> top > docs > PMC:3062687 > spans > 3126-4042 > annotations

PMC:3062687 / 3126-4042 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2157 0-4 P23396 denotes RPS3
T2158 69-73 P23396 denotes RPS3
T2159 158-179 P01375 denotes tumor necrosis factor
T2160 181-184 P01375 denotes TNF
T2161 219-223 P23396 denotes RPS3
T2162 332-335 P01375 denotes TNF
T2163 371-375 P23396 denotes RPS3
T2164 414-418 P23396 denotes RPS3
T2165 471-475 P23396 denotes RPS3
T2166 592-595 P01375 denotes TNF
T2167 695-699 P25963 denotes IκBα
T2168 738-742 P23396 denotes RPS3
T2169 901-905 P23396 denotes RPS3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2017 0-4 NN denotes RPS3
T2018 5-20 NN denotes phosphorylation
T2019 21-23 IN denotes in
T2020 24-32 NN denotes response
T2021 33-35 TO denotes to
T2022 36-41 NN denotes NF-κB
T2023 42-52 NN denotes activation
T2024 53-55 TO denotes To
T2025 56-60 VB denotes test
T2026 61-68 IN denotes whether
T2027 69-73 NN denotes RPS3
T2028 74-76 VB denotes is
T2029 77-91 VB denotes phosphorylated
T2030 92-98 IN denotes during
T2031 99-104 NN denotes NF-κB
T2032 105-115 NN denotes activation
T2033 115-116 -COMMA- denotes ,
T2034 117-119 PRP denotes we
T2035 120-129 VB denotes performed
T2036 130-142 JJ denotes 32P-labeling
T2037 143-154 NN denotes experiments
T2038 155-157 IN denotes in
T2039 158-163 NN denotes tumor
T2040 164-172 NN denotes necrosis
T2041 173-179 NN denotes factor
T2042 180-181 -LRB- denotes (
T2043 181-184 NN denotes TNF
T2044 184-185 -RRB- denotes )
T2045 185-196 JJ denotes -stimulated
T2046 197-200 NN denotes HEK
T2047 201-205 NN denotes 293T
T2048 206-211 NN denotes cells
T2049 213-218 IN denotes While
T2050 219-223 NN denotes RPS3
T2051 224-227 VB denotes was
T2052 228-236 RB denotes scarcely
T2053 237-251 VB denotes phosphorylated
T2054 252-254 IN denotes in
T2055 255-267 JJ denotes unstimulated
T2056 268-273 NN denotes cells
T2057 273-274 -COMMA- denotes ,
T2058 275-277 PRP denotes we
T2059 278-286 VB denotes observed
T2060 287-288 DT denotes a
T2061 289-295 JJ denotes marked
T2062 296-304 NN denotes increase
T2063 305-307 IN denotes in
T2064 308-325 NN denotes 32P-incorporation
T2065 326-331 IN denotes after
T2066 332-335 NN denotes TNF
T2067 336-347 NN denotes stimulation
T2068 348-355 IN denotes despite
T2069 356-358 DT denotes no
T2070 359-367 NN denotes increase
T2071 368-370 IN denotes in
T2072 371-375 NN denotes RPS3
T2073 376-383 NN denotes protein
T2074 384-385 -LRB- denotes (
T2075 385-389 NN denotes Fig.
T2076 390-392 NN denotes 1a
T2077 392-393 -RRB- denotes )
T2078 395-397 TO denotes To
T2079 398-407 VB denotes determine
T2080 408-413 WDT denotes which
T2081 414-418 NN denotes RPS3
T2082 419-427 NN denotes residues
T2083 428-432 VB denotes were
T2084 433-447 VB denotes phosphorylated
T2085 447-448 -COMMA- denotes ,
T2086 449-451 PRP denotes we
T2087 452-470 VB denotes immunoprecipitated
T2088 471-475 NN denotes RPS3
T2089 476-480 IN denotes from
T2090 481-487 CC denotes either
T2091 488-495 VB denotes resting
T2092 496-498 CC denotes or
T2093 499-509 VB denotes stimulated
T2094 510-515 NN denotes cells
T2095 516-519 CC denotes and
T2096 520-529 VB denotes performed
T2097 530-544 NN denotes immunoblotting
T2098 545-549 IN denotes with
T2099 550-574 JJ denotes phosphorylation-specific
T2100 575-585 NN denotes antibodies
T2101 587-591 CC denotes Both
T2102 592-595 NN denotes TNF
T2103 596-599 CC denotes and
T2104 600-607 NN denotes phorbol
T2105 608-617 NN denotes myristate
T2106 618-635 NN denotes acetate/ionomycin
T2107 636-637 -LRB- denotes (
T2108 637-642 NN denotes PMA+I
T2109 642-643 -RRB- denotes )
T2110 644-654 VB denotes stimulated
T2111 655-660 JJ denotes rapid
T2112 661-676 NN denotes phosphorylation
T2113 677-680 CC denotes and
T2114 681-691 NN denotes degradaion
T2115 692-694 IN denotes of
T2116 695-699 NN denotes IκBα
T2117 700-706 IN denotes within
T2118 707-708 CD denotes 5
T2119 709-712 NN denotes min
T2120 713-718 WDT denotes which
T2121 719-722 VB denotes was
T2122 723-734 VB denotes accompanied
T2123 735-737 IN denotes by
T2124 738-742 NN denotes RPS3
T2125 743-758 NN denotes phosphorylation
T2126 759-761 IN denotes on
T2127 762-768 NN denotes serine
T2128 769-777 NN denotes residues
T2129 778-779 -LRB- denotes (
T2130 779-783 NN denotes Fig.
