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PMC:3062687 / 22350-22501 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15695 51-55 P23396 denotes RPS3
T15696 81-85 O14920 denotes IKKβ

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15375 0-2 IN denotes As
T15376 3-11 VB denotes expected
T15377 11-12 -COMMA- denotes ,
T15378 13-15 NNP denotes E.
T15379 16-20 NNP denotes coli
T15380 21-31 NN denotes infections
T15381 32-35 VB denotes did
T15382 36-39 RB denotes not
T15383 40-46 VB denotes affect
T15384 47-50 DT denotes the
T15385 51-55 NN denotes RPS3
T15386 56-63 JJ denotes nuclear
T15387 64-77 NN denotes translocation
T15388 78-80 IN denotes in
T15389 81-85 NN denotes IKKβ
T15390 86-87 -LRB- denotes (
T15391 87-91 NN denotes SSAA
T15392 91-92 -RRB- denotes )
T15393 92-103 JJ denotes -expressing
T15394 104-109 NN denotes cells
T15395 109-110 -COMMA- denotes ,
T15396 111-116 WRB denotes where
T15397 117-122 NN denotes NF-κB
T15398 123-132 NN denotes signaling
T15399 133-136 VB denotes was
T15400 137-140 JJ denotes low
T15401 141-142 -LRB- denotes (
T15402 142-146 NNP denotes Fig.
T15403 147-149 NNP denotes 7d
T15404 149-150 -RRB- denotes )
R12364 T15376 T15375 arg2Of expected,As
R12365 T15379 T15378 arg1Of coli,E.
R12366 T15380 T15379 arg1Of infections,coli
R12367 T15380 T15381 arg1Of infections,did
R12368 T15380 T15383 arg1Of infections,affect
R12369 T15383 T15375 arg1Of affect,As
R12370 T15383 T15377 arg1Of affect,","
R12371 T15383 T15381 arg2Of affect,did
R12372 T15383 T15382 arg1Of affect,not
R12373 T15387 T15383 arg2Of translocation,affect
R12374 T15387 T15384 arg1Of translocation,the
R12375 T15387 T15385 arg1Of translocation,RPS3
R12376 T15387 T15386 arg1Of translocation,nuclear
R12377 T15387 T15388 arg1Of translocation,in
R12378 T15391 T15390 arg2Of SSAA,(
R12379 T15392 T15390 arg3Of ),(
R12380 T15394 T15388 arg2Of cells,in
R12381 T15394 T15389 arg1Of cells,IKKβ
R12382 T15394 T15390 arg1Of cells,(
R12383 T15394 T15393 arg1Of cells,-expressing
R12384 T15394 T15395 arg1Of cells,","
R12385 T15394 T15396 arg1Of cells,where
R12386 T15394 T15401 arg1Of cells,(
R12387 T15398 T15397 arg1Of signaling,NF-κB
R12388 T15398 T15399 arg1Of signaling,was
R12389 T15398 T15400 arg1Of signaling,low
R12390 T15399 T15396 arg2Of was,where
R12391 T15400 T15399 arg2Of low,was
R12392 T15403 T15401 arg2Of 7d,(
R12393 T15403 T15402 arg1Of 7d,Fig.
R12394 T15404 T15401 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16190 0-2 IN denotes As
T16191 3-11 VBN denotes expected
T16192 11-12 , denotes ,
T16193 13-15 NNP denotes E.
T16194 16-20 NNS denotes coli
T16195 21-31 NNS denotes infections
T16196 32-35 VBD denotes did
T16197 36-39 RB denotes not
T16198 40-46 VB denotes affect
T16199 47-50 DT denotes the
T16200 51-55 JJ denotes RPS3
T16201 56-63 JJ denotes nuclear
T16202 64-77 NN denotes translocation
T16203 78-80 IN denotes in
T16204 81-85 NNP denotes IKKβ
T16205 86-87 -LRB- denotes (
T16206 87-91 NNP denotes SSAA
T16207 91-92 -RRB- denotes )
T16208 92-93 : denotes -
T16209 93-103 VBG denotes expressing
T16210 104-109 NNS denotes cells
T16211 109-110 , denotes ,
T16212 111-116 WRB denotes where
T16213 117-122 JJ denotes NF-κB
T16214 123-132 VBG denotes signaling
T16215 133-136 VBD denotes was
T16216 137-140 JJ denotes low
T16217 141-142 -LRB- denotes (
T16218 142-146 NNP denotes Fig.
T16219 147-149 CD denotes 7d
T16220 149-150 -RRB- denotes )
T16221 150-151 . denotes .
R13092 T16190 T16191 mark As,expected
R13093 T16191 T16198 advcl expected,affect
R13094 T16192 T16198 punct ",",affect
R13095 T16193 T16195 compound E.,infections
R13096 T16194 T16195 compound coli,infections
R13097 T16195 T16198 nsubj infections,affect
R13098 T16196 T16198 aux did,affect
R13099 T16197 T16198 neg not,affect
R13100 T16198 T16198 ROOT affect,affect
R13101 T16199 T16202 det the,translocation
R13102 T16200 T16202 amod RPS3,translocation
R13103 T16201 T16202 amod nuclear,translocation
R13104 T16202 T16198 dobj translocation,affect
R13105 T16203 T16202 prep in,translocation
R13106 T16204 T16203 pobj IKKβ,in
R13107 T16205 T16204 punct (,IKKβ
R13108 T16206 T16204 appos SSAA,IKKβ
R13109 T16207 T16204 punct ),IKKβ
R13110 T16208 T16202 punct -,translocation
R13111 T16209 T16202 acl expressing,translocation
R13112 T16210 T16209 dobj cells,expressing
R13113 T16211 T16209 punct ",",expressing
R13114 T16212 T16215 advmod where,was
R13115 T16213 T16214 amod NF-κB,signaling
R13116 T16214 T16215 nsubj signaling,was
R13117 T16215 T16202 relcl was,translocation
R13118 T16216 T16215 acomp low,was
R13119 T16217 T16218 punct (,Fig.
R13120 T16218 T16202 appos Fig.,translocation
R13121 T16219 T16218 nummod 7d,Fig.
R13122 T16220 T16218 punct ),Fig.
R13123 T16221 T16198 punct .,affect

