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PMC:3062687 / 29924-30246 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20905 191-194 P01375 denotes TNF
T20906 308-312 P23396 denotes RPS3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20847 0-3 NN denotes 32P
T20848 4-6 FW denotes in
T20849 7-11 FW denotes vivo
T20850 12-20 NN denotes Labeling
T20851 21-24 NN denotes HEK
T20852 25-29 NN denotes 293T
T20853 30-35 NN denotes cells
T20854 36-40 VB denotes were
T20855 41-48 VB denotes labeled
T20856 49-53 IN denotes with
T20857 54-55 CD denotes 2
T20858 56-62 NN denotes mCi/ml
T20859 63-81 NN denotes 32P-orthophosphate
T20860 82-83 -LRB- denotes (
T20861 83-89 NNP denotes Perkin
T20862 90-95 NNP denotes Elmer
T20863 95-96 -RRB- denotes )
T20864 97-99 IN denotes in
T20865 100-114 JJ denotes phosphate-free
T20866 115-121 NN denotes medium
T20867 122-123 -LRB- denotes (
T20868 123-133 NN denotes Invitrogen
T20869 133-134 -RRB- denotes )
T20870 135-138 IN denotes for
T20871 139-140 CD denotes 2
T20872 141-142 NN denotes h
T20873 144-149 NN denotes Cells
T20874 150-154 VB denotes were
T20875 155-159 RB denotes then
T20876 160-164 VB denotes left
T20877 165-174 JJ denotes untreated
T20878 175-177 CC denotes or
T20879 178-185 VB denotes treated
T20880 186-190 IN denotes with
T20881 191-194 NN denotes TNF
T20882 195-196 -LRB- denotes (
T20883 196-198 CD denotes 50
T20884 199-204 NN denotes ng/ml
T20885 204-205 -COMMA- denotes ,
T20886 206-207 NNP denotes R
T20887 207-208 CC denotes &
T20888 208-209 NNP denotes D
T20889 210-217 NNP denotes Systems
T20890 217-218 -RRB- denotes )
T20891 219-222 IN denotes for
T20892 223-232 VB denotes indicated
T20893 233-240 NN denotes periods
T20894 242-246 NN denotes Cell
T20895 247-254 NN denotes lysates
T20896 255-259 VB denotes were
T20897 260-268 VB denotes prepared
T20898 269-272 CC denotes and
T20899 273-277 VB denotes used
T20900 278-281 IN denotes for
T20901 282-302 NN denotes immunoprecipitations
T20902 303-307 IN denotes with
T20903 308-312 NN denotes RPS3
T20904 313-321 NN denotes antibody
R16570 T20849 T20848 arg1Of vivo,in
R16571 T20850 T20847 arg1Of Labeling,32P
R16572 T20850 T20849 arg1Of Labeling,vivo
R16573 T20853 T20851 arg1Of cells,HEK
R16574 T20853 T20852 arg1Of cells,293T
R16575 T20853 T20854 arg1Of cells,were
R16576 T20853 T20855 arg2Of cells,labeled
R16577 T20855 T20854 arg2Of labeled,were
R16578 T20855 T20856 arg1Of labeled,with
R16579 T20859 T20856 arg2Of 32P-orthophosphate,with
R16580 T20859 T20857 arg1Of 32P-orthophosphate,2
R16581 T20859 T20858 arg1Of 32P-orthophosphate,mCi/ml
R16582 T20859 T20860 arg1Of 32P-orthophosphate,(
R16583 T20859 T20864 arg1Of 32P-orthophosphate,in
R16584 T20862 T20860 arg2Of Elmer,(
R16585 T20862 T20861 arg1Of Elmer,Perkin
R16586 T20863 T20860 arg3Of ),(
R16587 T20866 T20864 arg2Of medium,in
R16588 T20866 T20865 arg1Of medium,phosphate-free
R16589 T20866 T20867 arg1Of medium,(
R16590 T20866 T20870 arg1Of medium,for
R16591 T20868 T20867 arg2Of Invitrogen,(
R16592 T20869 T20867 arg3Of ),(
R16593 T20872 T20870 arg2Of h,for
R16594 T20872 T20871 arg1Of h,2
R16595 T20873 T20874 arg1Of Cells,were
R16596 T20873 T20876 arg2Of Cells,left
R16597 T20873 T20877 arg1Of Cells,untreated
R16598 T20873 T20879 arg2Of Cells,treated
R16599 T20876 T20874 arg2Of left,were
R16600 T20876 T20875 arg1Of left,then
R16601 T20877 T20878 arg1Of untreated,or
R16602 T20878 T20876 arg3Of or,left
R16603 T20879 T20878 arg2Of treated,or
R16604 T20879 T20880 arg1Of treated,with
R16605 T20881 T20880 arg2Of TNF,with
R16606 T20881 T20882 arg1Of TNF,(
R16607 T20881 T20891 arg1Of TNF,for
R16608 T20884 T20883 arg1Of ng/ml,50
R16609 T20884 T20885 arg1Of ng/ml,","
R16610 T20885 T20882 arg2Of ",",(
R16611 T20889 T20885 arg2Of Systems,","
R16612 T20889 T20886 arg1Of Systems,R
R16613 T20889 T20887 arg1Of Systems,&
R16614 T20889 T20888 arg1Of Systems,D
R16615 T20890 T20882 arg3Of ),(
R16616 T20893 T20891 arg2Of periods,for
R16617 T20893 T20892 arg2Of periods,indicated
R16618 T20895 T20894 arg1Of lysates,Cell
R16619 T20895 T20896 arg1Of lysates,were
R16620 T20895 T20897 arg2Of lysates,prepared
R16621 T20895 T20899 arg2Of lysates,used
R16622 T20897 T20898 arg1Of prepared,and
R16623 T20898 T20896 arg2Of and,were
R16624 T20898 T20900 arg1Of and,for
R16625 T20899 T20898 arg2Of used,and
R16626 T20901 T20900 arg2Of immunoprecipitations,for
R16627 T20901 T20902 arg1Of immunoprecipitations,with
R16628 T20904 T20902 arg2Of antibody,with
R16629 T20904 T20903 arg1Of antibody,RPS3