T2131 784-786 NN denotes 1b
T2132 787-790 CC denotes and
T2133 791-795 NN denotes data
T2134 796-799 RB denotes not
T2135 800-805 VB denotes shown
T2136 805-806 -RRB- denotes )
T2137 806-807 -COMMA- denotes ,
T2138 808-815 JJ denotes similar
T2139 816-818 TO denotes to
T2140 819-822 DT denotes the
T2141 823-825 FW denotes in
T2142 826-830 FW denotes vivo
T2143 831-839 NN denotes labeling
T2144 841-843 PRP denotes We
T2145 844-847 VB denotes did
T2146 848-851 RB denotes not
T2147 852-858 VB denotes detect
T2148 859-868 NN denotes tyrosine-
T2149 869-871 CC denotes or
T2150 872-897 NN denotes threonine-phosphorylation
T2151 898-900 IN denotes of
T2152 901-905 NN denotes RPS3
T2153 906-907 -LRB- denotes (
T2154 907-911 NN denotes Fig.
T2155 912-914 NN denotes 1b
T2156 914-915 -RRB- denotes )
R1587 T2018 T2017 arg1Of phosphorylation,RPS3
R1588 T2018 T2019 arg1Of phosphorylation,in
R1589 T2019 T2021 arg1Of in,to
R1590 T2020 T2019 arg2Of response,in
R1591 T2023 T2019 arg3Of activation,in
R1592 T2023 T2022 arg1Of activation,NF-κB
R1593 T2025 T2024 arg1Of test,To
R1594 T2027 T2028 arg1Of RPS3,is
R1595 T2027 T2029 arg2Of RPS3,phosphorylated
R1596 T2029 T2025 arg2Of phosphorylated,test
R1597 T2029 T2026 arg1Of phosphorylated,whether
R1598 T2029 T2028 arg2Of phosphorylated,is
R1599 T2029 T2030 arg1Of phosphorylated,during
R1600 T2032 T2030 arg2Of activation,during
R1601 T2032 T2031 arg1Of activation,NF-κB
R1602 T2034 T2025 arg1Of we,test
R1603 T2034 T2035 arg1Of we,performed
R1604 T2035 T2024 modOf performed,To
R1605 T2035 T2033 arg1Of performed,","
R1606 T2037 T2035 arg2Of experiments,performed
R1607 T2037 T2036 arg1Of experiments,32P-labeling
R1608 T2037 T2038 arg1Of experiments,in
R1609 T2043 T2042 arg2Of TNF,(
R1610 T2044 T2042 arg3Of ),(
R1611 T2048 T2038 arg2Of cells,in
R1612 T2048 T2039 arg1Of cells,tumor
R1613 T2048 T2040 arg1Of cells,necrosis
R1614 T2048 T2041 arg1Of cells,factor
R1615 T2048 T2042 arg1Of cells,(
R1616 T2048 T2045 arg1Of cells,-stimulated
R1617 T2048 T2046 arg1Of cells,HEK
R1618 T2048 T2047 arg1Of cells,293T
R1619 T2050 T2051 arg1Of RPS3,was
R1620 T2050 T2053 arg2Of RPS3,phosphorylated
R1621 T2053 T2049 arg2Of phosphorylated,While
R1622 T2053 T2051 arg2Of phosphorylated,was
R1623 T2053 T2052 arg1Of phosphorylated,scarcely
R1624 T2053 T2054 arg1Of phosphorylated,in
R1625 T2056 T2054 arg2Of cells,in
R1626 T2056 T2055 arg1Of cells,unstimulated
R1627 T2058 T2059 arg1Of we,observed
R1628 T2059 T2049 arg1Of observed,While
R1629 T2059 T2057 arg1Of observed,","
R1630 T2059 T2068 arg1Of observed,despite
R1631 T2062 T2059 arg2Of increase,observed
R1632 T2062 T2060 arg1Of increase,a
R1633 T2062 T2061 arg1Of increase,marked
R1634 T2062 T2063 arg1Of increase,in
R1635 T2062 T2065 arg1Of increase,after
R1636 T2064 T2063 arg2Of 32P-incorporation,in
R1637 T2067 T2065 arg2Of stimulation,after
R1638 T2067 T2066 arg1Of stimulation,TNF
R1639 T2070 T2068 arg2Of increase,despite
R1640 T2070 T2069 arg1Of increase,no
R1641 T2070 T2071 arg1Of increase,in
R1642 T2073 T2071 arg2Of protein,in
R1643 T2073 T2072 arg1Of protein,RPS3
R1644 T2073 T2074 arg1Of protein,(
R1645 T2076 T2074 arg2Of 1a,(
R1646 T2076 T2075 arg1Of 1a,Fig.
