PMC:3062687 / 18915-19122 JSONTXT

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    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T13940","span":{"begin":92,"end":97},"obj":"P23396"},{"id":"T13941","span":{"begin":106,"end":110},"obj":"P23396"},{"id":"T13942","span":{"begin":160,"end":164},"obj":"P23396"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"While seemingly paradoxical, based on our cell culture data (Fig. 6d), we hypothesized that NleH1 blocked RPS3 S209 phosphorylation in vivo, thereby preventing RPS3 nuclear translocation in infected piglets."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T13820","span":{"begin":0,"end":5},"obj":"IN"},{"id":"T13821","span":{"begin":6,"end":15},"obj":"RB"},{"id":"T13822","span":{"begin":16,"end":27},"obj":"JJ"},{"id":"T13823","span":{"begin":27,"end":28},"obj":"-COMMA-"},{"id":"T13824","span":{"begin":29,"end":34},"obj":"VB"},{"id":"T13825","span":{"begin":35,"end":37},"obj":"IN"},{"id":"T13826","span":{"begin":38,"end":41},"obj":"PRP-DOLLAR-"},{"id":"T13827","span":{"begin":42,"end":46},"obj":"NN"},{"id":"T13828","span":{"begin":47,"end":54},"obj":"NN"},{"id":"T13829","span":{"begin":55,"end":59},"obj":"NN"},{"id":"T13830","span":{"begin":60,"end":61},"obj":"-LRB-"},{"id":"T13831","span":{"begin":61,"end":65},"obj":"NNP"},{"id":"T13832","span":{"begin":66,"end":68},"obj":"NNP"},{"id":"T13833","span":{"begin":68,"end":69},"obj":"-RRB-"},{"id":"T13834","span":{"begin":69,"end":70},"obj":"-COMMA-"},{"id":"T13835","span":{"begin":71,"end":73},"obj":"PRP"},{"id":"T13836","span":{"begin":74,"end":86},"obj":"VB"},{"id":"T13837","span":{"begin":87,"end":91},"obj":"IN"},{"id":"T13838","span":{"begin":92,"end":97},"obj":"NN"},{"id":"T13839","span":{"begin":98,"end":105},"obj":"VB"},{"id":"T13840","span":{"begin":106,"end":110},"obj":"NN"},{"id":"T13841","span":{"begin":111,"end":115},"obj":"NN"},{"id":"T13842","span":{"begin":116,"end":131},"obj":"NN"},{"id":"T13843","span":{"begin":132,"end":134},"obj":"FW"},{"id":"T13844","span":{"begin":135,"end":139},"obj":"FW"},{"id":"T13845","span":{"begin":139,"end":140},"obj":"-COMMA-"},{"id":"T13846","span":{"begin":141,"end":148},"obj":"RB"},{"id":"T13847","span":{"begin":149,"end":159},"obj":"VB"},{"id":"T13848","span":{"begin":160,"end":164},"obj":"NN"},{"id":"T13849","span":{"begin":165,"end":172},"obj":"JJ"},{"id":"T13850","span":{"begin":173,"end":186},"obj":"NN"},{"id":"T13851","span":{"begin":187,"end":189},"obj":"IN"},{"id":"T13852","span":{"begin":190,"end":198},"obj":"JJ"},{"id":"T13853","span":{"begin":199,"end":206},"obj":"NN"}],"relations":[{"id":"R11089","pred":"arg2Of","subj":"T13822","obj":"T13820"},{"id":"R11090","pred":"arg1Of","subj":"T13822","obj":"T13821"},{"id":"R11091","pred":"arg1Of","subj":"T13822","obj":"T13823"},{"id":"R11092","pred":"arg1Of","subj":"T13822","obj":"T13824"},{"id":"R11093","pred":"arg2Of","subj":"T13825","obj":"T13824"},{"id":"R11094","pred":"arg2Of","subj":"T13829","obj":"T13825"},{"id":"R11095","pred":"arg1Of","subj":"T13829","obj":"T13826"},{"id":"R11096","pred":"arg1Of","subj":"T13829","obj":"T13827"},{"id":"R11097","pred":"arg1Of","subj":"T13829","obj":"T13828"},{"id":"R11098","pred":"arg1Of","subj":"T13829","