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PMC:3062687 / 3146-3412 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2158 49-53 P23396 denotes RPS3
T2159 138-159 P01375 denotes tumor necrosis factor
T2160 161-164 P01375 denotes TNF
T2161 199-203 P23396 denotes RPS3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2019 1-3 IN denotes in
T2020 4-12 NN denotes response
T2021 13-15 TO denotes to
T2022 16-21 NN denotes NF-κB
T2023 22-32 NN denotes activation
T2024 33-35 TO denotes To
T2025 36-40 VB denotes test
T2026 41-48 IN denotes whether
T2027 49-53 NN denotes RPS3
T2028 54-56 VB denotes is
T2029 57-71 VB denotes phosphorylated
T2030 72-78 IN denotes during
T2031 79-84 NN denotes NF-κB
T2032 85-95 NN denotes activation
T2033 95-96 -COMMA- denotes ,
T2034 97-99 PRP denotes we
T2035 100-109 VB denotes performed
T2036 110-122 JJ denotes 32P-labeling
T2037 123-134 NN denotes experiments
T2038 135-137 IN denotes in
T2039 138-143 NN denotes tumor
T2040 144-152 NN denotes necrosis
T2041 153-159 NN denotes factor
T2042 160-161 -LRB- denotes (
T2043 161-164 NN denotes TNF
T2044 164-165 -RRB- denotes )
T2045 165-176 JJ denotes -stimulated
T2046 177-180 NN denotes HEK
T2047 181-185 NN denotes 293T
T2048 186-191 NN denotes cells
T2049 193-198 IN denotes While
T2050 199-203 NN denotes RPS3
T2051 204-207 VB denotes was
T2052 208-216 RB denotes scarcely
T2053 217-231 VB denotes phosphorylated
T2054 232-234 IN denotes in
T2055 235-247 JJ denotes unstimulated
T2056 248-253 NN denotes cells
T2057 253-254 -COMMA- denotes ,
T2058 255-257 PRP denotes we
T2059 258-266 VB denotes observed
R1589 T2019 T2021 arg1Of in,to
R1590 T2020 T2019 arg2Of response,in
R1591 T2023 T2019 arg3Of activation,in
R1592 T2023 T2022 arg1Of activation,NF-κB
R1593 T2025 T2024 arg1Of test,To
R1594 T2027 T2028 arg1Of RPS3,is
R1595 T2027 T2029 arg2Of RPS3,phosphorylated
R1596 T2029 T2025 arg2Of phosphorylated,test
R1597 T2029 T2026 arg1Of phosphorylated,whether
R1598 T2029 T2028 arg2Of phosphorylated,is
R1599 T2029 T2030 arg1Of phosphorylated,during
R1600 T2032 T2030 arg2Of activation,during
R1601 T2032 T2031 arg1Of activation,NF-κB
R1602 T2034 T2025 arg1Of we,test
R1603 T2034 T2035 arg1Of we,performed
R1604 T2035 T2024 modOf performed,To
R1605 T2035 T2033 arg1Of performed,","
R1606 T2037 T2035 arg2Of experiments,performed
R1607 T2037 T2036 arg1Of experiments,32P-labeling
R1608 T2037 T2038 arg1Of experiments,in
R1609 T2043 T2042 arg2Of TNF,(
R1610 T2044 T2042 arg3Of ),(
R1611 T2048 T2038 arg2Of cells,in
R1612 T2048 T2039 arg1Of cells,tumor
R1613 T2048 T2040 arg1Of cells,necrosis
R1614 T2048 T2041 arg1Of cells,factor
R1615 T2048 T2042 arg1Of cells,(
R1616 T2048 T2045 arg1Of cells,-stimulated
R1617 T2048 T2046 arg1Of cells,HEK
R1618 T2048 T2047 arg1Of cells,293T
R1619 T2050 T2051 arg1Of RPS3,was
R1620 T2050 T2053 arg2Of RPS3,phosphorylated
R1621 T2053 T2049 arg2Of phosphorylated,While
R1622 T2053 T2051 arg2Of phosphorylated,was
R1623 T2053 T2052 arg1Of phosphorylated,scarcely
R1624 T2053 T2054 arg1Of phosphorylated,in
R1625 T2056 T2054 arg2Of cells,in
R1626 T2056 T2055 arg1Of cells,unstimulated
R1627 T2058 T2059 arg1Of we,observed
R1628 T2059 T2049 arg1Of observed,While
R1629 T2059 T2057 arg1Of observed,","