R1647 T2077 T2074 arg3Of ),(
R1648 T2079 T2078 arg1Of determine,To
R1649 T2080 T2079 arg2Of which,determine
R1650 T2082 T2080 arg1Of residues,which
R1651 T2082 T2081 arg1Of residues,RPS3
R1652 T2082 T2083 arg1Of residues,were
R1653 T2082 T2084 arg2Of residues,phosphorylated
R1654 T2084 T2083 arg2Of phosphorylated,were
R1655 T2086 T2087 arg1Of we,immunoprecipitated
R1656 T2087 T2078 modOf immunoprecipitated,To
R1657 T2087 T2085 arg1Of immunoprecipitated,","
R1658 T2088 T2087 arg2Of RPS3,immunoprecipitated
R1659 T2088 T2089 arg1Of RPS3,from
R1660 T2091 T2092 arg1Of resting,or
R1661 T2092 T2095 arg1Of or,and
R1662 T2094 T2092 arg2Of cells,or
R1663 T2094 T2093 arg2Of cells,stimulated
R1664 T2095 T2089 arg2Of and,from
R1665 T2095 T2090 arg1Of and,either
R1666 T2095 T2098 arg1Of and,with
R1667 T2097 T2095 arg2Of immunoblotting,and
R1668 T2097 T2096 arg2Of immunoblotting,performed
R1669 T2100 T2098 arg2Of antibodies,with
R1670 T2100 T2099 arg1Of antibodies,phosphorylation-specific
R1671 T2102 T2103 arg1Of TNF,and
R1672 T2103 T2101 arg1Of and,Both
R1673 T2103 T2110 arg1Of and,stimulated
R1674 T2106 T2103 arg2Of acetate/ionomycin,and
R1675 T2106 T2104 arg1Of acetate/ionomycin,phorbol
R1676 T2106 T2105 arg1Of acetate/ionomycin,myristate
R1677 T2106 T2107 arg1Of acetate/ionomycin,(
R1678 T2108 T2107 arg2Of PMA+I,(
R1679 T2109 T2107 arg3Of ),(
R1680 T2110 T2117 arg1Of stimulated,within
R1681 T2112 T2111 arg1Of phosphorylation,rapid
R1682 T2112 T2113 arg1Of phosphorylation,and
R1683 T2113 T2110 arg2Of and,stimulated
R1684 T2114 T2113 arg2Of degradaion,and
R1685 T2114 T2115 arg1Of degradaion,of
R1686 T2116 T2115 arg2Of IκBα,of
R1687 T2119 T2117 arg2Of min,within
R1688 T2119 T2118 arg1Of min,5
R1689 T2119 T2120 arg1Of min,which
R1690 T2119 T2121 arg1Of min,was
R1691 T2119 T2122 arg2Of min,accompanied
R1692 T2122 T2121 arg2Of accompanied,was
R1693 T2125 T2122 arg1Of phosphorylation,accompanied
R1694 T2125 T2123 arg2Of phosphorylation,by
R1695 T2125 T2124 arg1Of phosphorylation,RPS3
R1696 T2125 T2126 arg1Of phosphorylation,on
R1697 T2128 T2126 arg2Of residues,on
R1698 T2128 T2127 arg1Of residues,serine
R1699 T2128 T2129 arg1Of residues,(
R1700 T2128 T2137 arg1Of residues,","
R1701 T2128 T2138 arg1Of residues,similar
R1702 T2131 T2130 arg1Of 1b,Fig.
R1703 T2131 T2132 arg1Of 1b,and
R1704 T2132 T2129 arg2Of and,(
R1705 T2133 T2132 arg2Of data,and
R1706 T2133 T2135 arg2Of data,shown
R1707 T2135 T2134 arg1Of shown,not
R1708 T2136 T2129 arg3Of ),(
R1709 T2138 T2139 arg1Of similar,to
R1710 T2142 T2141 arg1Of vivo,in
R1711 T2143 T2139 arg2Of labeling,to
R1712 T2143 T2140 arg1Of labeling,the
R1713 T2143 T2142 arg1Of labeling,vivo
R1714 T2144 T2145 arg1Of We,did
R1715 T2144 T2147 arg1Of We,detect
R1716 T2147 T2145 arg2Of detect,did
R1717 T2147 T2146 arg1Of detect,not
R1718 T2148 T2149 arg1Of tyrosine-,or
R1719 T2149 T2147 arg2Of or,detect
R1720 T2149 T2151 arg1Of or,of
R1721 T2150 T2149 arg2Of threonine-phosphorylation,or
R1722 T2152 T2151 arg2Of RPS3,of
R1723 T2152 T2153 arg1Of RPS3,(
R1724 T2155 T2153 arg2Of 1b,(
R1725 T2155 T2154 arg1Of 1b,Fig.
R1726 T2156 T2153 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2170 0-4 CD denotes RPS3
T2171 5-20 NN denotes phosphorylation
T2172 21-23 IN denotes in
T2173 24-32 NN denotes response
T2174 33-35 TO denotes to
T2175 36-41 JJ denotes NF-κB
T2176 42-52 NN denotes activation
T2177 53-55 TO denotes To
T2178 56-60 NN denotes test
T2179 61-68 IN denotes whether
T2180 69-73 NNP denotes RPS3
T2181 74-76 VBZ denotes is
T2182 77-91 VBN denotes phosphorylated
T2183 92-98 IN denotes during
T2184 99-104 NNP denotes NF-κB
T2185 105-115 NN denotes activation
T2186 115-116 , denotes ,
T2187 117-119 PRP denotes we
T2188 120-129 VBD denotes performed
T2189 130-142 JJ denotes 32P-labeling
T2190 143-154 NNS denotes experiments
T2191 155-157 IN denotes in
T2192 158-163 NN denotes tumor
T2193 164-172 NN denotes necrosis
T2194 173-179 NN denotes factor
T2195 180-181 -LRB- denotes (
T2196 181-184 NNP denotes TNF
T2197 184-185 -RRB- denotes )
T2198 185-186 : denotes -
T2199 186-196 VBN denotes stimulated
T2200 197-200 NNP denotes HEK
T2201 201-205 CD denotes 293T
T2202 206-211 NNS denotes cells
T2203 211-212 . denotes .