GO-BP

Id Subject Object Predicate Lexical cue
T16717 117-132 http://purl.obolibrary.org/obo/GO_0038061 denotes NF-κB signaling
T16718 123-132 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T16747 104-109 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T14923 0-151 Sentence denotes As expected, E. coli infections did not affect the RPS3 nuclear translocation in IKKβ (SSAA)-expressing cells, where NF-κB signaling was low (Fig. 7d).
T153 0-151 Sentence denotes As expected, E. coli infections did not affect the RPS3 nuclear translocation in IKKβ (SSAA)-expressing cells, where NF-κB signaling was low (Fig. 7d).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T17594 40-46 Regulation denotes affect true
T17595 51-55 Protein denotes RPS3
T17596 56-63 Entity denotes nuclear
T17597 64-77 Localization denotes translocation
T17598 81-85 Protein denotes IKKβ
T17599 87-91 Negative_regulation denotes SSAA
T17600 93-103 Gene_expression denotes expressing
R14004 T17595 T17597 themeOf RPS3,translocation
R14006 T17596 T17597 locationOf nuclear,translocation
R14007 T17597 T17594 themeOf translocation,affect
R14008 T17598 T17599 themeOf IKKβ,SSAA
R14010 T17598 T17600 themeOf IKKβ,expressing

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T16858 51-55 Protein denotes RPS3
T16859 81-85 Protein denotes IKKβ
T16860 117-122 Protein denotes NF-κB
T16861 56-63 Entity denotes nuclear
T16862 64-77 Localization denotes translocation
T16863 92-103 Gene_expression denotes -expressing
T16864 40-46 Regulation denotes affect
R13572 T16858 T16862 themeOf RPS3,translocation
R13573 T16859 T16863 themeOf IKKβ,-expressing
R13574 T16861 T16862 locationOf nuclear,translocation
R13575 T16862 T16864 themeOf translocation,affect

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T14831 40-46 Regulation denotes affect true
T14832 51-55 Protein denotes RPS3
T14833 56-63 Entity denotes nuclear
T14834 64-77 Localization denotes translocation
T14835 81-85 Protein denotes IKKβ
T14836 87-91 Negative_regulation denotes SSAA
T14837 93-103 Gene_expression denotes expressing
R11871 T14832 T14834 themeOf RPS3,translocation
R11872 T14833 T14834 locationOf nuclear,translocation
R11873 T14834 T14831 themeOf translocation,affect
R11874 T14835 T14836 themeOf IKKβ,SSAA
R11875 T14835 T14837 themeOf IKKβ,expressing

test2

Id Subject Object Predicate Lexical cue
T14643 40-46 Regulation denotes affect
T14644 51-55 Protein denotes RPS3
T14645 56-63 Entity denotes nuclear
T14646 64-77 Localization denotes translocation
T14647 81-85 Protein denotes IKKβ
T14648 87-91 Negative_regulation denotes SSAA
T14649 93-103 Gene_expression denotes expressing
R11743 T14644 T14646 themeOf RPS3,translocation
R11744 T14645 T14646 locationOf nuclear,translocation
R11745 T14646 T14643 themeOf translocation,affect
R11746 T14647 T14649 themeOf IKKβ,expressing
R11747 T14647 T14648 themeOf IKKβ,SSAA