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20907 0-3 CD denotes 32P
T20908 4-6 IN denotes in
T20909 7-11 NN denotes vivo
T20910 12-20 VBG denotes Labeling
T20911 21-24 NNP denotes HEK
T20912 25-29 CD denotes 293T
T20913 30-35 NNS denotes cells
T20914 36-40 VBD denotes were
T20915 41-48 VBN denotes labeled
T20916 49-53 IN denotes with
T20917 54-55 CD denotes 2
T20918 56-62 NNP denotes mCi/ml
T20919 63-81 NNP denotes 32P-orthophosphate
T20920 82-83 -LRB- denotes (
T20921 83-89 NNP denotes Perkin
T20922 90-95 NNP denotes Elmer
T20923 95-96 -RRB- denotes )
T20924 97-99 IN denotes in
T20925 100-114 JJ denotes phosphate-free
T20926 115-121 NN denotes medium
T20927 122-123 -LRB- denotes (
T20928 123-133 NNP denotes Invitrogen
T20929 133-134 -RRB- denotes )
T20930 135-138 IN denotes for
T20931 139-140 CD denotes 2
T20932 141-143 NN denotes h.
T20933 144-149 NNS denotes Cells
T20934 150-154 VBD denotes were
T20935 155-159 RB denotes then
T20936 160-164 VBN denotes left
T20937 165-174 JJ denotes untreated
T20938 175-177 CC denotes or
T20939 178-185 VBN denotes treated
T20940 186-190 IN denotes with
T20941 191-194 NNP denotes TNF
T20942 195-196 -LRB- denotes (
T20943 196-198 CD denotes 50
T20944 199-204 NN denotes ng/ml
T20945 204-205 , denotes ,
T20946 206-209 NNP denotes R&D
T20947 210-217 NNPS denotes Systems
T20948 217-218 -RRB- denotes )
T20949 219-222 IN denotes for
T20950 223-232 VBN denotes indicated
T20951 233-240 NNS denotes periods
T20952 240-241 . denotes .
T20953 242-246 NN denotes Cell
T20954 247-254 NNS denotes lysates
T20955 255-259 VBD denotes were
T20956 260-268 VBN denotes prepared
T20957 269-272 CC denotes and
T20958 273-277 VBN denotes used
T20959 278-281 IN denotes for
T20960 282-302 NNS denotes immunoprecipitations
T20961 303-307 IN denotes with
T20962 308-312 JJ denotes RPS3
T20963 313-321 NN denotes antibody
T20964 321-322 . denotes .
R16630 T20907 T20915 nsubjpass 32P,labeled
R16631 T20908 T20907 prep in,32P
R16632 T20909 T20908 pobj vivo,in
R16633 T20910 T20915 prep Labeling,labeled
R16634 T20911 T20910 dobj HEK,Labeling
R16635 T20912 T20913 nummod 293T,cells
R16636 T20913 T20915 nsubjpass cells,labeled
R16637 T20914 T20915 auxpass were,labeled
R16638 T20915 T20915 ROOT labeled,labeled
R16639 T20916 T20915 prep with,labeled
R16640 T20917 T20919 nummod 2,32P-orthophosphate
R16641 T20918 T20919 compound mCi/ml,32P-orthophosphate
R16642 T20919 T20916 pobj 32P-orthophosphate,with
R16643 T20920 T20919 punct (,32P-orthophosphate
R16644 T20921 T20922 compound Perkin,Elmer
R16645 T20922 T20919 appos Elmer,32P-orthophosphate
R16646 T20923 T20919 punct ),32P-orthophosphate
R16647 T20924 T20915 prep in,labeled
R16648 T20925 T20926 amod phosphate-free,medium
R16649 T20926 T20924 pobj medium,in
R16650 T20927 T20928 punct (,Invitrogen
R16651 T20928 T20926 appos Invitrogen,medium
R16652 T20929 T20915 punct ),labeled
R16653 T20930 T20915 prep for,labeled
R16654 T20931 T20933 nummod 2,Cells
R16655 T20932 T20933 compound h.,Cells
R16656 T20933 T20930 pobj Cells,for
R16657 T20934 T20936 auxpass were,left
R16658 T20935 T20936 advmod then,left
R16659 T20936 T20915 conj left,labeled
R16660 T20937 T20936 oprd untreated,left
R16661 T20938 T20937 cc or,untreated
R16662 T20939 T20937 conj treated,untreated
R16663 T20940 T20939 prep with,treated
R16664 T20941 T20940 pobj TNF,with
R16665 T20942 T20944 punct (,ng/ml
R16666 T20943 T20944 nummod 50,ng/ml
R16667 T20944 T20937 appos ng/ml,untreated
R16668 T20945 T20944 punct ",",ng/ml
R16669 T20946 T20947 compound R&D,Systems
R16670 T20947 T20944 appos Systems,ng/ml
R16671 T20948 T20944 punct ),ng/ml
R16672 T20949 T20936 prep for,left
R16673 T20950 T20951 amod indicated,periods
R16674 T20951 T20949 pobj periods,for
R16675 T20952 T20936 punct .,left
R16676 T20953 T20954 compound Cell,lysates
R16677 T20954 T20956 nsubjpass lysates,prepared
R16678 T20955 T20956 auxpass were,prepared
R16679 T20956 T20956 ROOT prepared,prepared
R16680 T20957 T20956 cc and,prepared
R16681 T20958 T20956 conj used,prepared
R16682 T20959 T20958 prep for,used
R16683 T20960 T20959 pobj immunoprecipitations,for
R16684 T20961 T20960 prep with,immunoprecipitations
R16685 T20962 T20963 amod RPS3,antibody
R16686 T20963 T20961 pobj antibody,with
R16687 T20964 T20956 punct .,prepared