T2204 213-218 IN denotes While
T2205 219-223 NNP denotes RPS3
T2206 224-227 VBD denotes was
T2207 228-236 RB denotes scarcely
T2208 237-251 VBN denotes phosphorylated
T2209 252-254 IN denotes in
T2210 255-267 JJ denotes unstimulated
T2211 268-273 NNS denotes cells
T2212 273-274 , denotes ,
T2213 275-277 PRP denotes we
T2214 278-286 VBD denotes observed
T2215 287-288 DT denotes a
T2216 289-295 JJ denotes marked
T2217 296-304 NN denotes increase
T2218 305-307 IN denotes in
T2219 308-325 NN denotes 32P-incorporation
T2220 326-331 IN denotes after
T2221 332-335 NNP denotes TNF
T2222 336-347 NN denotes stimulation
T2223 348-355 IN denotes despite
T2224 356-358 DT denotes no
T2225 359-367 NN denotes increase
T2226 368-370 IN denotes in
T2227 371-375 CD denotes RPS3
T2228 376-383 NN denotes protein
T2229 384-385 -LRB- denotes (
T2230 385-389 NNP denotes Fig.
T2231 390-392 CD denotes 1a
T2232 392-393 -RRB- denotes )
T2233 393-394 . denotes .
T2234 395-397 TO denotes To
T2235 398-407 VB denotes determine
T2236 408-413 WDT denotes which
T2237 414-418 NNP denotes RPS3
T2238 419-427 NNS denotes residues
T2239 428-432 VBD denotes were
T2240 433-447 VBN denotes phosphorylated
T2241 447-448 , denotes ,
T2242 449-451 PRP denotes we
T2243 452-470 VBD denotes immunoprecipitated
T2244 471-475 CD denotes RPS3
T2245 476-480 IN denotes from
T2246 481-487 CC denotes either
T2247 488-495 VBG denotes resting
T2248 496-498 CC denotes or
T2249 499-509 VBN denotes stimulated
T2250 510-515 NNS denotes cells
T2251 516-519 CC denotes and
T2252 520-529 VBN denotes performed
T2253 530-544 VBG denotes immunoblotting
T2254 545-549 IN denotes with
T2255 550-574 JJ denotes phosphorylation-specific
T2256 575-585 NNS denotes antibodies
T2257 585-586 . denotes .
T2258 587-591 DT denotes Both
T2259 592-595 NNP denotes TNF
T2260 596-599 CC denotes and
T2261 600-607 JJ denotes phorbol
T2262 608-617 NN denotes myristate
T2263 618-635 NN denotes acetate/ionomycin
T2264 636-637 -LRB- denotes (
T2265 637-642 NNP denotes PMA+I
T2266 642-643 -RRB- denotes )
T2267 644-654 VBD denotes stimulated
T2268 655-660 JJ denotes rapid
T2269 661-676 NN denotes phosphorylation
T2270 677-680 CC denotes and
T2271 681-691 NN denotes degradaion
T2272 692-694 IN denotes of
T2273 695-699 NNP denotes IκBα
T2274 700-706 IN denotes within
T2275 707-708 CD denotes 5
T2276 709-712 NN denotes min
T2277 713-718 WDT denotes which
T2278 719-722 VBD denotes was
T2279 723-734 VBN denotes accompanied
T2280 735-737 IN denotes by
T2281 738-742 CD denotes RPS3
T2282 743-758 NN denotes phosphorylation
T2283 759-761 IN denotes on
T2284 762-768 NN denotes serine
T2285 769-777 NNS denotes residues
T2286 778-779 -LRB- denotes (
T2287 779-783 NNP denotes Fig.
T2288 784-786 CD denotes 1b
T2289 787-790 CC denotes and
T2290 791-795 NNS denotes data
T2291 796-799 RB denotes not
T2292 800-805 VBN denotes shown
T2293 805-806 -RRB- denotes )
T2294 806-807 , denotes ,
T2295 808-815 JJ denotes similar
T2296 816-818 TO denotes to
T2297 819-822 DT denotes the
T2298 823-825 IN denotes in
T2299 826-830 NN denotes vivo
T2300 831-839 VBG denotes labeling
T2301 839-840 . denotes .
T2302 841-843 PRP denotes We
T2303 844-847 VBD denotes did
T2304 848-851 RB denotes not
T2305 852-858 VB denotes detect
T2306 859-867 NN denotes tyrosine
T2307 867-868 : denotes -
T2308 869-871 CC denotes or
T2309 872-897 NN denotes threonine-phosphorylation
T2310 898-900 IN denotes of
T2311 901-905 NNP denotes RPS3
T2312 906-907 -LRB- denotes (
T2313 907-911 NNP denotes Fig.
T2314 912-914 CD denotes 1b
T2315 914-915 -RRB- denotes )
T2316 915-916 . denotes .