obj":"T13830"},{"id":"R11099","pred":"arg2Of","subj":"T13832","obj":"T13830"},{"id":"R11100","pred":"arg1Of","subj":"T13832","obj":"T13831"},{"id":"R11101","pred":"arg3Of","subj":"T13833","obj":"T13830"},{"id":"R11102","pred":"arg1Of","subj":"T13835","obj":"T13836"},{"id":"R11103","pred":"arg1Of","subj":"T13836","obj":"T13820"},{"id":"R11104","pred":"arg1Of","subj":"T13836","obj":"T13834"},{"id":"R11105","pred":"arg1Of","subj":"T13838","obj":"T13839"},{"id":"R11106","pred":"arg2Of","subj":"T13839","obj":"T13836"},{"id":"R11107","pred":"arg1Of","subj":"T13839","obj":"T13837"},{"id":"R11108","pred":"arg1Of","subj":"T13839","obj":"T13844"},{"id":"R11109","pred":"arg1Of","subj":"T13839","obj":"T13845"},{"id":"R11110","pred":"modOf","subj":"T13839","obj":"T13847"},{"id":"R11111","pred":"arg2Of","subj":"T13842","obj":"T13839"},{"id":"R11112","pred":"arg1Of","subj":"T13842","obj":"T13840"},{"id":"R11113","pred":"arg1Of","subj":"T13842","obj":"T13841"},{"id":"R11114","pred":"arg1Of","subj":"T13844","obj":"T13843"},{"id":"R11115","pred":"arg1Of","subj":"T13847","obj":"T13846"},{"id":"R11116","pred":"arg2Of","subj":"T13850","obj":"T13847"},{"id":"R11117","pred":"arg1Of","subj":"T13850","obj":"T13848"},{"id":"R11118","pred":"arg1Of","subj":"T13850","obj":"T13849"},{"id":"R11119","pred":"arg1Of","subj":"T13850","obj":"T13851"},{"id":"R11120","pred":"arg2Of","subj":"T13853","obj":"T13851"},{"id":"R11121","pred":"arg1Of","subj":"T13853","obj":"T13852"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"While seemingly paradoxical, based on our cell culture data (Fig. 6d), we hypothesized that NleH1 blocked RPS3 S209 phosphorylation in vivo, thereby preventing RPS3 nuclear translocation in infected piglets."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T14009","span":{"begin":0,"end":5},"obj":"IN"},{"id":"T14010","span":{"begin":6,"end":15},"obj":"RB"},{"id":"T14011","span":{"begin":16,"end":27},"obj":"JJ"},{"id":"T14012","span":{"begin":27,"end":28},"obj":","},{"id":"T14013","span":{"begin":29,"end":34},"obj":"VBN"},{"id":"T14014","span":{"begin":35,"end":37},"obj":"IN"},{"id":"T14015","span":{"begin":38,"end":41},"obj":"PRP$"},{"id":"T14016","span":{"begin":42,"end":46},"obj":"NN"},{"id":"T14017","span":{"begin":47,"end":54},"obj":"NN"},{"id":"T14018","span":{"begin":55,"end":59},"obj":"NNS"},{"id":"T14019","span":{"begin":60,"end":61},"obj":"-LRB-"},{"id":"T14020","span":{"begin":61,"end":65},"obj":"NNP"},{"id":"T14021","span":{"begin":66,"end":68},"obj":"CD"},{"id":"T14022","span":{"begin":68,"end":69},"obj":"-RRB-"},{"id":"T14023","span":{"begin":69,"end":70},"obj":","},{"id":"T14024","span":{"begin":71,"end":73},"obj":"PRP"},{"id":"T14025","span":{"begin":74,"end":86},"obj":"VBD"},{"id":"T14026","span":{"begin":87,"end":91},"obj":"IN"},{"id":"T14027","span":{"begin":92,"end":97},"obj":"NNP"},{"id":"T14028","span":{"begin":98,"end":105},"obj":"VBD"},{"id":"T14029","span":{"begin":106,"end":110},"obj":"CD"},{"id":"T14030","span":{"begin":111,"end":115},"obj":"CD"},{"id":"T14031","span":{"begin":116,"end":131},"obj":"NN"},{"id":"T14032","span":{"begin":132,"end":134},"obj":"IN"},{"id":"T14033","span":{"begin":135,"end":139},"obj":"NN"},{"id":"T14034","span":{"begin":139,"end":140},"obj":","},{"id":"T14035","span":{"begin":141,"end":148},"obj":"RB"},{"id":"T14036","span":{"begin":149,"end":159},"obj":"VBG"},{"id":"T14037","span":{"begin":160,"end":164},"obj":"JJ"},{"id":"T14038","span":{"begin":165,"end":172},"obj":"JJ"},{"id":"T14039","span":{"begin":173,"end":186},"obj":"NN"},{"id":"T14040","span":{"begin":187,"end":189},"obj":"IN"},{"id":"T14041","span":{"begin":190,"end":198},"obj":"JJ"},{"id":"T14042","span":{"begin":199,"end":206},"obj":"NNS"},{"id":"T14043","span":{"begin":206,"end":207},"obj":"."}],"relations":[{"id":"R11269","pred":"mark","subj":"T14009","obj":"T14025"},{"id":"R11270","pred":"advmod","subj":"T14010","obj":"T14011"},{"id":"R11271","pred":"advcl","subj":"T14011","obj":"T14025"},{"id":"R11272","pred":"punct","subj":"T14012","obj":"T14013"},{"id":"R11273","pred":"prep","subj":"T14013","obj":"T14011"},{"id":"R11274","pred":"prep","subj":"T14014","obj":"T14013"},{"id":"R11275","pred":"poss","subj":"T14015","obj":"T14018"},{"id":"R11276","pred":"compound","subj":"T14016","obj":"T14017"},{"id":"R11277","pred":"compound","subj":"T14017","obj":"T14018"},{"id":"R11278","pred":"pobj","subj":"T14018","obj":"T14014"},{"id":"R11279","pred":"punct","subj":"T14019","obj":"T14020"},{"id":"R11280","pred":"appos","subj":"T14020","obj":"T14011"},{"id":"R11281","pred":"nummod","subj":"T14021","obj":"T14020"},{"id":"R11282","pred":"punct","subj":"T14022","obj":"T14020"},{"id":"R11283","pred":"punct","subj":"T14023","obj":"T14025"},{"id":"R11284","pred":"nsubj","subj":"T14024","obj":"T14025"},{"id":"R11285","pred":"ROOT","subj":"T14025","obj":"T14025"},{"id":"R11286","pred":"mark","subj":"T14026","obj":"T14028"},{"id":"R11287","pred":"nsubj","subj":"T14027","obj":"T14028"},{"id":"R11288","pred":"ccomp","subj":"T14028","obj":"T14025"},{"id":"R11289","pred":"nummod","subj":"T14029","obj":"T14031"},{"id":"R11290","pred":"nummod","subj":"T14030","obj":"T14031"},{"id":"R11291","pred":"dobj","subj":"T14031","obj":"T14028"},{"id":"R11292","pred":"prep","subj":"T14032","obj":"T14031"},{"id":"R11293","pred":"pobj","subj":"T14033","obj":"T14032"},{"id":"R11294","pred":"punct","subj":"T14034","obj":"T14028"},{"id":"R11295","pred":"advmod","subj":"T14035","obj":"T14036"},{"id":"R11296","pred":"advcl","subj":"T14036","obj":"T14028"},{"id":"R11297","pred":"amod","subj":"T14037","obj":"T14039"},{"id":"R11298","pred":"amod","subj":"T14038","obj":"T14039"},{"id":"R11299","pred":"dobj","subj":"T14039","obj":"T14036"},{"id":"R11300","pred":"prep","subj":"T14040","obj":"T14036"},{"id":"R11301","pred":"amod","subj":"T14041","obj":"T14042"},{"id":"R11302","pred":"pobj","subj":"T14042","obj":"T14040"},{"id":"R11303","pred":"punct","subj":"T14043","obj":"T14025"}],"text":"While seemingly paradoxical, based on our cell culture data (Fig. 6d), we hypothesized that NleH1 blocked RPS3 S209 phosphorylation in vivo, thereby preventing RPS3 nuclear translocation in infected piglets."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T14165","span":{"begin":116,"end":131},"obj":"http://purl.obolibrary.org/obo/GO_0016310"}],"text":"While seemingly paradoxical, based on our cell culture data (Fig. 6d), we hypothesized that NleH1 blocked RPS3 S209 phosphorylation in vivo, thereby preventing RPS3 nuclear translocation in infected piglets."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T14169","span":{"begin":42,"end":46},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"While seemingly paradoxical, based on our cell culture data (Fig. 6d), we hypothesized that NleH1 blocked RPS3 S209 phosphorylation in vivo, thereby preventing RPS3 nuclear translocation in infected piglets."}

