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PMC:3062687 / 31430-31772 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T21599 96-100 O14920 denotes IKKβ
T21600 136-140 P25963 denotes IκBα
T21601 176-180 P23396 denotes RPS3

2_test

Id Subject Object Predicate Lexical cue
21399639-18045535-74765187 340-341 18045535 denotes 6
21399639-18045535-74765187 340-341 18045535 denotes 6

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T21551 0-4 NN denotes RNAi
T21552 5-8 CC denotes and
T21553 9-21 NN denotes Transfection
T21554 22-25 DT denotes The
T21555 26-31 NN denotes siRNA
T21556 32-33 -LRB- denotes (
T21557 33-45 JJ denotes sense-strand
T21558 46-54 NN denotes sequence
T21559 54-55 -RRB- denotes )
T21560 56-60 NN denotes IKKα
T21561 60-61 -COMMA- denotes ,
T21562 62-90 NN denotes 5′-AUGACAGAGAAUGAUCAUGUUCUGC
T21563 91-94 NN denotes -3′
T21564 94-95 -COLON- denotes ;
T21565 96-100 NN denotes IKKβ
T21566 100-101 -COMMA- denotes ,
T21567 102-130 NN denotes 5′-GCAGCAAGGAGAACAGAGGUUAAUA
T21568 131-134 CD denotes -3′
T21569 134-135 -COLON- denotes ;
T21570 136-140 NN denotes IκBα
T21571 140-141 -COMMA- denotes ,
T21572 142-170 NN denotes 5′-GAGCUCCGAGACUUUCGAGGAAAUA
T21573 171-174 NN denotes -3′
T21574 174-175 -COLON- denotes ;
T21575 176-183 NN denotes RPS3-3′
T21576 184-187 NN denotes UTR
T21577 187-188 -COMMA- denotes ,
T21578 189-213 NN denotes 5′-GGAUGUUGCUCUCUAAAGACC
T21579 214-217 NN denotes -3′
T21580 218-219 -LRB- denotes (
T21581 219-229 NN denotes Invitrogen
T21582 229-230 -RRB- denotes )
T21583 232-241 JJ denotes Transient
T21584 242-254 NN denotes transfection
T21585 255-257 IN denotes of
T21586 258-263 NN denotes siRNA
T21587 264-267 CC denotes and
T21588 268-271 NN denotes DNA
T21589 272-282 NN denotes constructs
T21590 283-287 IN denotes into
T21591 288-294 NN denotes Jurkat
T21592 295-300 NN denotes cells
T21593 301-304 CC denotes and
T21594 305-309 NN denotes 293T
T21595 310-315 NN denotes cells
T21596 316-319 VB denotes was
T21597 320-329 VB denotes described
T21598 330-341 NN denotes previously6
R17139 T21551 T21552 arg1Of RNAi,and
R17140 T21553 T21552 arg2Of Transfection,and
R17141 T21555 T21556 arg1Of siRNA,(
R17142 T21558 T21556 arg2Of sequence,(
R17143 T21558 T21557 arg1Of sequence,sense-strand
R17144 T21559 T21556 arg3Of ),(
R17145 T21560 T21554 arg1Of IKKα,The
R17146 T21560 T21555 arg1Of IKKα,siRNA
R17147 T21560 T21561 arg1Of IKKα,","
R17148 T21560 T21564 arg1Of IKKα,;
R17149 T21563 T21561 arg2Of -3′,","
R17150 T21563 T21562 arg1Of -3′,5′-AUGACAGAGAAUGAUCAUGUUCUGC
R17151 T21565 T21564 arg2Of IKKβ,;
R17152 T21565 T21566 arg1Of IKKβ,","
R17153 T21565 T21569 arg1Of IKKβ,;
R17154 T21565 T21577 arg1Of IKKβ,","
R17155 T21567 T21566 arg2Of 5′-GCAGCAAGGAGAACAGAGGUUAAUA,","
R17156 T21567 T21568 arg1Of 5′-GCAGCAAGGAGAACAGAGGUUAAUA,-3′
R17157 T21570 T21569 arg2Of IκBα,;
R17158 T21570 T21571 arg1Of IκBα,","
R17159 T21573 T21572 arg1Of -3′,5′-GAGCUCCGAGACUUUCGAGGAAAUA
R17160 T21573 T21574 arg1Of -3′,;
R17161 T21574 T21571 arg2Of ;,","
R17162 T21576 T21574 arg2Of UTR,;
R17163 T21576 T21575 arg1Of UTR,RPS3-3′
R17164 T21579 T21577 arg2Of -3′,","
R17165 T21579 T21578 arg1Of -3′,5′-GGAUGUUGCUCUCUAAAGACC
R17166 T21579 T21580 arg1Of -3′,(
R17167 T21581 T21580 arg2Of Invitrogen,(
R17168 T21582 T21580 arg3Of ),(
R17169 T21584 T21583 arg1Of transfection,Transient
R17170 T21584 T21585 arg1Of transfection,of
R17171 T21584 T21590 arg1Of transfection,into
R17172 T21584 T21596 arg1Of transfection,was
R17173 T21586 T21587 arg1Of siRNA,and
R17174 T21588 T21587 arg2Of DNA,and
R17175 T21589 T21585 arg2Of constructs,of
R17176 T21589 T21586 arg1Of constructs,siRNA
R17177 T21589 T21588 arg1Of constructs,DNA
R17178 T21592 T21591 arg1Of cells,Jurkat
R17179 T21592 T21593 arg1Of cells,and
R17180 T21593 T21590 arg2Of and,into
R17181 T21595 T21593 arg2Of cells,and
R17182 T21595 T21594 arg1Of cells,293T
R17183 T21598 T21596 arg2Of previously6,was
R17184 T21598 T21597 arg2Of previously6,described