R1727 T2170 T2171 nummod RPS3,phosphorylation
R1728 T2171 T2178 nsubj phosphorylation,test
R1729 T2172 T2171 prep in,phosphorylation
R1730 T2173 T2172 pobj response,in
R1731 T2174 T2173 prep to,response
R1732 T2175 T2176 amod NF-κB,activation
R1733 T2176 T2174 pobj activation,to
R1734 T2177 T2178 aux To,test
R1735 T2178 T2188 npadvmod test,performed
R1736 T2179 T2181 mark whether,is
R1737 T2180 T2181 nsubj RPS3,is
R1738 T2181 T2188 advcl is,performed
R1739 T2182 T2181 acomp phosphorylated,is
R1740 T2183 T2182 prep during,phosphorylated
R1741 T2184 T2185 compound NF-κB,activation
R1742 T2185 T2183 pobj activation,during
R1743 T2186 T2188 punct ",",performed
R1744 T2187 T2188 nsubj we,performed
R1745 T2188 T2199 ccomp performed,stimulated
R1746 T2189 T2190 amod 32P-labeling,experiments
R1747 T2190 T2188 dobj experiments,performed
R1748 T2191 T2188 prep in,performed
R1749 T2192 T2193 compound tumor,necrosis
R1750 T2193 T2194 compound necrosis,factor
R1751 T2194 T2191 pobj factor,in
R1752 T2195 T2196 punct (,TNF
R1753 T2196 T2194 appos TNF,factor
R1754 T2197 T2188 punct ),performed
R1755 T2198 T2199 punct -,stimulated
R1756 T2199 T2199 ROOT stimulated,stimulated
R1757 T2200 T2201 compound HEK,293T
R1758 T2201 T2202 nummod 293T,cells
R1759 T2202 T2199 dobj cells,stimulated
R1760 T2203 T2199 punct .,stimulated
R1761 T2204 T2208 mark While,phosphorylated
R1762 T2205 T2208 nsubjpass RPS3,phosphorylated
R1763 T2206 T2208 auxpass was,phosphorylated
R1764 T2207 T2208 advmod scarcely,phosphorylated
R1765 T2208 T2214 advcl phosphorylated,observed
R1766 T2209 T2208 prep in,phosphorylated
R1767 T2210 T2211 amod unstimulated,cells
R1768 T2211 T2209 pobj cells,in
R1769 T2212 T2214 punct ",",observed
R1770 T2213 T2214 nsubj we,observed
R1771 T2214 T2214 ROOT observed,observed
R1772 T2215 T2217 det a,increase
R1773 T2216 T2217 amod marked,increase
R1774 T2217 T2214 dobj increase,observed
R1775 T2218 T2217 prep in,increase
R1776 T2219 T2218 pobj 32P-incorporation,in
R1777 T2220 T2217 prep after,increase
R1778 T2221 T2222 compound TNF,stimulation
R1779 T2222 T2220 pobj stimulation,after
R1780 T2223 T2214 prep despite,observed
R1781 T2224 T2225 det no,increase
R1782 T2225 T2223 pobj increase,despite
R1783 T2226 T2225 prep in,increase
R1784 T2227 T2228 nummod RPS3,protein
R1785 T2228 T2226 pobj protein,in
R1786 T2229 T2230 punct (,Fig.
R1787 T2230 T2225 appos Fig.,increase
R1788 T2231 T2230 nummod 1a,Fig.
R1789 T2232 T2214 punct ),observed
R1790 T2233 T2214 punct .,observed
R1791 T2234 T2235 aux To,determine
R1792 T2235 T2243 advcl determine,immunoprecipitated
R1793 T2236 T2238 det which,residues
R1794 T2237 T2238 compound RPS3,residues
R1795 T2238 T2239 nsubj residues,were
R1796 T2239 T2235 ccomp were,determine
R1797 T2240 T2239 attr phosphorylated,were
R1798 T2241 T2243 punct ",",immunoprecipitated
R1799 T2242 T2243 nsubj we,immunoprecipitated
R1800 T2243 T2243 ROOT immunoprecipitated,immunoprecipitated
R1801 T2244 T2243 dobj RPS3,immunoprecipitated
R1802 T2245 T2243 prep from,immunoprecipitated
R1803 T2246 T2247 preconj either,resting
R1804 T2247 T2245 pobj resting,from
R1805 T2248 T2247 cc or,resting
R1806 T2249 T2250 amod stimulated,cells
R1807 T2250 T2247 conj cells,resting
R1808 T2251 T2243 cc and,immunoprecipitated
R1809 T2252 T2243 conj performed,immunoprecipitated
R1810 T2253 T2252 xcomp immunoblotting,performed
R1811 T2254 T2253 prep with,immunoblotting
R1812 T2255 T2256 amod phosphorylation-specific,antibodies
R1813 T2256 T2254 pobj antibodies,with
R1814 T2257 T2243 punct .,immunoprecipitated
R1815 T2258 T2259 det Both,TNF
R1816 T2259 T2263 nmod TNF,acetate/ionomycin
R1817 T2260 T2259 cc and,TNF
R1818 T2261 T2259 conj phorbol,TNF
R1819 T2262 T2263 compound myristate,acetate/ionomycin
R1820 T2263 T2267 nsubj acetate/ionomycin,stimulated
R1821 T2264 T2265 punct (,PMA+I
R1822 T2265 T2263 appos PMA+I,acetate/ionomycin
R1823 T2266 T2263 punct ),acetate/ionomycin
R1824 T2267 T2267 ROOT stimulated,stimulated
R1825 T2268 T2269 amod rapid,phosphorylation
R1826 T2269 T2267 dobj phosphorylation,stimulated
R1827 T2270 T2269 cc and,phosphorylation
R1828 T2271 T2269 conj degradaion,phosphorylation
R1829 T2272 T2269 prep of,phosphorylation
R1830 T2273 T2272 pobj IκBα,of
R1831 T2274 T2267 prep within,stimulated
R1832 T2275 T2276 nummod 5,min
R1833 T2276 T2274 pobj min,within
R1834 T2277 T2279 nsubjpass which,accompanied
R1835 T2278 T2279 auxpass was,accompanied
R1836 T2279 T2276 relcl accompanied,min
R1837 T2280 T2279 agent by,accompanied
R1838 T2281 T2282 nummod RPS3,phosphorylation
R1839 T2282 T2280 pobj phosphorylation,by
R1840 T2283 T2282 prep on,phosphorylation
R1841 T2284 T2285 compound serine,residues
R1842 T2285 T2283 pobj residues,on
R1843 T2286 T2282 punct (,phosphorylation
R1844 T2287 T2282 appos Fig.,phosphorylation
R1845 T2288 T2287 nummod 1b,Fig.