    sentences

    {"project":"sentences","denotations":[{"id":"T13758","span":{"begin":0,"end":207},"obj":"Sentence"},{"id":"T130","span":{"begin":0,"end":207},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"While seemingly paradoxical, based on our cell culture data (Fig. 6d), we hypothesized that NleH1 blocked RPS3 S209 phosphorylation in vivo, thereby preventing RPS3 nuclear translocation in infected piglets."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T14281","span":{"begin":92,"end":97},"obj":"Protein"},{"id":"T14282","span":{"begin":98,"end":105},"obj":"Negative_regulation"},{"id":"T14283","span":{"begin":106,"end":110},"obj":"Protein"},{"id":"T14284","span":{"begin":111,"end":115},"obj":"Entity"},{"id":"T14285","span":{"begin":116,"end":131},"obj":"Phosphorylation"},{"id":"T14286","span":{"begin":149,"end":159},"obj":"Negative_regulation"},{"id":"T14287","span":{"begin":160,"end":164},"obj":"Protein"},{"id":"T14288","span":{"begin":165,"end":172},"obj":"Entity"},{"id":"T14289","span":{"begin":173,"end":186},"obj":"Localization"}],"relations":[{"id":"R11482","pred":"causeOf","subj":"T14281","obj":"T14282"},{"id":"R11483","pred":"causeOf","subj":"T14282","obj":"T14286"},{"id":"R11484","pred":"themeOf","subj":"T14284","obj":"T14285"},{"id":"R11485","pred":"partOf","subj":"T14284","obj":"T14283"},{"id":"R11486","pred":"themeOf","subj":"T14285","obj":"T14282"},{"id":"R11487","pred":"themeOf","subj":"T14287","obj":"T14289"},{"id":"R11488","pred":"locationOf","subj":"T14288","obj":"T14289"},{"id":"R11489","pred":"themeOf","subj":"T14289","obj":"T14286"}],"attributes":[{"id":"M472","pred":"Speculation","subj":"T14286","obj":"true"}],"text":"While seemingly paradoxical, based on our cell culture data (Fig. 6d), we hypothesized that NleH1 blocked RPS3 S209 phosphorylation in vivo, thereby preventing RPS3 nuclear translocation in infected piglets."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T14176","span":{"begin":92,"end":97},"obj":"Protein"},{"id":"T14177","span":{"begin":106,"end":115},"obj":"Protein"},{"id":"T14178","span":{"begin":160,"end":164},"obj":"Protein"},{"id":"T14179","span":{"begin":116,"end":131},"obj":"Phosphorylation"},{"id":"T14180","span":{"begin":165,"end":172},"obj":"Entity"},{"id":"T14181","span":{"begin":173,"end":186},"obj":"Localization"},{"id":"T14182","span":{"begin":98,"end":105},"obj":"Negative_regulation"},{"id":"T14183","span":{"begin":149,"end":159},"obj":"Negative_regulation"}],"relations":[{"id":"R11412","pred":"causeOf","subj":"T14176","obj":"T14182"},{"id":"R11413","pred":"themeOf","subj":"T14177","obj":"T14179"},{"id":"R11414","pred":"themeOf","subj":"T14178","obj":"T14181"},{"id":"R11415","pred":"themeOf","subj":"T14179","obj":"T14182"},{"id":"R11416","pred":"locationOf","subj":"T14180","obj":"T14181"},{"id":"R11417","pred":"themeOf","subj":"T14181","obj":"T14183"}],"text":"While seemingly paradoxical, based on our cell culture data (Fig. 6d), we hypothesized that NleH1 blocked RPS3 S209 phosphorylation in vivo, thereby preventing RPS3 nuclear translocation in infected piglets."