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21602 0-4 NNS denotes RNAi
T21603 5-8 CC denotes and
T21604 9-21 NNP denotes Transfection
T21605 22-25 DT denotes The
T21606 26-31 NNP denotes siRNA
T21607 32-33 -LRB- denotes (
T21608 33-45 JJ denotes sense-strand
T21609 46-54 NN denotes sequence
T21610 54-55 -RRB- denotes )
T21611 56-60 NNP denotes IKKα
T21612 60-61 , denotes ,
T21613 62-63 CD denotes 5
T21614 63-64 SYM denotes ′
T21615 64-65 : denotes -
T21616 65-90 NNP denotes AUGACAGAGAAUGAUCAUGUUCUGC
T21617 91-93 CD denotes -3
T21618 93-94 NN denotes ′
T21619 94-95 : denotes ;
T21620 96-100 NNP denotes IKKβ
T21621 100-101 , denotes ,
T21622 102-103 CD denotes 5
T21623 103-104 SYM denotes ′
T21624 104-105 : denotes -
T21625 105-130 NNP denotes GCAGCAAGGAGAACAGAGGUUAAUA
T21626 131-133 CD denotes -3
T21627 133-134 NN denotes ′
T21628 134-135 : denotes ;
T21629 136-140 NNP denotes IκBα
T21630 140-141 , denotes ,
T21631 142-143 CD denotes 5
T21632 143-144 SYM denotes ′
T21633 144-145 : denotes -
T21634 145-170 NNP denotes GAGCUCCGAGACUUUCGAGGAAAUA
T21635 171-173 CD denotes -3
T21636 173-174 NN denotes ′
T21637 174-175 : denotes ;
T21638 176-182 NNP denotes RPS3-3
T21639 182-183 NNP denotes ′
T21640 184-187 NNP denotes UTR
T21641 187-188 , denotes ,
T21642 189-190 CD denotes 5
T21643 190-191 SYM denotes ′
T21644 191-192 : denotes -
T21645 192-213 NNP denotes GGAUGUUGCUCUCUAAAGACC
T21646 214-216 CD denotes -3
T21647 216-217 NN denotes ′
T21648 218-219 -LRB- denotes (
T21649 219-229 NNP denotes Invitrogen
T21650 229-230 -RRB- denotes )
T21651 230-231 . denotes .
T21652 232-241 JJ denotes Transient
T21653 242-254 NN denotes transfection
T21654 255-257 IN denotes of
T21655 258-263 NNP denotes siRNA
T21656 264-267 CC denotes and
T21657 268-271 NNP denotes DNA
T21658 272-282 VBZ denotes constructs
T21659 283-287 IN denotes into
T21660 288-294 NNP denotes Jurkat
T21661 295-300 NNS denotes cells
T21662 301-304 CC denotes and
T21663 305-309 JJ denotes 293T
T21664 310-315 NNS denotes cells
T21665 316-319 VBD denotes was
T21666 320-329 VBN denotes described
T21667 330-341 CD denotes previously6
T21668 341-342 . denotes .
R17185 T21602 T21602 ROOT RNAi,RNAi
R17186 T21603 T21602 cc and,RNAi
R17187 T21604 T21602 conj Transfection,RNAi
R17188 T21605 T21606 det The,siRNA
R17189 T21606 T21611 nmod siRNA,IKKα
R17190 T21607 T21606 punct (,siRNA
R17191 T21608 T21609 amod sense-strand,sequence