R1846 T2289 T2282 cc and,phosphorylation
R1847 T2290 T2282 conj data,phosphorylation
R1848 T2291 T2292 neg not,shown
R1849 T2292 T2279 conj shown,accompanied
R1850 T2293 T2292 punct ),shown
R1851 T2294 T2292 punct ",",shown
R1852 T2295 T2292 conj similar,shown
R1853 T2296 T2295 prep to,similar
R1854 T2297 T2296 pobj the,to
R1855 T2298 T2297 prep in,the
R1856 T2299 T2300 compound vivo,labeling
R1857 T2300 T2267 advcl labeling,stimulated
R1858 T2301 T2267 punct .,stimulated
R1859 T2302 T2305 nsubj We,detect
R1860 T2303 T2305 aux did,detect
R1861 T2304 T2305 neg not,detect
R1862 T2305 T2305 ROOT detect,detect
R1863 T2306 T2305 dobj tyrosine,detect
R1864 T2307 T2306 punct -,tyrosine
R1865 T2308 T2306 cc or,tyrosine
R1866 T2309 T2306 conj threonine-phosphorylation,tyrosine
R1867 T2310 T2306 prep of,tyrosine
R1868 T2311 T2310 pobj RPS3,of
R1869 T2312 T2313 punct (,Fig.
R1870 T2313 T2311 appos Fig.,RPS3
R1871 T2314 T2313 nummod 1b,Fig.
R1872 T2315 T2311 punct ),RPS3
R1873 T2316 T2305 punct .,detect

GO-BP

Id Subject Object Predicate Lexical cue
T2351 5-20 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T2352 550-565 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T2353 661-676 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T2354 743-758 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T2355 882-897 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T2356 164-172 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T2357 164-172 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T2358 164-172 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T2359 164-172 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis

GO-MF

Id Subject Object Predicate Lexical cue
T2360 575-585 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T2362 268-273 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T2363 510-515 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T2364 575-585 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T2365 575-585 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T2361 206-211 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T2011 0-52 Sentence denotes RPS3 phosphorylation in response to NF-κB activation
T2012 53-212 Sentence denotes To test whether RPS3 is phosphorylated during NF-κB activation, we performed 32P-labeling experiments in tumor necrosis factor (TNF)-stimulated HEK 293T cells.
T2013 213-394 Sentence denotes While RPS3 was scarcely phosphorylated in unstimulated cells, we observed a marked increase in 32P-incorporation after TNF stimulation despite no increase in RPS3 protein (Fig. 1a).
T2014 395-586 Sentence denotes To determine which RPS3 residues were phosphorylated, we immunoprecipitated RPS3 from either resting or stimulated cells and performed immunoblotting with phosphorylation-specific antibodies.
T2015 587-840 Sentence denotes Both TNF and phorbol myristate acetate/ionomycin (PMA+I) stimulated rapid phosphorylation and degradaion of IκBα within 5 min which was accompanied by RPS3 phosphorylation on serine residues (Fig. 1b and data not shown), similar to the in vivo labeling.
T2016 841-916 Sentence denotes We did not detect tyrosine- or threonine-phosphorylation of RPS3 (Fig. 1b).
T25 0-52 Sentence denotes RPS3 phosphorylation in response to NF-κB activation
T26 53-212 Sentence denotes To test whether RPS3 is phosphorylated during NF-κB activation, we performed 32P-labeling experiments in tumor necrosis factor (TNF)-stimulated HEK 293T cells.
T27 213-394 Sentence denotes While RPS3 was scarcely phosphorylated in unstimulated cells, we observed a marked increase in 32P-incorporation after TNF stimulation despite no increase in RPS3 protein (Fig. 1a).
T28 395-586 Sentence denotes To determine which RPS3 residues were phosphorylated, we immunoprecipitated RPS3 from either resting or stimulated cells and performed immunoblotting with phosphorylation-specific antibodies.
T29 587-840 Sentence denotes Both TNF and phorbol myristate acetate/ionomycin (PMA+I) stimulated rapid phosphorylation and degradaion of IκBα within 5 min which was accompanied by RPS3 phosphorylation on serine residues (Fig. 1b and data not shown), similar to the in vivo labeling.
T30 841-916 Sentence denotes We did not detect tyrosine- or threonine-phosphorylation of RPS3 (Fig. 1b).

