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PMC:3062687 / 3166-3353 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2158 29-33 P23396 denotes RPS3
T2159 118-139 P01375 denotes tumor necrosis factor
T2160 141-144 P01375 denotes TNF
T2161 179-183 P23396 denotes RPS3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2023 2-12 NN denotes activation
T2024 13-15 TO denotes To
T2025 16-20 VB denotes test
T2026 21-28 IN denotes whether
T2027 29-33 NN denotes RPS3
T2028 34-36 VB denotes is
T2029 37-51 VB denotes phosphorylated
T2030 52-58 IN denotes during
T2031 59-64 NN denotes NF-κB
T2032 65-75 NN denotes activation
T2033 75-76 -COMMA- denotes ,
T2034 77-79 PRP denotes we
T2035 80-89 VB denotes performed
T2036 90-102 JJ denotes 32P-labeling
T2037 103-114 NN denotes experiments
T2038 115-117 IN denotes in
T2039 118-123 NN denotes tumor
T2040 124-132 NN denotes necrosis
T2041 133-139 NN denotes factor
T2042 140-141 -LRB- denotes (
T2043 141-144 NN denotes TNF
T2044 144-145 -RRB- denotes )
T2045 145-156 JJ denotes -stimulated
T2046 157-160 NN denotes HEK
T2047 161-165 NN denotes 293T
T2048 166-171 NN denotes cells
T2049 173-178 IN denotes While
T2050 179-183 NN denotes RPS3
T2051 184-187 VB denotes was
R1593 T2025 T2024 arg1Of test,To
R1594 T2027 T2028 arg1Of RPS3,is
R1595 T2027 T2029 arg2Of RPS3,phosphorylated
R1596 T2029 T2025 arg2Of phosphorylated,test
R1597 T2029 T2026 arg1Of phosphorylated,whether
R1598 T2029 T2028 arg2Of phosphorylated,is
R1599 T2029 T2030 arg1Of phosphorylated,during
R1600 T2032 T2030 arg2Of activation,during
R1601 T2032 T2031 arg1Of activation,NF-κB
R1602 T2034 T2025 arg1Of we,test
R1603 T2034 T2035 arg1Of we,performed
R1604 T2035 T2024 modOf performed,To
R1605 T2035 T2033 arg1Of performed,","
R1606 T2037 T2035 arg2Of experiments,performed
R1607 T2037 T2036 arg1Of experiments,32P-labeling
R1608 T2037 T2038 arg1Of experiments,in
R1609 T2043 T2042 arg2Of TNF,(
R1610 T2044 T2042 arg3Of ),(
R1611 T2048 T2038 arg2Of cells,in
R1612 T2048 T2039 arg1Of cells,tumor
R1613 T2048 T2040 arg1Of cells,necrosis
R1614 T2048 T2041 arg1Of cells,factor
R1615 T2048 T2042 arg1Of cells,(
R1616 T2048 T2045 arg1Of cells,-stimulated
R1617 T2048 T2046 arg1Of cells,HEK
R1618 T2048 T2047 arg1Of cells,293T
R1619 T2050 T2051 arg1Of RPS3,was