R17192 T21609 T21606 appos sequence,siRNA
R17193 T21610 T21611 punct ),IKKα
R17194 T21611 T21611 ROOT IKKα,IKKα
R17195 T21612 T21611 punct ",",IKKα
R17196 T21613 T21618 nummod 5,′
R17197 T21614 T21616 punct ′,AUGACAGAGAAUGAUCAUGUUCUGC
R17198 T21615 T21616 punct -,AUGACAGAGAAUGAUCAUGUUCUGC
R17199 T21616 T21618 nmod AUGACAGAGAAUGAUCAUGUUCUGC,′
R17200 T21617 T21618 nummod -3,′
R17201 T21618 T21611 appos ′,IKKα
R17202 T21619 T21611 punct ;,IKKα
R17203 T21620 T21611 conj IKKβ,IKKα
R17204 T21621 T21620 punct ",",IKKβ
R17205 T21622 T21627 nummod 5,′
R17206 T21623 T21625 punct ′,GCAGCAAGGAGAACAGAGGUUAAUA
R17207 T21624 T21625 punct -,GCAGCAAGGAGAACAGAGGUUAAUA
R17208 T21625 T21627 nmod GCAGCAAGGAGAACAGAGGUUAAUA,′
R17209 T21626 T21627 nummod -3,′
R17210 T21627 T21627 ROOT ′,′
R17211 T21628 T21627 punct ;,′
R17212 T21629 T21627 conj IκBα,′
R17213 T21630 T21629 punct ",",IκBα
R17214 T21631 T21636 nummod 5,′
R17215 T21632 T21634 punct ′,GAGCUCCGAGACUUUCGAGGAAAUA
R17216 T21633 T21634 punct -,GAGCUCCGAGACUUUCGAGGAAAUA
R17217 T21634 T21636 nmod GAGCUCCGAGACUUUCGAGGAAAUA,′
R17218 T21635 T21636 nummod -3,′
R17219 T21636 T21629 appos ′,IκBα
R17220 T21637 T21629 punct ;,IκBα
R17221 T21638 T21640 compound RPS3-3,UTR
R17222 T21639 T21640 compound ′,UTR
R17223 T21640 T21627 appos UTR,′
R17224 T21641 T21640 punct ",",UTR
R17225 T21642 T21647 nummod 5,′
R17226 T21643 T21645 punct ′,GGAUGUUGCUCUCUAAAGACC
R17227 T21644 T21645 punct -,GGAUGUUGCUCUCUAAAGACC
R17228 T21645 T21647 nmod GGAUGUUGCUCUCUAAAGACC,′
R17229 T21646 T21647 nummod -3,′
R17230 T21647 T21640 appos ′,UTR
R17231 T21648 T21649 punct (,Invitrogen
R17232 T21649 T21647 appos Invitrogen,′
R17233 T21650 T21649 punct ),Invitrogen
R17234 T21651 T21627 punct .,′
R17235 T21652 T21653 amod Transient,transfection
R17236 T21653 T21658 nsubj transfection,constructs
R17237 T21654 T21653 prep of,transfection
R17238 T21655 T21654 pobj siRNA,of
R17239 T21656 T21655 cc and,siRNA
R17240 T21657 T21655 conj DNA,siRNA
R17241 T21658 T21666 nsubjpass constructs,described
R17242 T21659 T21658 prep into,constructs
R17243 T21660 T21661 compound Jurkat,cells
R17244 T21661 T21659 pobj cells,into
R17245 T21662 T21661 cc and,cells
R17246 T21663 T21664 amod 293T,cells
R17247 T21664 T21661 conj cells,cells
R17248 T21665 T21666 auxpass was,described
R17249 T21666 T21666 ROOT described,described
R17250 T21667 T21666 dobj previously6,described
R17251 T21668 T21666 punct .,described