GO-MF

Id Subject Object Predicate Lexical cue
T20969 313-321 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-CC

Id Subject Object Predicate Lexical cue
T20970 30-35 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T20971 242-246 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T20972 313-321 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T20973 313-321 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody

sentences

Id Subject Object Predicate Lexical cue
T20843 0-20 Sentence denotes 32P in vivo Labeling
T20844 21-143 Sentence denotes HEK 293T cells were labeled with 2 mCi/ml 32P-orthophosphate (Perkin Elmer) in phosphate-free medium (Invitrogen) for 2 h.
T20845 144-241 Sentence denotes Cells were then left untreated or treated with TNF (50 ng/ml, R&D Systems) for indicated periods.
T20846 242-322 Sentence denotes Cell lysates were prepared and used for immunoprecipitations with RPS3 antibody.
T203 0-20 Sentence denotes 32P in vivo Labeling
T204 21-143 Sentence denotes HEK 293T cells were labeled with 2 mCi/ml 32P-orthophosphate (Perkin Elmer) in phosphate-free medium (Invitrogen) for 2 h.
T205 144-241 Sentence denotes Cells were then left untreated or treated with TNF (50 ng/ml, R&D Systems) for indicated periods.
T206 242-322 Sentence denotes Cell lysates were prepared and used for immunoprecipitations with RPS3 antibody.

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T20974 191-194 Protein denotes TNF
T20975 308-312 Protein denotes RPS3