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2172 1-3 IN denotes in
T2173 4-12 NN denotes response
T2174 13-15 TO denotes to
T2175 16-21 JJ denotes NF-κB
T2176 22-32 NN denotes activation
T2177 33-35 TO denotes To
T2178 36-40 NN denotes test
T2179 41-48 IN denotes whether
T2180 49-53 NNP denotes RPS3
T2181 54-56 VBZ denotes is
T2182 57-71 VBN denotes phosphorylated
T2183 72-78 IN denotes during
T2184 79-84 NNP denotes NF-κB
T2185 85-95 NN denotes activation
T2186 95-96 , denotes ,
T2187 97-99 PRP denotes we
T2188 100-109 VBD denotes performed
T2189 110-122 JJ denotes 32P-labeling
T2190 123-134 NNS denotes experiments
T2191 135-137 IN denotes in
T2192 138-143 NN denotes tumor
T2193 144-152 NN denotes necrosis
T2194 153-159 NN denotes factor
T2195 160-161 -LRB- denotes (
T2196 161-164 NNP denotes TNF
T2197 164-165 -RRB- denotes )
T2198 165-166 : denotes -
T2199 166-176 VBN denotes stimulated
T2200 177-180 NNP denotes HEK
T2201 181-185 CD denotes 293T
T2202 186-191 NNS denotes cells
T2203 191-192 . denotes .
T2204 193-198 IN denotes While
T2205 199-203 NNP denotes RPS3
T2206 204-207 VBD denotes was
T2207 208-216 RB denotes scarcely
T2208 217-231 VBN denotes phosphorylated
T2209 232-234 IN denotes in
T2210 235-247 JJ denotes unstimulated
T2211 248-253 NNS denotes cells
T2212 253-254 , denotes ,
T2213 255-257 PRP denotes we
T2214 258-266 VBD denotes observed
R1730 T2173 T2172 pobj response,in
R1731 T2174 T2173 prep to,response
R1732 T2175 T2176 amod NF-κB,activation
R1733 T2176 T2174 pobj activation,to
R1734 T2177 T2178 aux To,test
R1735 T2178 T2188 npadvmod test,performed
R1736 T2179 T2181 mark whether,is
R1737 T2180 T2181 nsubj RPS3,is
R1738 T2181 T2188 advcl is,performed
R1739 T2182 T2181 acomp phosphorylated,is
R1740 T2183 T2182 prep during,phosphorylated
R1741 T2184 T2185 compound NF-κB,activation
R1742 T2185 T2183 pobj activation,during
R1743 T2186 T2188 punct ",",performed
R1744 T2187 T2188 nsubj we,performed
R1745 T2188 T2199 ccomp performed,stimulated
R1746 T2189 T2190 amod 32P-labeling,experiments
R1747 T2190 T2188 dobj experiments,performed
R1748 T2191 T2188 prep in,performed
R1749 T2192 T2193 compound tumor,necrosis
R1750 T2193 T2194 compound necrosis,factor
R1751 T2194 T2191 pobj factor,in
R1752 T2195 T2196 punct (,TNF
R1753 T2196 T2194 appos TNF,factor
R1754 T2197 T2188 punct ),performed
R1755 T2198 T2199 punct -,stimulated
R1756 T2199 T2199 ROOT stimulated,stimulated
R1757 T2200 T2201 compound HEK,293T
R1758 T2201 T2202 nummod 293T,cells
R1759 T2202 T2199 dobj cells,stimulated
R1760 T2203 T2199 punct .,stimulated
R1761 T2204 T2208 mark While,phosphorylated
R1762 T2205 T2208 nsubjpass RPS3,phosphorylated
R1763 T2206 T2208 auxpass was,phosphorylated
R1764 T2207 T2208 advmod scarcely,phosphorylated
R1765 T2208 T2214 advcl phosphorylated,observed
R1766 T2209 T2208 prep in,phosphorylated
R1767 T2210 T2211 amod unstimulated,cells
R1768 T2211 T2209 pobj cells,in
R1769 T2212 T2214 punct ",",observed
R1770 T2213 T2214 nsubj we,observed
R1771 T2214 T2214 ROOT observed,observed