GO-BP

Id Subject Object Predicate Lexical cue
T21676 0-4 http://purl.obolibrary.org/obo/GO_0016246 denotes RNAi

GO-CC

Id Subject Object Predicate Lexical cue
T21677 295-300 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T21678 310-315 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T21548 0-21 Sentence denotes RNAi and Transfection
T21549 22-231 Sentence denotes The siRNA (sense-strand sequence) IKKα, 5′-AUGACAGAGAAUGAUCAUGUUCUGC -3′; IKKβ, 5′-GCAGCAAGGAGAACAGAGGUUAAUA -3′; IκBα, 5′-GAGCUCCGAGACUUUCGAGGAAAUA -3′; RPS3-3′ UTR, 5′-GGAUGUUGCUCUCUAAAGACC -3′ (Invitrogen).
T21550 232-342 Sentence denotes Transient transfection of siRNA and DNA constructs into Jurkat cells and 293T cells was described previously6.
T217 0-21 Sentence denotes RNAi and Transfection
T218 22-231 Sentence denotes The siRNA (sense-strand sequence) IKKα, 5′-AUGACAGAGAAUGAUCAUGUUCUGC -3′; IKKβ, 5′-GCAGCAAGGAGAACAGAGGUUAAUA -3′; IκBα, 5′-GAGCUCCGAGACUUUCGAGGAAAUA -3′; RPS3-3′ UTR, 5′-GGAUGUUGCUCUCUAAAGACC -3′ (Invitrogen).
T219 232-342 Sentence denotes Transient transfection of siRNA and DNA constructs into Jurkat cells and 293T cells was described previously6.

events-check-again

Id Subject Object Predicate Lexical cue
T21698 56-60 Protein denotes IKKα
T21699 96-100 Protein denotes IKKβ
T21700 136-140 Protein denotes IκBα
T21701 176-180 Protein denotes RPS3

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T21691 0-4 Protein denotes RNAi
T21692 9-21 Gene_expression denotes Transfection
T21693 9-21 Positive_regulation denotes Transfection
T21694 56-60 Protein denotes IKKα
T21695 96-100 Protein denotes IKKβ
T21696 136-140 Protein denotes IκBα
T21697 176-180 Protein denotes RPS3
R17252 T21691 T21692 themeOf RNAi,Transfection
R17253 T21692 T21693 themeOf Transfection,Transfection

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T21544 56-60 Protein denotes IKKα
T21545 96-100 Protein denotes IKKβ
T21546 136-140 Protein denotes IκBα
T21547 176-180 Protein denotes RPS3

test2

Id Subject Object Predicate Lexical cue
T21540 56-60 Protein denotes IKKα
T21541 96-100 Protein denotes IKKβ
T21542 136-140 Protein denotes IκBα
T21543 176-180 Protein denotes RPS3