DT denotes The
T22452 4-9 JJ denotes fixed
T22453 10-15 NNS denotes cells
T22454 16-20 VBD denotes were
T22455 21-25 RB denotes then
T22456 26-39 VBN denotes permeabilized
T22457 40-44 IN denotes with
T22458 45-49 CD denotes 0.05
T22459 50-51 NN denotes %
T22460 52-58 NNP denotes Triton
T22461 59-64 NNP denotes X-100
T22462 65-67 IN denotes in
T22463 68-71 NNP denotes PBS
T22464 72-75 CC denotes and
T22465 76-83 VBN denotes stained
T22466 84-88 IN denotes with
T22467 89-104 JJ denotes FITC-conjugated
T22468 105-111 NN denotes rabbit
T22469 112-121 JJ denotes anti-RPS3
T22470 122-132 NNS denotes antibodies
T22471 133-134 -LRB- denotes (
T22472 134-139 NNP denotes Primm
T22473 140-147 NNP denotes Biotech
T22474 147-148 -RRB- denotes )
T22475 148-149 , denotes ,
T22476 150-152 CC denotes or
T22477 153-163 NNP denotes AlexaFluor
T22478 164-178 JJ denotes 594-conjugated
T22479 179-182 NN denotes rat
T22480 183-192 JJ denotes anti-Flag
T22481 193-203 NNS denotes antibodies
T22482 204-205 -LRB- denotes (
T22483 205-207 NNP denotes BD
T22484 207-208 -RRB- denotes )
T22485 209-212 IN denotes for
T22486 213-215 CD denotes 40
T22487 216-219 NN denotes min
T22488 220-228 RB denotes together
T22489 229-233 IN denotes with
T22490 234-235 CD denotes 1
T22491 236-238 NN denotes μg
T22492 238-239 NN denotes /
T22493 239-241 NN denotes ml
T22494 242-244 IN denotes of
T22495 245-252 NNP denotes Hoechst
T22496 253-258 CD denotes 33342
T22497 259-260 -LRB- denotes (
T22498 260-265 NNP denotes Sigma
T22499 265-266 -RRB- denotes )
T22500 267-270 IN denotes for
T22501 271-272 CD denotes 5
T22502 273-276 NN denotes min
T22503 277-279 IN denotes at
T22504 280-282 CD denotes 25
T22505 283-284 CD denotes °
T22506 284-285 NNP denotes C
T22507 285-286 . denotes .
R17898 T22451 T22453 det The,cells
R17899 T22452 T22453 amod fixed,cells
R17900 T22453 T22456 nsubjpass cells,permeabilized
R17901 T22454 T22456 auxpass were,permeabilized
R17902 T22455 T22456 advmod then,permeabilized
R17903 T22456 T22456 ROOT permeabilized,permeabilized
R17904 T22457 T22456 prep with,permeabilized
R17905 T22458 T22459 nummod 0.05,%
R17906 T22459 T22461 compound %,X-100
R17907 T22460 T22461 compound Triton,X-100
R17908 T22461 T22457 pobj X-100,with
R17909 T22462 T22461 prep in,X-100
R17910 T22463 T22462 pobj PBS,in
R17911 T22464 T22456 cc and,permeabilized
R17912 T22465 T22456 conj stained,permeabilized
R17913 T22466 T22465 prep with,stained
R17914 T22467 T22470 amod FITC-conjugated,antibodies
R17915 T22468 T22470 nmod rabbit,antibodies
R17916 T22469 T22470 amod anti-RPS3,antibodies
R17917 T22470 T22466 pobj antibodies,with
R17918 T22471 T22473 punct (,Biotech
R17919 T22472 T22473 compound Primm,Biotech
R17920 T22473 T22470 appos Biotech,antibodies
R17921 T22474 T22470 punct ),antibodies
R17922 T22475 T22465 punct ",",stained
R17923 T22476 T22465 cc or,stained
R17924 T22477 T22479 nmod AlexaFluor,rat
R17925 T22478 T22479 amod 594-conjugated,rat
R17926 T22479 T22481 nmod rat,antibodies
R17927 T22480 T22481 amod anti-Flag,antibodies
R17928 T22481 T22456 conj antibodies,permeabilized
R17929 T22482 T22481 punct (,antibodies
R17930 T22483 T22481 appos BD,antibodies
R17931 T22484 T22481 punct ),antibodies
R17932 T22485 T22481 prep for,antibodies
R17933 T22486 T22487 nummod 40,min
R17934 T22487 T22485 pobj min,for
R17935 T22488 T22489 advmod together,with
R17936 T22489 T22481 prep with,antibodies
R17937 T22490 T22491 nummod 1,μg
R17938 T22491 T22493 compound μg,ml
R17939 T22492 T22493 compound /,ml
R17940 T22493 T22489 pobj ml,with
R17941 T22494 T22493 prep of,ml
R17942 T22495 T22496 compound Hoechst,33342
R17943 T22496 T22494 pobj 33342,of
R17944 T22497 T22498 punct (,Sigma
R17945 T22498 T22493 appos Sigma,ml
R17946 T22499 T22481 punct ),antibodies
R17947 T22500 T22481 prep for,antibodies
R17948 T22501 T22502 nummod 5,min
R17949 T22502 T22500 pobj min,for
R17950 T22503 T22502 prep at,min
R17951 T22504 T22505 nummod 25,°
R17952 T22505 T22503 pobj °,at
R17953 T22506 T22506 ROOT C,C
R17954 T22507 T22456 punct .,permeabilized

GO-MF

Id Subject Object Predicate Lexical cue
T22528 122-132 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T22529 193-203 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T22531 10-15 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T22532 122-132 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T22533 193-203 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T22534 122-132 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T22535 193-203 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies

sentences

Id Subject Object Predicate Lexical cue
T237 0-286 Sentence denotes The fixed cells were then permeabilized with 0.05 % Triton X-100 in PBS and stained with FITC-conjugated rabbit anti-RPS3 antibodies (Primm Biotech), or AlexaFluor 594-conjugated rat anti-Flag antibodies (BD) for 40 min together with 1 μg/ml of Hoechst 33342 (Sigma) for 5 min at 25 °C.

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T22536 117-121 Protein denotes RPS3