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2176 2-12 NN denotes activation
T2177 13-15 TO denotes To
T2178 16-20 NN denotes test
T2179 21-28 IN denotes whether
T2180 29-33 NNP denotes RPS3
T2181 34-36 VBZ denotes is
T2182 37-51 VBN denotes phosphorylated
T2183 52-58 IN denotes during
T2184 59-64 NNP denotes NF-κB
T2185 65-75 NN denotes activation
T2186 75-76 , denotes ,
T2187 77-79 PRP denotes we
T2188 80-89 VBD denotes performed
T2189 90-102 JJ denotes 32P-labeling
T2190 103-114 NNS denotes experiments
T2191 115-117 IN denotes in
T2192 118-123 NN denotes tumor
T2193 124-132 NN denotes necrosis
T2194 133-139 NN denotes factor
T2195 140-141 -LRB- denotes (
T2196 141-144 NNP denotes TNF
T2197 144-145 -RRB- denotes )
T2198 145-146 : denotes -
T2199 146-156 VBN denotes stimulated
T2200 157-160 NNP denotes HEK
T2201 161-165 CD denotes 293T
T2202 166-171 NNS denotes cells
T2203 171-172 . denotes .
T2204 173-178 IN denotes While
T2205 179-183 NNP denotes RPS3
T2206 184-187 VBD denotes was
R1734 T2177 T2178 aux To,test
R1735 T2178 T2188 npadvmod test,performed
R1736 T2179 T2181 mark whether,is
R1737 T2180 T2181 nsubj RPS3,is
R1738 T2181 T2188 advcl is,performed
R1739 T2182 T2181 acomp phosphorylated,is
R1740 T2183 T2182 prep during,phosphorylated
R1741 T2184 T2185 compound NF-κB,activation
R1742 T2185 T2183 pobj activation,during
R1743 T2186 T2188 punct ",",performed
R1744 T2187 T2188 nsubj we,performed
R1745 T2188 T2199 ccomp performed,stimulated
R1746 T2189 T2190 amod 32P-labeling,experiments
R1747 T2190 T2188 dobj experiments,performed
R1748 T2191 T2188 prep in,performed
R1749 T2192 T2193 compound tumor,necrosis
R1750 T2193 T2194 compound necrosis,factor
R1751 T2194 T2191 pobj factor,in
R1752 T2195 T2196 punct (,TNF
R1753 T2196 T2194 appos TNF,factor
R1754 T2197 T2188 punct ),performed
R1755 T2198 T2199 punct -,stimulated
R1756 T2199 T2199 ROOT stimulated,stimulated
R1757 T2200 T2201 compound HEK,293T
R1758 T2201 T2202 nummod 293T,cells
R1759 T2202 T2199 dobj cells,stimulated
R1760 T2203 T2199 punct .,stimulated

GO-BP

Id Subject Object Predicate Lexical cue
T2356 124-132 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T2357 124-132 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T2358 124-132 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T2359 124-132 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis

GO-CC

Id Subject Object Predicate Lexical cue
T2361 166-171 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T2012 13-172 Sentence denotes To test whether RPS3 is phosphorylated during NF-κB activation, we performed 32P-labeling experiments in tumor necrosis factor (TNF)-stimulated HEK 293T cells.
T26 13-172 Sentence denotes To test whether RPS3 is phosphorylated during NF-κB activation, we performed 32P-labeling experiments in tumor necrosis factor (TNF)-stimulated HEK 293T cells.

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T2482 29-33 Protein denotes RPS3
T2483 37-51 Phosphorylation denotes phosphorylated true
T2484 179-183 Protein denotes RPS3
R1967 T2482 T2483 themeOf RPS3,phosphorylated

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2369 2-12 Positive_regulation denotes activation
T2370 2-12 Positive_regulation denotes activation
T2373 29-33 Protein denotes RPS3
T2374 59-64 Protein denotes NF-κB
T2375 118-139 Protein denotes tumor necrosis factor
T2376 141-144 Protein denotes TNF
T2377 157-165 Protein denotes HEK 293T
T2378 37-51 Phosphorylation denotes phosphorylated
T2379 65-75 Positive_regulation denotes activation
T2380 179-183 Protein denotes RPS3
R1898 T2373 T2378 themeOf RPS3,phosphorylated
R1899 T2374 T2379 themeOf NF-κB,activation

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T1986 29-33 Protein denotes RPS3
T1987 37-51 Phosphorylation denotes phosphorylated true
T1988 179-183 Protein denotes RPS3
R1570 T1986 T1987 themeOf RPS3,phosphorylated

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T1964 29-33 Protein denotes RPS3 true
T1965 37-51 Phosphorylation denotes phosphorylated true
T1966 179-183 Protein denotes RPS3
R1559 T1964 T1965 themeOf RPS3,phosphorylated