events-check-again

Id Subject Object Predicate Lexical cue Negation Speculation
T2479 0-4 Protein denotes RPS3
T2480 5-20 Phosphorylation denotes phosphorylation
T2481 21-35 Positive_regulation denotes in response to true
T2482 69-73 Protein denotes RPS3
T2483 77-91 Phosphorylation denotes phosphorylated true
T2484 219-223 Protein denotes RPS3
T2485 237-251 Phosphorylation denotes phosphorylated true
T2486 296-304 Positive_regulation denotes increase
T2487 308-325 Phosphorylation denotes 32P-incorporation
T2488 359-367 Positive_regulation denotes increase true
T2489 371-375 Protein denotes RPS3
T2490 414-418 Protein denotes RPS3
T2491 419-427 Entity denotes residues
T2492 433-447 Phosphorylation denotes phosphorylated true
T2493 471-475 Protein denotes RPS3
T2494 644-654 Positive_regulation denotes stimulated
T2495 644-654 Positive_regulation denotes stimulated
T2496 661-676 Phosphorylation denotes phosphorylation
T2497 681-691 Protein_catabolism denotes degradaion
T2498 695-699 Protein denotes IκBα
T2499 738-742 Protein denotes RPS3
T2500 743-758 Phosphorylation denotes phosphorylation
T2501 762-777 Entity denotes serine residues
T2502 859-867 Entity denotes tyrosine
T2503 872-881 Entity denotes threonine
T2504 882-897 Phosphorylation denotes phosphorylation true
T2505 882-897 Phosphorylation denotes phosphorylation true
T2506 901-905 Protein denotes RPS3
R1965 T2479 T2480 themeOf RPS3,phosphorylation
R1966 T2480 T2481 themeOf phosphorylation,in response to
R1967 T2482 T2483 themeOf RPS3,phosphorylated
R1968 T2484 T2485 themeOf RPS3,phosphorylated
R1969 T2487 T2486 themeOf 32P-incorporation,increase
R1970 T2489 T2487 themeOf RPS3,32P-incorporation
R1971 T2489 T2488 themeOf RPS3,increase
R1972 T2491 T2492 themeOf residues,phosphorylated
R1973 T2491 T2490 partOf residues,RPS3
R1974 T2496 T2495 themeOf phosphorylation,stimulated
R1975 T2497 T2494 themeOf degradaion,stimulated
R1976 T2498 T2496 themeOf IκBα,phosphorylation
R1977 T2498 T2497 themeOf IκBα,degradaion
R1978 T2501 T2500 themeOf serine residues,phosphorylation
R1979 T2501 T2499 partOf serine residues,RPS3
R1980 T2502 T2505 themeOf tyrosine,phosphorylation
R1981 T2502 T2506 partOf tyrosine,RPS3
R1982 T2503 T2504 themeOf threonine,phosphorylation
R1983 T2503 T2506 partOf threonine,RPS3

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2366 0-4 Protein denotes RPS3
T2367 36-41 Protein denotes NF-κB
T2368 5-20 Phosphorylation denotes phosphorylation
T2369 42-52 Positive_regulation denotes activation
T2370 42-52 Positive_regulation denotes activation
T2371 24-32 Positive_regulation denotes response
T2372 24-32 Positive_regulation denotes response
T2373 69-73 Protein denotes RPS3
T2374 99-104 Protein denotes NF-κB
T2375 158-179 Protein denotes tumor necrosis factor
T2376 181-184 Protein denotes TNF
T2377 197-205 Protein denotes HEK 293T
T2378 77-91 Phosphorylation denotes phosphorylated
T2379 105-115 Positive_regulation denotes activation
T2380 219-223 Protein denotes RPS3
T2381 332-335 Protein denotes TNF
T2382 371-383 Protein denotes RPS3 protein
T2383 385-392 Protein denotes Fig. 1a
T2384 237-251 Phosphorylation denotes phosphorylated
T2385 336-347 Positive_regulation denotes stimulation
T2386 359-367 Positive_regulation denotes increase
T2387 359-367 Positive_regulation denotes increase
T2388 414-418 Protein denotes RPS3
T2389 471-475 Protein denotes RPS3
T2390 433-447 Phosphorylation denotes phosphorylated
T2391 592-595 Protein denotes TNF
T2392 695-699 Protein denotes IκBα
T2393 738-742 Protein denotes RPS3
T2394 661-676 Phosphorylation denotes phosphorylation
T2395 681-691 Protein_catabolism denotes degradaion
T2396 743-758 Phosphorylation denotes phosphorylation
T2397 644-654 Positive_regulation denotes stimulated
T2398 644-654 Positive_regulation denotes stimulated
T2399 644-654 Positive_regulation denotes stimulated
T2400 644-654 Positive_regulation denotes stimulated
T2401 901-905 Protein denotes RPS3
T2402 907-914 Protein denotes Fig. 1b
T2403 872-897 Phosphorylation denotes threonine-phosphorylation
R1893 T2366 T2368 themeOf RPS3,phosphorylation
R1894 T2367 T2369 themeOf NF-κB,activation
R1895 T2368 T2370 themeOf phosphorylation,activation
R1896 T2369 T2371 themeOf activation,response
R1897 T2370 T2372 themeOf activation,response
R1898 T2373 T2378 themeOf RPS3,phosphorylated
R1899 T2374 T2379 themeOf NF-κB,activation
R1900 T2380 T2384 themeOf RPS3,phosphorylated