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T13734","span":{"begin":92,"end":97},"obj":"Protein"},{"id":"T13735","span":{"begin":98,"end":105},"obj":"Negative_regulation"},{"id":"T13736","span":{"begin":106,"end":110},"obj":"Protein"},{"id":"T13737","span":{"begin":111,"end":115},"obj":"Entity"},{"id":"T13738","span":{"begin":116,"end":131},"obj":"Phosphorylation"},{"id":"T13739","span":{"begin":149,"end":159},"obj":"Negative_regulation"},{"id":"T13740","span":{"begin":160,"end":164},"obj":"Protein"},{"id":"T13741","span":{"begin":165,"end":172},"obj":"Entity"},{"id":"T13742","span":{"begin":173,"end":186},"obj":"Localization"}],"relations":[{"id":"R11015","pred":"causeOf","subj":"T13734","obj":"T13735"},{"id":"R11016","pred":"causeOf","subj":"T13735","obj":"T13739"},{"id":"R11017","pred":"themeOf","subj":"T13737","obj":"T13738"},{"id":"R11018","pred":"partOf","subj":"T13737","obj":"T13736"},{"id":"R11019","pred":"themeOf","subj":"T13738","obj":"T13735"},{"id":"R11020","pred":"themeOf","subj":"T13740","obj":"T13742"},{"id":"R11021","pred":"locationOf","subj":"T13741","obj":"T13742"},{"id":"R11022","pred":"themeOf","subj":"T13742","obj":"T13739"}],"attributes":[{"id":"M468","pred":"Speculation","subj":"T13739","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"While seemingly paradoxical, based on our cell culture data (Fig. 6d), we hypothesized that NleH1 blocked RPS3 S209 phosphorylation in vivo, thereby preventing RPS3 nuclear translocation in infected piglets."}

    test2

    {"project":"test2","denotations":[{"id":"T13707","span":{"begin":92,"end":97},"obj":"Protein"},{"id":"T13708","span":{"begin":98,"end":105},"obj":"Negative_regulation"},{"id":"T13709","span":{"begin":106,"end":110},"obj":"Protein"},{"id":"T13710","span":{"begin":111,"end":115},"obj":"Entity"},{"id":"T13711","span":{"begin":116,"end":131},"obj":"Phosphorylation"},{"id":"T13712","span":{"begin":149,"end":159},"obj":"Negative_regulation"},{"id":"T13713","span":{"begin":160,"end":164},"obj":"Protein"},{"id":"T13714","span":{"begin":165,"end":172},"obj":"Entity"},{"id":"T13715","span":{"begin":173,"end":186},"obj":"Localization"}],"relations":[{"id":"R10999","pred":"causeOf","subj":"T13707","obj":"T13708"},{"id":"R11000","pred":"causeOf","subj":"T13708","obj":"T13712"},{"id":"R11001","pred":"partOf","subj":"T13710","obj":"T13709"},{"id":"R11002","pred":"themeOf","subj":"T13710","obj":"T13711"},{"id":"R11003","pred":"themeOf","subj":"T13711","obj":"T13708"},{"id":"R11004","pred":"themeOf","subj":"T13713","obj":"T13715"},{"id":"R11005","pred":"locationOf","subj":"T13714","obj":"T13715"},{"id":"R11006","pred":"themeOf","subj":"T13715","obj":"T13712"}],"text":"While seemingly paradoxical, based on our cell culture data (Fig. 6d), we hypothesized that NleH1 blocked RPS3 S209 phosphorylation in vivo, thereby preventing RPS3 nuclear translocation in infected piglets."}