GO-BP

Id Subject Object Predicate Lexical cue
T2356 144-152 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T2357 144-152 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T2358 144-152 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T2359 144-152 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis

GO-CC

Id Subject Object Predicate Lexical cue
T2362 248-253 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T2361 186-191 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T2012 33-192 Sentence denotes To test whether RPS3 is phosphorylated during NF-κB activation, we performed 32P-labeling experiments in tumor necrosis factor (TNF)-stimulated HEK 293T cells.
T26 33-192 Sentence denotes To test whether RPS3 is phosphorylated during NF-κB activation, we performed 32P-labeling experiments in tumor necrosis factor (TNF)-stimulated HEK 293T cells.

events-check-again

Id Subject Object Predicate Lexical cue Negation Speculation
T2481 1-15 Positive_regulation denotes in response to true
T2482 49-53 Protein denotes RPS3
T2483 57-71 Phosphorylation denotes phosphorylated true
T2484 199-203 Protein denotes RPS3
T2485 217-231 Phosphorylation denotes phosphorylated true
R1967 T2482 T2483 themeOf RPS3,phosphorylated
R1968 T2484 T2485 themeOf RPS3,phosphorylated

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2367 16-21 Protein denotes NF-κB
T2369 22-32 Positive_regulation denotes activation
T2370 22-32 Positive_regulation denotes activation
T2371 4-12 Positive_regulation denotes response
T2372 4-12 Positive_regulation denotes response
T2373 49-53 Protein denotes RPS3
T2374 79-84 Protein denotes NF-κB
T2375 138-159 Protein denotes tumor necrosis factor
T2376 161-164 Protein denotes TNF
T2377 177-185 Protein denotes HEK 293T
T2378 57-71 Phosphorylation denotes phosphorylated
T2379 85-95 Positive_regulation denotes activation
T2380 199-203 Protein denotes RPS3
T2384 217-231 Phosphorylation denotes phosphorylated
R1894 T2367 T2369 themeOf NF-κB,activation
R1896 T2369 T2371 themeOf activation,response
R1897 T2370 T2372 themeOf activation,response
R1898 T2373 T2378 themeOf RPS3,phosphorylated
R1899 T2374 T2379 themeOf NF-κB,activation
R1900 T2380 T2384 themeOf RPS3,phosphorylated

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation Speculation
T1985 1-15 Positive_regulation denotes in response to true
T1986 49-53 Protein denotes RPS3
T1987 57-71 Phosphorylation denotes phosphorylated true
T1988 199-203 Protein denotes RPS3
T1989 217-231 Phosphorylation denotes phosphorylated true
R1571 T1988 T1989 themeOf RPS3,phosphorylated
R1570 T1986 T1987 themeOf RPS3,phosphorylated

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T1964 49-53 Protein denotes RPS3 true
T1965 57-71 Phosphorylation denotes phosphorylated true
T1966 199-203 Protein denotes RPS3
T1967 217-231 Phosphorylation denotes phosphorylated
R1559 T1964 T1965 themeOf RPS3,phosphorylated
R1560 T1966 T1967 themeOf RPS3,phosphorylated