R1901 T2381 T2385 themeOf TNF,stimulation
R1902 T2382 T2386 themeOf RPS3 protein,increase
R1903 T2383 T2387 themeOf Fig. 1a,increase
R1904 T2388 T2390 themeOf RPS3,phosphorylated
R1905 T2391 T2399 causeOf TNF,stimulated
R1906 T2391 T2400 causeOf TNF,stimulated
R1907 T2392 T2394 themeOf IκBα,phosphorylation
R1908 T2392 T2395 themeOf IκBα,degradaion
R1909 T2393 T2396 themeOf RPS3,phosphorylation
R1910 T2394 T2397 themeOf phosphorylation,stimulated
R1911 T2394 T2399 themeOf phosphorylation,stimulated
R1912 T2395 T2398 themeOf degradaion,stimulated
R1913 T2395 T2400 themeOf degradaion,stimulated
R1914 T2401 T2403 themeOf RPS3,threonine-phosphorylation

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation Speculation
T1983 0-4 Protein denotes RPS3
T1984 5-20 Phosphorylation denotes phosphorylation
T1985 21-35 Positive_regulation denotes in response to true
T1986 69-73 Protein denotes RPS3
T1987 77-91 Phosphorylation denotes phosphorylated true
T1988 219-223 Protein denotes RPS3
T1989 237-251 Phosphorylation denotes phosphorylated true
T1990 296-304 Positive_regulation denotes increase
T1991 308-325 Phosphorylation denotes 32P-incorporation
T1992 359-367 Positive_regulation denotes increase true
T1993 371-375 Protein denotes RPS3
T1994 414-418 Protein denotes RPS3
T1995 419-427 Entity denotes residues
T1996 433-447 Phosphorylation denotes phosphorylated true
T1997 471-475 Protein denotes RPS3
T1998 644-654 Positive_regulation denotes stimulated
T1999 644-654 Positive_regulation denotes stimulated
T2000 661-676 Phosphorylation denotes phosphorylation
T2001 681-691 Protein_catabolism denotes degradaion
T2002 695-699 Protein denotes IκBα
T2003 738-742 Protein denotes RPS3
T2004 743-758 Phosphorylation denotes phosphorylation
T2005 762-777 Entity denotes serine residues
T2006 859-867 Entity denotes tyrosine
T2007 872-881 Entity denotes threonine
T2008 882-897 Phosphorylation denotes phosphorylation true
T2009 882-897 Phosphorylation denotes phosphorylation true
T2010 901-905 Protein denotes RPS3
R1571 T1988 T1989 themeOf RPS3,phosphorylated
R1572 T1991 T1990 themeOf 32P-incorporation,increase
R1573 T1993 T1991 themeOf RPS3,32P-incorporation
R1574 T1993 T1992 themeOf RPS3,increase
R1575 T1995 T1996 themeOf residues,phosphorylated
R1576 T1995 T1994 partOf residues,RPS3
R1577 T2000 T1999 themeOf phosphorylation,stimulated
R1578 T2001 T1998 themeOf degradaion,stimulated
R1579 T2002 T2000 themeOf IκBα,phosphorylation
R1580 T2002 T2001 themeOf IκBα,degradaion
R1581 T2005 T2004 themeOf serine residues,phosphorylation
R1582 T2005 T2003 partOf serine residues,RPS3
R1583 T2006 T2009 themeOf tyrosine,phosphorylation
R1584 T2006 T2010 partOf tyrosine,RPS3
R1585 T2007 T2008 themeOf threonine,phosphorylation
R1586 T2007 T2010 partOf threonine,RPS3
R1568 T1983 T1984 themeOf RPS3,phosphorylation
R1569 T1984 T1985 themeOf phosphorylation,in response to
R1570 T1986 T1987 themeOf RPS3,phosphorylated

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T1962 0-4 Protein denotes RPS3
T1963 5-20 Phosphorylation denotes phosphorylation true
T1964 69-73 Protein denotes RPS3 true
T1965 77-91 Phosphorylation denotes phosphorylated true
T1966 219-223 Protein denotes RPS3
T1967 237-251 Phosphorylation denotes phosphorylated
T1968 296-304 Positive_regulation denotes increase true
T1969 359-367 Positive_regulation denotes increase true
T1970 371-375 Protein denotes RPS3
T1971 414-418 Protein denotes RPS3
T1972 419-427 Entity denotes residues
T1973 433-447 Phosphorylation denotes phosphorylated
T1974 471-475 Protein denotes RPS3
T1975 644-654 Positive_regulation denotes stimulated true
T1976 661-676 Phosphorylation denotes phosphorylation true
T1977 695-699 Protein denotes IκBα
T1978 738-742 Protein denotes RPS3
T1979 743-758 Phosphorylation denotes phosphorylation
T1980 762-768 Entity denotes serine
T1981 882-897 Phosphorylation denotes phosphorylation
T1982 901-905 Protein denotes RPS3
R1558 T1962 T1963 themeOf RPS3,phosphorylation
R1559 T1964 T1965 themeOf RPS3,phosphorylated
R1560 T1966 T1967 themeOf RPS3,phosphorylated
R1561 T1970 T1969 themeOf RPS3,increase
R1562 T1972 T1971 partOf residues,RPS3
R1563 T1972 T1973 themeOf residues,phosphorylated
R1564 T1976 T1975 themeOf phosphorylation,stimulated
R1565 T1977 T1976 themeOf IκBα,phosphorylation
R1566 T1978 T1979 themeOf RPS3,phosphorylation
R1567 T1982 T1981 themeOf RPS3,phosphorylation